Wall clock time and date at job start Sat Mar 6 2021 19:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47055 * 240.00160 * 2 1 3 5 5 C 1.38271 * 119.94343 * 119.72621 * 4 2 1 6 6 C 1.38145 * 120.04946 * 179.72605 * 5 4 2 7 7 C 1.38729 * 119.95020 * 0.57219 * 6 5 4 8 8 O 1.35899 * 120.05796 * 179.68323 * 7 6 5 9 9 C 1.42894 * 116.99856 * 0.02562 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99367 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00513 * 180.02562 * 10 9 8 13 13 C 1.46493 * 120.00066 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47411 * 324.99459 * 13 12 10 15 15 C 1.53002 * 109.47408 * 84.99844 * 13 12 10 16 16 C 1.52995 * 109.47186 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47584 * 300.00649 * 16 15 13 18 18 H 1.08997 * 109.46461 * 299.99310 * 17 16 15 19 19 C 1.50697 * 109.47181 * 179.97438 * 17 16 15 20 20 N 1.30635 * 119.25592 * 264.99729 * 19 17 16 21 21 C 1.33525 * 121.50964 * 179.97438 * 20 19 17 22 22 C 1.36202 * 119.90675 * 0.02562 * 21 20 19 23 23 C 1.41025 * 118.59289 * 359.97438 * 22 21 20 24 24 O 1.21979 * 120.70735 * 180.02562 * 23 22 21 25 25 N 1.34755 * 119.25362 * 84.72195 * 19 17 16 26 26 C 1.52994 * 109.47070 * 59.99791 * 17 16 15 27 27 C 1.52997 * 109.47045 * 299.99834 * 26 17 16 28 28 C 1.38729 * 119.88345 * 359.70221 * 7 6 5 29 29 C 1.38150 * 119.95038 * 0.02562 * 28 7 6 30 30 H 0.96703 * 114.00193 * 300.00032 * 1 2 3 31 31 H 1.09002 * 109.46984 * 120.00249 * 2 1 3 32 32 H 1.48495 * 110.00011 * 300.00099 * 3 2 1 33 33 H 1.48509 * 109.99497 * 61.32113 * 3 2 1 34 34 H 1.07998 * 119.96980 * 359.97438 * 5 4 2 35 35 H 1.08009 * 120.02002 * 180.25264 * 6 5 4 36 36 H 1.08998 * 109.47756 * 300.00046 * 9 8 7 37 37 H 1.09004 * 109.47495 * 60.00434 * 9 8 7 38 38 H 0.97004 * 119.99326 * 359.97438 * 12 10 9 39 39 H 1.08997 * 109.46963 * 300.00215 * 15 13 12 40 40 H 1.09005 * 109.46862 * 59.99916 * 15 13 12 41 41 H 1.08998 * 109.47306 * 179.97438 * 16 15 13 42 42 H 1.09005 * 109.46799 * 60.00476 * 16 15 13 43 43 H 1.07993 * 120.04558 * 180.02562 * 21 20 19 44 44 H 1.07994 * 120.69931 * 179.97438 * 22 21 20 45 45 H 0.96997 * 120.04144 * 0.02994 * 25 19 17 46 46 H 1.09008 * 109.46891 * 180.02562 * 26 17 16 47 47 H 1.08990 * 109.47554 * 60.00535 * 26 17 16 48 48 H 1.08998 * 109.47658 * 300.00086 * 27 26 17 49 49 H 1.09007 * 109.47257 * 180.02562 * 27 26 17 50 50 H 1.08010 * 120.02909 * 179.97438 * 28 7 6 51 51 H 1.07997 * 119.97457 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7215 -0.0356 -2.1428 6 6 3.1878 -0.6863 -3.2686 7 6 2.8530 -2.0143 -3.4896 8 8 3.3052 -2.6546 -4.5997 9 6 4.1218 -1.8995 -5.4968 10 6 4.5264 -2.7681 -6.6599 11 8 4.1518 -3.9203 -6.7153 12 7 5.3044 -2.2646 -7.6386 13 6 5.6972 -3.1089 -8.7695 14 1 5.8450 -4.1324 -8.4248 15 6 4.5967 -3.0826 -9.8321 16 6 5.0072 -3.9638 -11.0134 17 6 6.3105 -3.4350 -11.6157 18 1 6.1625 -2.4116 -11.9602 19 6 6.7151 -4.3035 -12.7788 20 7 7.5613 -5.2793 -12.5831 21 6 7.9502 -6.0765 -13.5811 22 6 7.4622 -5.8794 -14.8373 23 6 6.5487 -4.8260 -15.0489 24 8 6.0871 -4.6152 -16.1581 25 7 6.1915 -4.0595 -13.9963 26 6 7.4109 -3.4615 -10.5530 27 6 7.0005 -2.5801 -9.3718 28 6 2.0553 -2.6874 -2.5757 29 6 1.5961 -2.0340 -1.4484 30 1 -0.3934 0.4417 0.7651 31 1 1.7923 -0.5139 0.8900 32 1 1.5616 2.4679 -1.2084 33 1 1.5879 2.4585 1.2244 34 1 2.9775 0.9997 -1.9729 35 1 3.8084 -0.1599 -3.9788 36 1 3.5606 -1.0398 -5.8629 37 1 5.0139 -1.5550 -4.9736 38 1 5.6037 -1.3430 -7.5943 39 1 3.6681 -3.4589 -9.4029 40 1 4.4490 -2.0591 -10.1768 41 1 4.2230 -3.9454 -11.7703 42 1 5.1551 -4.9874 -10.6690 43 1 8.6508 -6.8765 -13.3925 44 1 7.7684 -6.5162 -15.6540 45 1 5.5621 -3.3314 -14.1172 46 1 8.3394 -3.0843 -10.9820 47 1 7.5589 -4.4849 -10.2086 48 1 6.8525 -1.5566 -9.7162 49 1 7.7847 -2.5986 -8.6148 50 1 1.7928 -3.7212 -2.7456 51 1 0.9754 -2.5577 -0.7365 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_2989410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:58:44 Heat of formation + Delta-G solvation = -75.859671 kcal Electronic energy + Delta-G solvation = -33943.808610 eV Core-core repulsion = 29196.130651 eV Total energy + Delta-G solvation = -4747.677959 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.172 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.89890 -41.56298 -40.82284 -39.66718 -38.95513 -38.38623 -37.29938 -35.86469 -35.16626 -32.77605 -32.33357 -31.80676 -31.77894 -30.65798 -28.96144 -26.23840 -25.76781 -25.30126 -24.01571 -23.71753 -22.81485 -22.11640 -21.53481 -20.82145 -19.77378 -19.44381 -19.16953 -18.56445 -18.27888 -17.79456 -17.40449 -17.32783 -17.06602 -16.87314 -16.73120 -16.03957 -15.74997 -15.66806 -15.62019 -15.50379 -15.23256 -15.10405 -14.88327 -14.47097 -14.42386 -14.12044 -14.06560 -13.99659 -13.92860 -13.54797 -13.44893 -13.34278 -13.14185 -12.52272 -12.44976 -12.34646 -12.15604 -12.09861 -12.03116 -11.88292 -11.73216 -11.59116 -11.38609 -11.30894 -11.09014 -10.90150 -10.46790 -10.09964 -10.01873 -9.67184 -9.19455 -4.90712 -0.45755 0.28720 0.32905 0.67607 1.33756 1.50443 1.51969 1.57573 1.63286 1.97796 2.49809 2.61352 2.64329 2.79611 3.40641 3.42903 3.54361 3.63026 3.66609 3.72327 3.82369 3.84693 3.99182 4.00698 4.07920 4.12455 4.17879 4.19493 4.29915 4.31604 4.37468 4.41160 4.43945 4.46788 4.50094 4.53436 4.67211 4.70758 4.84937 4.88434 4.98504 5.02663 5.08901 5.17475 5.18281 5.24450 5.26416 5.33071 5.35160 5.42429 5.47530 5.52257 5.57479 5.70919 6.29937 6.54140 6.61138 6.66416 6.70754 7.20818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.086 4.086 3 Si 0.769 3.231 4 C -0.125 4.125 5 C -0.078 4.078 6 C -0.198 4.198 7 C 0.121 3.879 8 O -0.320 6.320 9 C 0.034 3.966 10 C 0.512 3.488 11 O -0.573 6.573 12 N -0.704 5.704 13 C 0.143 3.857 14 H 0.063 0.937 15 C -0.121 4.121 16 C -0.105 4.105 17 C -0.039 4.039 18 H 0.134 0.866 19 C 0.409 3.591 20 N -0.545 5.545 21 C 0.173 3.827 22 C -0.319 4.319 23 C 0.509 3.491 24 O -0.593 6.593 25 N -0.615 5.615 26 C -0.094 4.094 27 C -0.116 4.116 28 C -0.167 4.167 29 C -0.062 4.062 30 H 0.394 0.606 31 H 0.091 0.909 32 H -0.295 1.295 33 H -0.290 1.290 34 H 0.152 0.848 35 H 0.169 0.831 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.422 0.578 39 H 0.048 0.952 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.198 0.802 44 H 0.158 0.842 45 H 0.429 0.571 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.099 0.901 49 H 0.083 0.917 50 H 0.127 0.873 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.560 8.337 5.586 11.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.194 4.194 3 Si 0.674 3.326 4 C -0.125 4.125 5 C -0.095 4.095 6 C -0.216 4.216 7 C 0.076 3.924 8 O -0.233 6.233 9 C -0.044 4.044 10 C 0.298 3.702 11 O -0.451 6.451 12 N -0.358 5.358 13 C 0.039 3.961 14 H 0.081 0.919 15 C -0.160 4.160 16 C -0.144 4.144 17 C -0.059 4.059 18 H 0.152 0.848 19 C 0.144 3.856 20 N -0.268 5.268 21 C 0.033 3.967 22 C -0.343 4.343 23 C 0.309 3.691 24 O -0.476 6.476 25 N -0.253 5.253 26 C -0.132 4.132 27 C -0.153 4.153 28 C -0.186 4.186 29 C -0.081 4.081 30 H 0.244 0.756 31 H 0.109 0.891 32 H -0.223 1.223 33 H -0.218 1.218 34 H 0.169 0.831 35 H 0.186 0.814 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.261 0.739 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.214 0.786 44 H 0.176 0.824 45 H 0.269 0.731 46 H 0.101 0.899 47 H 0.091 0.909 48 H 0.117 0.883 49 H 0.102 0.898 50 H 0.145 0.855 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.377 7.549 4.907 11.033 hybrid contribution -1.957 0.075 -0.588 2.045 sum 4.420 7.623 4.319 9.814 Atomic orbital electron populations 1.86550 1.18867 1.80705 1.50970 1.25046 0.83830 1.12086 0.98458 0.94231 0.90136 0.71771 0.76415 1.19458 1.01137 0.94555 0.97375 1.21027 0.95922 0.99938 0.92639 1.21486 1.05857 0.93234 1.01058 1.19178 0.94676 0.91972 0.86588 1.86129 1.65190 1.40339 1.31618 1.22799 0.97725 0.94307 0.89578 1.20526 0.78351 0.87472 0.83807 1.90774 1.55369 1.20308 1.78697 1.45730 1.51380 1.16936 1.21752 1.21061 0.94905 0.95005 0.85153 0.91866 1.21838 0.97934 1.01516 0.94716 1.21496 0.95151 0.99918 0.97851 1.20686 0.97100 0.98134 0.90011 0.84819 1.23755 0.85548 0.90898 0.85352 1.68389 1.17176 1.07498 1.33742 1.23177 0.92431 0.94171 0.86886 1.23004 1.05980 1.03580 1.01766 1.17662 0.83617 0.84047 0.83736 1.90988 1.59128 1.73196 1.24274 1.44632 1.39935 1.31554 1.09138 1.21339 0.96705 1.01672 0.93514 1.21785 0.95001 1.00856 0.97709 1.20617 1.01575 1.01342 0.95067 1.20909 0.96927 0.94178 0.96037 0.75610 0.89074 1.22250 1.21778 0.83105 0.81405 0.85825 0.85346 0.73935 0.93335 0.88733 0.90561 0.92130 0.78552 0.82389 0.73074 0.89859 0.90942 0.88282 0.89794 0.85484 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.27 12.74 -148.98 -1.90 -3.16 16 2 C -0.09 0.09 2.81 71.24 0.20 0.29 16 3 Si 0.77 -2.80 29.78 68.60 2.04 -0.76 16 4 C -0.12 -0.24 5.42 -19.85 -0.11 -0.34 16 5 C -0.08 0.12 8.66 22.26 0.19 0.31 16 6 C -0.20 0.49 9.04 22.37 0.20 0.69 16 7 C 0.12 0.41 6.69 22.50 0.15 0.56 16 8 O -0.32 -1.61 9.67 -73.38 -0.71 -2.32 16 9 C 0.03 -0.17 5.22 71.24 0.37 0.20 16 10 C 0.51 -0.05 7.87 87.66 0.69 0.64 16 11 O -0.57 -7.00 16.16 16.00 0.26 -6.74 16 12 N -0.70 6.03 5.08 -442.53 -2.25 3.79 16 13 C 0.14 -1.00 2.45 44.99 0.11 -0.89 16 14 H 0.06 0.00 7.58 -2.38 -0.02 -0.01 16 15 C -0.12 0.86 5.49 30.59 0.17 1.03 16 16 C -0.10 0.77 5.19 30.59 0.16 0.93 16 17 C -0.04 0.40 2.48 -11.54 -0.03 0.37 16 18 H 0.13 -2.14 8.14 -2.39 -0.02 -2.16 16 19 C 0.41 -1.68 6.73 138.18 0.93 -0.75 16 20 N -0.54 0.76 9.11 -187.56 -1.71 -0.95 16 21 C 0.17 -0.25 11.20 83.96 0.94 0.69 16 22 C -0.32 -1.00 10.07 22.48 0.23 -0.77 16 23 C 0.51 3.68 7.75 84.89 0.66 4.34 16 24 O -0.59 -9.88 17.97 -5.25 -0.09 -9.97 16 25 N -0.62 0.93 5.25 -310.69 -1.63 -0.70 16 26 C -0.09 0.94 4.67 30.59 0.14 1.08 16 27 C -0.12 1.47 5.39 30.59 0.16 1.64 16 28 C -0.17 -0.92 9.99 22.37 0.22 -0.70 16 29 C -0.06 -0.26 9.60 22.26 0.21 -0.04 16 30 H 0.39 -2.26 8.74 -74.05 -0.65 -2.90 16 31 H 0.09 -0.41 7.96 -2.39 -0.02 -0.43 16 32 H -0.29 -0.86 7.11 99.48 0.71 -0.16 16 33 H -0.29 -0.30 7.11 99.48 0.71 0.40 16 34 H 0.15 -1.00 4.87 -2.91 -0.01 -1.01 16 35 H 0.17 -1.79 6.30 -2.91 -0.02 -1.81 16 36 H 0.12 -1.41 7.66 -2.39 -0.02 -1.42 16 37 H 0.13 -1.55 7.66 -2.38 -0.02 -1.57 16 38 H 0.42 -7.06 8.60 -92.71 -0.80 -7.86 16 39 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.09 -1.10 8.14 -2.38 -0.02 -1.12 16 41 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 42 H 0.06 -0.18 8.14 -2.38 -0.02 -0.19 16 43 H 0.20 -1.51 8.06 -2.91 -0.02 -1.53 16 44 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 45 H 0.43 -2.70 8.78 -92.71 -0.81 -3.52 16 46 H 0.08 -0.87 8.14 -2.38 -0.02 -0.89 16 47 H 0.07 -0.42 7.75 -2.39 -0.02 -0.44 16 48 H 0.10 -1.71 8.14 -2.39 -0.02 -1.73 16 49 H 0.08 -1.06 8.14 -2.38 -0.02 -1.08 16 50 H 0.13 0.73 8.06 -2.91 -0.02 0.70 16 51 H 0.13 0.37 8.06 -2.91 -0.02 0.34 16 Total: 0.00 -38.72 420.00 -1.60 -40.32 By element: Atomic # 1 Polarization: -27.55 SS G_CDS: -1.22 Total: -28.77 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 5.61 Total: 9.28 kcal Atomic # 7 Polarization: 7.72 SS G_CDS: -5.59 Total: 2.13 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -2.44 Total: -22.20 kcal Atomic # 14 Polarization: -2.80 SS G_CDS: 2.04 Total: -0.76 kcal Total: -38.72 -1.60 -40.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_2989410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.543 kcal (2) G-P(sol) polarization free energy of solvation -38.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds