Wall clock time and date at job start Sat Mar 6 2021 19:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.47185 * 2 1 4 4 C 1.50698 * 109.47277 * 120.00274 * 2 1 3 5 5 C 1.38264 * 119.94475 * 64.99381 * 4 2 1 6 6 C 1.38143 * 120.05673 * 180.02562 * 5 4 2 7 7 C 1.38739 * 119.94250 * 0.02562 * 6 5 4 8 8 O 1.35894 * 120.05458 * 180.02562 * 7 6 5 9 9 C 1.42898 * 117.00201 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47563 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47400 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99769 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00255 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00372 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.46928 * 325.00350 * 14 13 11 16 16 C 1.52998 * 109.46679 * 85.00195 * 14 13 11 17 17 C 1.53006 * 109.47053 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46714 * 299.99774 * 17 16 14 19 19 H 1.08999 * 109.47424 * 300.00355 * 18 17 16 20 20 C 1.50703 * 109.47011 * 179.97438 * 18 17 16 21 21 N 1.30632 * 119.25541 * 264.98192 * 20 18 17 22 22 C 1.33526 * 121.50239 * 180.02562 * 21 20 18 23 23 C 1.36196 * 119.91014 * 359.97438 * 22 21 20 24 24 C 1.41019 * 118.59460 * 0.02562 * 23 22 21 25 25 O 1.21982 * 120.70979 * 179.97438 * 24 23 22 26 26 N 1.34754 * 119.24954 * 85.00148 * 20 18 17 27 27 C 1.52998 * 109.47176 * 60.00301 * 18 17 16 28 28 C 1.52999 * 109.47253 * 205.00070 * 14 13 11 29 29 C 1.38727 * 119.88722 * 0.27526 * 7 6 5 30 30 C 1.38147 * 119.94452 * 359.42608 * 29 7 6 31 31 H 0.96698 * 113.99929 * 300.00660 * 1 2 3 32 32 H 1.08999 * 109.46799 * 239.99911 * 2 1 3 33 33 H 1.48501 * 109.99977 * 299.99723 * 3 2 1 34 34 H 1.48498 * 110.00010 * 61.32043 * 3 2 1 35 35 H 1.08004 * 119.97134 * 359.97438 * 5 4 2 36 36 H 1.08001 * 120.03017 * 180.02562 * 6 5 4 37 37 H 1.09005 * 109.47183 * 60.00149 * 9 8 7 38 38 H 1.08996 * 109.47239 * 300.00241 * 9 8 7 39 39 H 1.08998 * 109.47212 * 59.99784 * 10 9 8 40 40 H 1.09003 * 109.47080 * 299.99902 * 10 9 8 41 41 H 0.97003 * 119.99883 * 0.02562 * 13 11 10 42 42 H 1.09006 * 109.47274 * 299.99758 * 16 14 13 43 43 H 1.08999 * 109.47635 * 60.00073 * 16 14 13 44 44 H 1.09000 * 109.47273 * 180.02562 * 17 16 14 45 45 H 1.08999 * 109.47192 * 59.99370 * 17 16 14 46 46 H 1.08003 * 120.04222 * 180.02562 * 22 21 20 47 47 H 1.08008 * 120.70116 * 180.02562 * 23 22 21 48 48 H 0.96998 * 120.03991 * 359.72615 * 26 20 18 49 49 H 1.08999 * 109.47635 * 59.99849 * 27 18 17 50 50 H 1.09006 * 109.47274 * 180.02562 * 27 18 17 51 51 H 1.09000 * 109.46965 * 60.00290 * 28 14 13 52 52 H 1.08999 * 109.46962 * 299.99866 * 28 14 13 53 53 H 1.08004 * 120.02491 * 179.71833 * 29 7 6 54 54 H 1.07999 * 119.97234 * 180.27020 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6840 -2.0605 1.3972 6 6 2.1429 -2.7140 2.5244 7 6 2.8522 -2.0142 3.4899 8 8 3.3052 -2.6549 4.5994 9 6 4.0285 -1.8717 5.5510 10 6 4.4549 -2.7583 6.7227 11 6 5.2170 -1.9322 7.7265 12 8 5.4014 -0.7506 7.5244 13 7 5.6937 -2.5063 8.8488 14 6 6.4351 -1.7033 9.8244 15 1 7.0249 -0.9501 9.3019 16 6 5.4504 -1.0137 10.7709 17 6 6.2246 -0.1745 11.7894 18 6 7.1560 -1.0823 12.5953 19 1 6.5665 -1.8355 13.1181 20 6 7.9190 -0.2557 13.5981 21 7 9.1121 0.1790 13.2914 22 6 9.8278 0.9143 14.1458 23 6 9.3148 1.2263 15.3683 24 6 8.0269 0.7571 15.6996 25 8 7.5304 1.0133 16.7839 26 7 7.3552 0.0179 14.7911 27 6 8.1406 -1.7718 11.6489 28 6 7.3661 -2.6114 10.6303 29 6 3.0937 -0.6584 3.3231 30 6 2.6379 -0.0108 2.1911 31 1 -0.3933 0.4418 0.7650 32 1 1.7923 -0.5139 -0.8900 33 1 1.5615 2.4678 -1.2085 34 1 1.5879 2.4585 1.2242 35 1 1.1307 -2.6045 0.6459 36 1 1.9498 -3.7686 2.6541 37 1 3.3920 -1.0661 5.9173 38 1 4.9131 -1.4481 5.0757 39 1 5.0914 -3.5636 6.3561 40 1 3.5704 -3.1822 7.1983 41 1 5.5465 -3.4514 9.0103 42 1 4.7871 -0.3667 10.1968 43 1 4.8606 -1.7668 11.2934 44 1 5.5231 0.3164 12.4640 45 1 6.8142 0.5786 11.2666 46 1 10.8118 1.2618 13.8675 47 1 9.8825 1.8206 16.0692 48 1 6.4664 -0.3126 14.9954 49 1 8.7302 -1.0187 11.1261 50 1 8.8039 -2.4189 12.2230 51 1 8.0676 -3.1027 9.9560 52 1 6.7763 -3.3645 11.1528 53 1 3.6417 -0.1105 4.0755 54 1 2.8295 1.0438 2.0588 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_4549602.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:58:48 Heat of formation + Delta-G solvation = -84.979890 kcal Electronic energy + Delta-G solvation = -35740.376673 eV Core-core repulsion = 30836.765613 eV Total energy + Delta-G solvation = -4903.611060 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.188 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.90251 -41.42098 -40.98350 -39.68115 -39.16525 -38.47409 -37.29360 -35.85802 -35.13776 -33.47775 -32.48337 -32.00171 -31.78066 -31.43213 -30.02123 -26.72533 -26.01655 -25.56123 -25.02682 -23.72283 -23.55616 -22.57528 -22.13452 -21.41300 -20.74212 -19.77708 -19.49916 -19.14534 -18.43038 -17.85690 -17.64683 -17.46117 -17.43160 -17.06169 -16.94525 -16.38564 -16.16732 -16.06003 -15.92194 -15.64447 -15.61142 -15.30795 -15.15718 -14.78001 -14.74127 -14.48651 -14.41638 -14.29002 -14.07432 -14.04132 -13.87235 -13.49292 -13.40390 -13.15650 -12.84663 -12.81298 -12.48819 -12.32465 -12.27483 -12.11070 -12.05959 -12.03499 -11.76477 -11.59325 -11.58025 -11.38955 -11.30502 -11.09607 -10.92766 -10.59203 -10.04742 -10.03062 -9.67471 -9.21899 -4.93466 -0.46014 0.28528 0.31338 0.67299 1.31580 1.55383 1.57772 1.59320 1.75244 1.93655 2.49204 2.52424 2.65498 2.78845 3.41548 3.44476 3.56534 3.60500 3.65757 3.72488 3.73382 3.83598 3.90231 3.93455 3.99238 4.05700 4.17015 4.19720 4.27179 4.29772 4.35629 4.37694 4.41274 4.46917 4.49955 4.53516 4.57014 4.66933 4.70814 4.72671 4.81605 4.84553 4.88191 4.98282 5.03371 5.08956 5.18237 5.18812 5.24245 5.29484 5.33033 5.34868 5.45125 5.47630 5.49937 5.59232 5.72814 6.33414 6.48927 6.54920 6.66055 6.70361 7.24458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.074 4.074 3 Si 0.759 3.241 4 C -0.158 4.158 5 C -0.058 4.058 6 C -0.158 4.158 7 C 0.124 3.876 8 O -0.321 6.321 9 C 0.072 3.928 10 C -0.133 4.133 11 C 0.519 3.481 12 O -0.583 6.583 13 N -0.711 5.711 14 C 0.142 3.858 15 H 0.066 0.934 16 C -0.120 4.120 17 C -0.104 4.104 18 C -0.040 4.040 19 H 0.132 0.868 20 C 0.409 3.591 21 N -0.545 5.545 22 C 0.173 3.827 23 C -0.319 4.319 24 C 0.509 3.491 25 O -0.593 6.593 26 N -0.615 5.615 27 C -0.093 4.093 28 C -0.117 4.117 29 C -0.210 4.210 30 C -0.082 4.082 31 H 0.385 0.615 32 H 0.126 0.874 33 H -0.302 1.302 34 H -0.286 1.286 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.419 0.581 42 H 0.052 0.948 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.198 0.802 47 H 0.158 0.842 48 H 0.428 0.572 49 H 0.073 0.927 50 H 0.080 0.920 51 H 0.081 0.919 52 H 0.094 0.906 53 H 0.139 0.861 54 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.675 -7.191 -1.505 7.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.183 4.183 3 Si 0.665 3.335 4 C -0.159 4.159 5 C -0.076 4.076 6 C -0.177 4.177 7 C 0.079 3.921 8 O -0.235 6.235 9 C -0.004 4.004 10 C -0.173 4.173 11 C 0.307 3.693 12 O -0.463 6.463 13 N -0.363 5.363 14 C 0.037 3.963 15 H 0.084 0.916 16 C -0.159 4.159 17 C -0.144 4.144 18 C -0.060 4.060 19 H 0.149 0.851 20 C 0.144 3.856 21 N -0.268 5.268 22 C 0.033 3.967 23 C -0.343 4.343 24 C 0.309 3.691 25 O -0.476 6.476 26 N -0.253 5.253 27 C -0.132 4.132 28 C -0.155 4.155 29 C -0.229 4.229 30 C -0.099 4.099 31 H 0.234 0.766 32 H 0.144 0.856 33 H -0.230 1.230 34 H -0.213 1.213 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.257 0.743 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.215 0.785 47 H 0.176 0.824 48 H 0.269 0.731 49 H 0.092 0.908 50 H 0.099 0.901 51 H 0.100 0.900 52 H 0.113 0.887 53 H 0.157 0.843 54 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.011 -5.909 -2.117 6.961 hybrid contribution -1.731 0.296 1.729 2.465 sum 1.279 -5.613 -0.387 5.770 Atomic orbital electron populations 1.86566 1.18638 1.80301 1.50150 1.25087 0.83277 1.11287 0.98684 0.94120 0.90556 0.72631 0.76182 1.20232 1.02655 0.95182 0.97833 1.20994 0.96547 0.93669 0.96439 1.20681 1.01764 1.01400 0.93829 1.19179 0.94505 0.91278 0.87136 1.85957 1.69262 1.38844 1.29421 1.22470 0.95761 0.93664 0.88461 1.21447 1.03056 0.99179 0.93617 1.20595 0.78668 0.87508 0.82577 1.90746 1.59602 1.18091 1.77874 1.45916 1.56035 1.14274 1.20059 1.21038 0.92537 0.93849 0.88835 0.91579 1.21830 0.97878 0.99592 0.96603 1.21499 0.97640 0.97617 0.97607 1.20684 0.96092 0.96038 0.93167 0.85056 1.23750 0.89454 0.88764 0.83585 1.68390 1.05765 1.18340 1.34273 1.23180 0.99347 0.86626 0.87501 1.23004 0.96826 1.12114 1.02382 1.17665 0.88061 0.79379 0.83965 1.90990 1.71672 1.60913 1.24019 1.44635 1.21194 1.44574 1.14867 1.21342 0.96528 0.99248 0.96049 1.21793 0.98286 0.97793 0.97655 1.21405 1.06568 0.93935 1.00958 1.21020 0.96087 1.00063 0.92764 0.76591 0.85593 1.23025 1.21308 0.84139 0.83958 0.91878 0.91542 0.85511 0.85636 0.74321 0.92959 0.89146 0.90584 0.91922 0.78520 0.82383 0.73093 0.90790 0.90102 0.90031 0.88708 0.84329 0.84174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.67 12.83 -148.98 -1.91 -3.58 16 2 C -0.07 0.00 2.80 71.24 0.20 0.20 16 3 Si 0.76 -0.63 29.88 68.60 2.05 1.42 16 4 C -0.16 -0.16 5.35 -19.85 -0.11 -0.26 16 5 C -0.06 -0.08 9.68 22.25 0.22 0.14 16 6 C -0.16 -0.31 9.99 22.37 0.22 -0.08 16 7 C 0.12 0.38 6.69 22.51 0.15 0.53 16 8 O -0.32 -0.57 10.14 -92.36 -0.94 -1.51 16 9 C 0.07 -0.08 4.03 71.98 0.29 0.21 16 10 C -0.13 0.93 6.07 29.85 0.18 1.11 16 11 C 0.52 -1.50 7.79 87.66 0.68 -0.82 16 12 O -0.58 -3.80 15.64 -3.03 -0.05 -3.85 16 13 N -0.71 6.37 5.08 -442.54 -2.25 4.12 16 14 C 0.14 -1.09 2.45 44.99 0.11 -0.98 16 15 H 0.07 -0.10 7.58 -2.38 -0.02 -0.12 16 16 C -0.12 0.96 5.49 30.60 0.17 1.13 16 17 C -0.10 0.86 5.19 30.60 0.16 1.02 16 18 C -0.04 0.41 2.48 -11.54 -0.03 0.38 16 19 H 0.13 -2.07 8.14 -2.39 -0.02 -2.09 16 20 C 0.41 -1.82 6.73 138.18 0.93 -0.89 16 21 N -0.54 0.99 9.11 -187.55 -1.71 -0.72 16 22 C 0.17 -0.33 11.20 83.96 0.94 0.61 16 23 C -0.32 -0.88 10.07 22.48 0.23 -0.65 16 24 C 0.51 3.52 7.75 84.89 0.66 4.18 16 25 O -0.59 -9.71 17.97 -5.26 -0.09 -9.80 16 26 N -0.62 1.11 5.25 -310.70 -1.63 -0.52 16 27 C -0.09 0.94 4.67 30.61 0.14 1.08 16 28 C -0.12 1.46 5.39 30.61 0.17 1.63 16 29 C -0.21 -0.44 9.04 22.36 0.20 -0.24 16 30 C -0.08 -0.07 8.66 22.25 0.19 0.13 16 31 H 0.38 -0.84 8.70 -74.06 -0.64 -1.48 16 32 H 0.13 -0.25 7.96 -2.39 -0.02 -0.27 16 33 H -0.30 -2.03 7.11 99.48 0.71 -1.32 16 34 H -0.29 -0.92 7.00 99.48 0.70 -0.22 16 35 H 0.14 -0.11 8.06 -2.91 -0.02 -0.14 16 36 H 0.14 -0.10 8.06 -2.91 -0.02 -0.12 16 37 H 0.06 0.03 7.61 -2.38 -0.02 0.02 16 38 H 0.07 0.01 7.63 -2.39 -0.02 0.00 16 39 H 0.13 -1.35 8.14 -2.39 -0.02 -1.36 16 40 H 0.13 -1.32 8.14 -2.39 -0.02 -1.34 16 41 H 0.42 -6.45 8.60 -92.71 -0.80 -7.25 16 42 H 0.05 -0.12 8.14 -2.38 -0.02 -0.14 16 43 H 0.09 -1.07 8.14 -2.39 -0.02 -1.08 16 44 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 45 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 46 H 0.20 -1.60 8.06 -2.91 -0.02 -1.63 16 47 H 0.16 0.26 8.06 -2.91 -0.02 0.23 16 48 H 0.43 -2.80 8.78 -92.71 -0.81 -3.61 16 49 H 0.07 -0.46 7.76 -2.39 -0.02 -0.48 16 50 H 0.08 -0.82 8.14 -2.38 -0.02 -0.84 16 51 H 0.08 -0.98 8.14 -2.39 -0.02 -1.00 16 52 H 0.09 -1.55 8.14 -2.39 -0.02 -1.57 16 53 H 0.14 0.06 6.30 -2.91 -0.02 0.04 16 54 H 0.14 -0.33 4.83 -2.91 -0.01 -0.34 16 Total: 0.00 -31.02 440.94 -2.09 -33.10 By element: Atomic # 1 Polarization: -25.83 SS G_CDS: -1.26 Total: -27.09 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 5.70 Total: 8.43 kcal Atomic # 7 Polarization: 8.47 SS G_CDS: -5.59 Total: 2.88 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -2.99 Total: -18.75 kcal Atomic # 14 Polarization: -0.63 SS G_CDS: 2.05 Total: 1.42 kcal Total: -31.02 -2.09 -33.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_4549602.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.875 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds