Wall clock time and date at job start Sat Mar 6 2021 19:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86301 * 109.47197 * 2 1 4 4 C 1.50704 * 109.47634 * 120.00236 * 2 1 3 5 5 C 1.34492 * 125.49229 * 209.97721 * 4 2 1 6 6 C 1.46755 * 106.36308 * 180.02562 * 5 4 2 7 7 C 1.47266 * 126.96998 * 179.97438 * 6 5 4 8 8 O 1.21626 * 120.00102 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00148 * 0.02562 * 7 6 5 10 10 C 1.46496 * 120.00336 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46684 * 324.99535 * 10 9 7 12 12 C 1.53002 * 109.47428 * 84.99288 * 10 9 7 13 13 C 1.52996 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47165 * 300.00293 * 13 12 10 15 15 H 1.09000 * 109.47140 * 299.99954 * 14 13 12 16 16 C 1.50706 * 109.46909 * 180.02562 * 14 13 12 17 17 N 1.30643 * 119.25260 * 264.72146 * 16 14 13 18 18 C 1.33514 * 121.50284 * 179.75645 * 17 16 14 19 19 C 1.36200 * 119.91272 * 0.52086 * 18 17 16 20 20 C 1.41020 * 118.59164 * 359.74705 * 19 18 17 21 21 O 1.21980 * 120.70908 * 179.97438 * 20 19 18 22 22 N 1.34745 * 119.25638 * 85.00136 * 16 14 13 23 23 C 1.52999 * 109.47592 * 60.00300 * 14 13 12 24 24 C 1.52997 * 109.47079 * 204.99808 * 10 9 7 25 25 C 1.36330 * 106.06244 * 0.24442 * 6 5 4 26 26 C 1.50999 * 126.79647 * 179.80529 * 25 6 5 27 27 C 1.53389 * 108.25131 * 164.25944 * 26 25 6 28 28 C 1.53170 * 109.03967 * 48.48459 * 27 26 25 29 29 C 1.53374 * 109.31036 * 290.19487 * 28 27 26 30 30 N 1.35218 * 108.65847 * 359.60238 * 25 6 5 31 31 H 0.96696 * 114.00445 * 59.99852 * 1 2 3 32 32 H 1.09002 * 109.47308 * 240.00152 * 2 1 3 33 33 H 1.48494 * 110.00176 * 60.00099 * 3 2 1 34 34 H 1.48502 * 110.00014 * 181.32388 * 3 2 1 35 35 H 1.08000 * 126.82381 * 0.05097 * 5 4 2 36 36 H 0.97005 * 119.99682 * 359.97438 * 9 7 6 37 37 H 1.08992 * 109.46974 * 300.00496 * 12 10 9 38 38 H 1.08996 * 109.46550 * 60.00602 * 12 10 9 39 39 H 1.09000 * 109.47054 * 60.00300 * 13 12 10 40 40 H 1.09001 * 109.46997 * 180.02562 * 13 12 10 41 41 H 1.08001 * 120.04452 * 180.26832 * 18 17 16 42 42 H 1.07996 * 120.70871 * 179.76791 * 19 18 17 43 43 H 0.97010 * 120.04083 * 359.97438 * 22 16 14 44 44 H 1.08993 * 109.47839 * 180.02562 * 23 14 13 45 45 H 1.09000 * 109.47160 * 59.99666 * 23 14 13 46 46 H 1.09001 * 109.46922 * 59.99748 * 24 10 9 47 47 H 1.09000 * 109.47140 * 299.99448 * 24 10 9 48 48 H 1.09008 * 109.70738 * 283.95304 * 26 25 6 49 49 H 1.09000 * 109.70651 * 44.52978 * 26 25 6 50 50 H 1.08997 * 109.54379 * 168.34928 * 27 26 25 51 51 H 1.08996 * 109.54212 * 288.52872 * 27 26 25 52 52 H 1.09000 * 109.45793 * 50.44247 * 28 27 26 53 53 H 1.08998 * 109.45726 * 170.42028 * 28 27 26 54 54 H 1.09005 * 110.13087 * 291.23584 * 29 28 27 55 55 H 1.08996 * 109.09187 * 170.84437 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 3.0860 -0.4466 1.8677 6 6 3.1558 -1.3782 2.9994 7 6 4.2345 -1.4809 3.9967 8 8 4.1622 -2.3052 4.8881 9 7 5.3019 -0.6614 3.9218 10 6 6.3753 -0.7639 4.9135 11 1 5.9502 -1.0216 5.8835 12 6 7.3637 -1.8504 4.4850 13 6 8.4842 -1.9578 5.5211 14 6 9.2135 -0.6168 5.6244 15 1 9.6389 -0.3589 4.6546 16 6 10.3177 -0.7228 6.6446 17 7 10.0913 -0.3388 7.8726 18 6 11.0354 -0.4174 8.8135 19 6 12.2705 -0.8971 8.4979 20 6 12.5167 -1.3066 7.1712 21 8 13.6089 -1.7418 6.8461 22 7 11.5178 -1.2063 6.2682 23 6 8.2252 0.4697 6.0530 24 6 7.1044 0.5772 5.0163 25 6 2.0226 -2.1334 2.9368 26 6 1.6220 -3.2431 3.8793 27 6 0.1300 -3.5333 3.6731 28 6 -0.1482 -3.6789 2.1739 29 6 -0.0053 -2.3104 1.4963 30 7 1.2887 -1.7252 1.8771 31 1 -0.3934 0.4417 -0.7650 32 1 1.7923 -0.5138 -0.8900 33 1 1.5615 2.4679 1.2084 34 1 3.5346 1.7703 -0.0322 35 1 3.8166 0.3024 1.6000 36 1 5.3598 -0.0042 3.2106 37 1 6.8442 -2.8057 4.4117 38 1 7.7887 -1.5926 3.5150 39 1 8.0588 -2.2157 6.4909 40 1 9.1886 -2.7315 5.2156 41 1 10.8212 -0.0972 9.8225 42 1 13.0447 -0.9628 9.2479 43 1 11.6640 -1.4819 5.3497 44 1 8.7446 1.4251 6.1262 45 1 7.7998 0.2117 7.0229 46 1 6.4002 1.3511 5.3216 47 1 7.5295 0.8349 4.0462 48 1 2.2042 -4.1385 3.6615 49 1 1.7976 -2.9320 4.9091 50 1 -0.1357 -4.4583 4.1847 51 1 -0.4606 -2.7109 4.0767 52 1 0.5628 -4.3814 1.7393 53 1 -1.1622 -4.0508 2.0273 54 1 -0.8120 -1.6491 1.8125 55 1 -0.0420 -2.4424 0.4150 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_16915396.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:58:36 Heat of formation + Delta-G solvation = -32.703881 kcal Electronic energy + Delta-G solvation = -37747.700944 eV Core-core repulsion = 32944.075403 eV Total energy + Delta-G solvation = -4803.625540 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.199 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.92001 -42.83047 -40.81937 -39.49609 -38.45007 -37.84066 -36.89283 -35.84010 -35.10437 -33.62532 -32.53891 -31.83026 -31.29846 -30.45158 -29.17107 -26.69854 -25.87165 -25.40401 -24.58357 -23.97796 -23.73206 -22.44514 -21.70573 -21.27367 -20.78385 -19.79313 -19.54009 -19.14217 -18.44533 -18.16722 -17.82612 -17.27125 -17.08489 -16.85098 -16.61402 -16.01321 -15.89915 -15.80591 -15.63768 -15.50574 -15.32793 -15.16705 -15.14491 -15.10724 -14.59752 -14.49484 -14.41959 -14.34436 -14.08359 -13.93968 -13.83407 -13.44872 -13.25288 -13.16923 -12.85368 -12.53579 -12.51782 -12.35385 -12.15045 -12.10876 -12.05192 -12.03635 -11.84403 -11.80935 -11.61997 -11.40261 -11.33148 -11.10544 -10.91091 -10.54150 -10.10411 -9.68178 -9.67135 -9.10518 -4.92456 -0.47163 0.64540 0.66465 0.98832 1.40019 1.54107 1.71842 1.79934 2.09975 2.33811 2.46246 2.48896 2.76775 3.20130 3.39762 3.50097 3.55997 3.56611 3.62226 3.69844 3.72904 3.76288 3.83542 3.94600 4.06198 4.15049 4.17033 4.24689 4.28008 4.32934 4.33621 4.35683 4.38505 4.46618 4.48237 4.49410 4.51094 4.63316 4.68885 4.72932 4.77790 4.80042 4.87255 4.91794 4.95916 4.99770 5.04633 5.09174 5.14605 5.17803 5.20055 5.29676 5.33769 5.42727 5.46563 5.56843 5.61991 5.97703 6.14917 6.60426 6.65226 6.69639 6.85591 7.30415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.054 4.054 3 Si 0.804 3.196 4 C 0.025 3.975 5 C -0.190 4.190 6 C -0.257 4.257 7 C 0.590 3.410 8 O -0.583 6.583 9 N -0.714 5.714 10 C 0.144 3.856 11 H 0.066 0.934 12 C -0.118 4.118 13 C -0.102 4.102 14 C -0.039 4.039 15 H 0.131 0.869 16 C 0.410 3.590 17 N -0.545 5.545 18 C 0.173 3.827 19 C -0.318 4.318 20 C 0.509 3.491 21 O -0.593 6.593 22 N -0.615 5.615 23 C -0.090 4.090 24 C -0.119 4.119 25 C 0.101 3.899 26 C -0.052 4.052 27 C -0.125 4.125 28 C -0.134 4.134 29 C 0.112 3.888 30 N -0.424 5.424 31 H 0.409 0.591 32 H 0.100 0.900 33 H -0.311 1.311 34 H -0.276 1.276 35 H 0.158 0.842 36 H 0.409 0.591 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.198 0.802 42 H 0.160 0.840 43 H 0.429 0.571 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.092 0.908 51 H 0.064 0.936 52 H 0.071 0.929 53 H 0.111 0.889 54 H 0.089 0.911 55 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 4.427 -8.941 12.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.162 4.162 3 Si 0.708 3.292 4 C -0.085 4.085 5 C -0.214 4.214 6 C -0.266 4.266 7 C 0.380 3.620 8 O -0.465 6.465 9 N -0.365 5.365 10 C 0.040 3.960 11 H 0.084 0.916 12 C -0.157 4.157 13 C -0.141 4.141 14 C -0.060 4.060 15 H 0.149 0.851 16 C 0.146 3.854 17 N -0.268 5.268 18 C 0.033 3.967 19 C -0.342 4.342 20 C 0.310 3.690 21 O -0.476 6.476 22 N -0.252 5.252 23 C -0.129 4.129 24 C -0.156 4.156 25 C -0.017 4.017 26 C -0.090 4.090 27 C -0.163 4.163 28 C -0.172 4.172 29 C -0.008 4.008 30 N -0.100 5.100 31 H 0.261 0.739 32 H 0.118 0.882 33 H -0.240 1.240 34 H -0.203 1.203 35 H 0.176 0.824 36 H 0.245 0.755 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.215 0.785 42 H 0.177 0.823 43 H 0.269 0.731 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.110 0.890 48 H 0.101 0.899 49 H 0.099 0.901 50 H 0.110 0.890 51 H 0.083 0.917 52 H 0.090 0.910 53 H 0.129 0.871 54 H 0.107 0.893 55 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.625 4.102 -7.165 11.238 hybrid contribution 1.252 -0.856 -0.167 1.525 sum -6.374 3.246 -7.331 10.242 Atomic orbital electron populations 1.86376 1.16794 1.82473 1.51897 1.24614 0.86138 1.10808 0.94679 0.94512 0.77894 0.72411 0.84413 1.20318 0.94760 0.94324 0.99074 1.21812 0.99207 1.03226 0.97166 1.20013 0.98739 1.05650 1.02229 1.17471 0.81362 0.80042 0.83130 1.90736 1.80095 1.38359 1.37298 1.45760 1.20227 1.38303 1.32168 1.21046 0.86576 0.96619 0.91737 0.91590 1.21807 0.95603 0.98686 0.99619 1.21483 0.97324 0.95085 1.00224 1.20655 0.91229 0.98310 0.95759 0.85079 1.23654 0.84719 0.83673 0.93371 1.68391 1.33935 1.24899 0.99553 1.23182 0.87022 0.86798 0.99684 1.23005 1.02182 1.12827 0.96186 1.17659 0.83671 0.79933 0.87733 1.90987 1.24593 1.50353 1.81635 1.44631 1.11782 1.52622 1.16172 1.21317 0.94594 0.97743 0.99217 1.21802 0.97537 0.95064 1.01237 1.20664 0.91713 0.98376 0.90983 1.20447 0.97133 0.94354 0.97039 1.21713 0.94266 1.03443 0.96856 1.22008 1.04831 0.95283 0.95065 1.22282 0.81681 0.94865 1.01954 1.44111 1.17935 1.26775 1.21146 0.73877 0.88246 1.23981 1.20284 0.82428 0.75527 0.93130 0.89484 0.91783 0.90285 0.78497 0.82283 0.73083 0.89896 0.90680 0.90532 0.88963 0.89869 0.90115 0.88951 0.91686 0.90986 0.87099 0.89318 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 3.29 10.65 -148.98 -1.59 1.70 16 2 C -0.05 0.23 2.98 71.24 0.21 0.44 16 3 Si 0.80 -4.55 31.23 68.60 2.14 -2.41 16 4 C 0.02 0.09 6.18 40.99 0.25 0.34 16 5 C -0.19 -0.91 9.09 23.64 0.21 -0.69 16 6 C -0.26 -2.27 6.28 -19.12 -0.12 -2.39 16 7 C 0.59 5.67 7.77 86.62 0.67 6.34 16 8 O -0.58 -9.28 14.99 -4.11 -0.06 -9.34 16 9 N -0.71 -1.40 5.07 -445.96 -2.26 -3.66 16 10 C 0.14 -0.09 2.45 44.99 0.11 0.03 16 11 H 0.07 0.34 7.58 -2.39 -0.02 0.32 16 12 C -0.12 0.27 5.49 30.59 0.17 0.44 16 13 C -0.10 0.46 5.19 30.59 0.16 0.62 16 14 C -0.04 0.28 2.48 -11.54 -0.03 0.25 16 15 H 0.13 -1.64 8.14 -2.39 -0.02 -1.66 16 16 C 0.41 -0.90 6.73 138.18 0.93 0.03 16 17 N -0.54 -0.14 9.11 -187.55 -1.71 -1.85 16 18 C 0.17 -0.05 11.20 83.96 0.94 0.89 16 19 C -0.32 -1.30 10.07 22.48 0.23 -1.08 16 20 C 0.51 4.25 7.75 84.88 0.66 4.90 16 21 O -0.59 -10.43 17.97 -5.25 -0.09 -10.53 16 22 N -0.61 0.00 5.25 -310.69 -1.63 -1.63 16 23 C -0.09 0.55 4.67 30.61 0.14 0.70 16 24 C -0.12 0.77 5.39 30.61 0.17 0.93 16 25 C 0.10 0.81 6.57 41.69 0.27 1.09 16 26 C -0.05 -0.30 5.33 30.07 0.16 -0.14 16 27 C -0.13 0.03 5.97 30.78 0.18 0.22 16 28 C -0.13 0.43 5.94 30.78 0.18 0.61 16 29 C 0.11 -0.11 5.32 86.40 0.46 0.35 16 30 N -0.42 -1.97 3.11 -493.17 -1.53 -3.50 16 31 H 0.41 -6.62 8.74 -74.06 -0.65 -7.27 16 32 H 0.10 -0.83 7.96 -2.39 -0.02 -0.85 16 33 H -0.31 -1.36 7.11 99.48 0.71 -0.65 16 34 H -0.28 0.59 6.88 99.48 0.68 1.28 16 35 H 0.16 0.07 6.37 -2.91 -0.02 0.05 16 36 H 0.41 -1.08 7.73 -92.70 -0.72 -1.80 16 37 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.20 -1.30 8.06 -2.91 -0.02 -1.32 16 42 H 0.16 0.44 8.06 -2.91 -0.02 0.41 16 43 H 0.43 -2.01 8.78 -92.70 -0.81 -2.83 16 44 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 45 H 0.07 -0.19 7.76 -2.39 -0.02 -0.21 16 46 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 47 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 48 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 49 H 0.08 0.75 7.39 -2.39 -0.02 0.73 16 50 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 51 H 0.06 0.05 8.12 -2.39 -0.02 0.03 16 52 H 0.07 -0.16 8.11 -2.39 -0.02 -0.18 16 53 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 54 H 0.09 -0.06 8.00 -2.38 -0.02 -0.08 16 55 H 0.10 -0.35 7.69 -2.39 -0.02 -0.36 16 Total: 0.00 -33.27 434.15 -1.99 -35.26 By element: Atomic # 1 Polarization: -16.71 SS G_CDS: -1.22 Total: -17.93 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 5.97 Total: 13.89 kcal Atomic # 7 Polarization: -3.51 SS G_CDS: -7.14 Total: -10.64 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -1.74 Total: -18.17 kcal Atomic # 14 Polarization: -4.55 SS G_CDS: 2.14 Total: -2.41 kcal Total: -33.27 -1.99 -35.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_16915396.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.555 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds