Wall clock time and date at job start Sat Mar 6 2021 19:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86297 * 109.47191 * 2 1 4 4 C 1.50696 * 109.47172 * 120.00079 * 2 1 3 5 5 C 1.38240 * 119.97662 * 244.99607 * 4 2 1 6 6 C 1.38288 * 120.11591 * 180.02562 * 5 4 2 7 7 C 1.38119 * 120.05366 * 0.24016 * 6 5 4 8 8 C 1.38757 * 119.94413 * 359.50981 * 7 6 5 9 9 O 1.35896 * 120.05426 * 180.21111 * 8 7 6 10 10 C 1.42901 * 117.00083 * 0.29963 * 9 8 7 11 11 C 1.53007 * 109.47274 * 180.02562 * 10 9 8 12 12 C 1.50689 * 109.47307 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00182 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00235 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99997 * 179.97438 * 14 12 11 16 16 H 1.08991 * 109.47455 * 325.00453 * 15 14 12 17 17 C 1.52999 * 109.47061 * 85.00723 * 15 14 12 18 18 C 1.52997 * 109.47611 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.46969 * 300.00100 * 18 17 15 20 20 H 1.08999 * 109.47130 * 299.99856 * 19 18 17 21 21 C 1.50698 * 109.47271 * 179.97438 * 19 18 17 22 22 N 1.30642 * 119.24898 * 264.99985 * 21 19 18 23 23 C 1.33526 * 121.50056 * 179.97438 * 22 21 19 24 24 C 1.36201 * 119.90915 * 0.02562 * 23 22 21 25 25 C 1.41017 * 118.59449 * 359.97438 * 24 23 22 26 26 O 1.21986 * 120.70852 * 180.02562 * 25 24 23 27 27 N 1.34746 * 119.25622 * 84.72630 * 21 19 18 28 28 C 1.52997 * 109.47365 * 59.99714 * 19 18 17 29 29 C 1.53001 * 109.46986 * 205.00496 * 15 14 12 30 30 C 1.38171 * 119.97135 * 65.02285 * 4 2 1 31 31 H 0.96702 * 113.99371 * 299.99409 * 1 2 3 32 32 H 1.09000 * 109.46743 * 239.99998 * 2 1 3 33 33 H 1.48499 * 110.00134 * 300.00481 * 3 2 1 34 34 H 1.48504 * 109.99833 * 61.32169 * 3 2 1 35 35 H 1.08006 * 119.93931 * 0.02562 * 5 4 2 36 36 H 1.08002 * 119.96980 * 179.97438 * 6 5 4 37 37 H 1.07998 * 120.02956 * 179.72220 * 7 6 5 38 38 H 1.09000 * 109.47190 * 299.99904 * 10 9 8 39 39 H 1.09000 * 109.47473 * 60.00460 * 10 9 8 40 40 H 1.09000 * 109.46703 * 299.99919 * 11 10 9 41 41 H 1.08998 * 109.47110 * 59.99057 * 11 10 9 42 42 H 0.97003 * 119.99793 * 0.02562 * 14 12 11 43 43 H 1.08999 * 109.47360 * 300.00140 * 17 15 14 44 44 H 1.09005 * 109.47333 * 59.99438 * 17 15 14 45 45 H 1.09001 * 109.47640 * 180.02562 * 18 17 15 46 46 H 1.09005 * 109.46972 * 59.99534 * 18 17 15 47 47 H 1.08001 * 120.04214 * 180.02562 * 23 22 21 48 48 H 1.08004 * 120.69931 * 180.02562 * 24 23 22 49 49 H 0.97003 * 120.04169 * 359.97438 * 27 21 19 50 50 H 1.09000 * 109.47283 * 180.02562 * 28 19 18 51 51 H 1.09006 * 109.47401 * 59.99579 * 28 19 18 52 52 H 1.09005 * 109.46811 * 300.00197 * 29 15 14 53 53 H 1.08990 * 109.47434 * 60.00240 * 29 15 14 54 54 H 1.07997 * 120.02764 * 0.02562 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6388 -0.0118 2.1909 6 6 3.1016 -0.6610 3.3208 7 6 2.8621 -2.0107 3.4901 8 6 2.1478 -2.7131 2.5300 9 8 1.9072 -4.0402 2.6963 10 6 2.4136 -4.6471 3.8868 11 6 2.0478 -6.1328 3.8972 12 6 2.5822 -6.7730 5.1523 13 8 3.1950 -6.1066 5.9594 14 7 2.3785 -8.0859 5.3785 15 6 2.8986 -8.7084 6.5985 16 1 3.8505 -8.2486 6.8636 17 6 1.8995 -8.5069 7.7396 18 6 2.4423 -9.1574 9.0136 19 6 2.6477 -10.6545 8.7740 20 1 1.6956 -11.1140 8.5087 21 6 3.1829 -11.2953 10.0286 22 7 4.4726 -11.4533 10.1645 23 6 4.9954 -12.0149 11.2573 24 6 4.1776 -12.4378 12.2610 25 6 2.7854 -12.2673 12.1144 26 8 2.0177 -12.6316 12.9895 27 7 2.3208 -11.6872 10.9872 28 6 3.6467 -10.8561 7.6329 29 6 3.1044 -10.2055 6.3593 30 6 1.6850 -2.0597 1.3974 31 1 -0.3932 0.4417 0.7651 32 1 1.7923 -0.5138 -0.8900 33 1 1.5615 2.4679 -1.2084 34 1 1.5880 2.4585 1.2243 35 1 2.8304 1.0428 2.0585 36 1 3.6544 -0.1130 4.0695 37 1 3.2276 -2.5182 4.3705 38 1 3.4979 -4.5401 3.9163 39 1 1.9764 -4.1589 4.7578 40 1 0.9635 -6.2402 3.8675 41 1 2.4851 -6.6207 3.0262 42 1 1.8881 -8.6189 4.7332 43 1 1.7528 -7.4403 7.9100 44 1 0.9474 -8.9667 7.4745 45 1 1.7304 -9.0142 9.8265 46 1 3.3945 -8.6979 9.2789 47 1 6.0652 -12.1335 11.3451 48 1 4.5868 -12.8934 13.1506 49 1 1.3674 -11.5556 10.8662 50 1 3.7927 -11.9227 7.4620 51 1 4.5989 -10.3966 7.8981 52 1 2.1523 -10.6653 6.0942 53 1 3.8160 -10.3491 5.5464 54 1 1.1330 -2.6052 0.6464 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_4549614.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:58:52 Heat of formation + Delta-G solvation = -84.993184 kcal Electronic energy + Delta-G solvation = -35742.995006 eV Core-core repulsion = 30839.383369 eV Total energy + Delta-G solvation = -4903.611637 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.188 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.90607 -41.43602 -40.99974 -39.68913 -39.14181 -38.47808 -37.37863 -35.86582 -35.14692 -33.45123 -32.50290 -32.39656 -31.79476 -30.92143 -29.95576 -27.06978 -26.13597 -25.53980 -24.83123 -23.72149 -23.68911 -22.71569 -21.95996 -21.41543 -20.74765 -19.77894 -19.37418 -19.14646 -18.18811 -17.82677 -17.70822 -17.47053 -17.38422 -17.12136 -17.05750 -16.79502 -16.24421 -16.07605 -15.93148 -15.63563 -15.54100 -15.32442 -15.16509 -14.91543 -14.72513 -14.49212 -14.42319 -14.12830 -14.08427 -14.05297 -13.86929 -13.42697 -13.22318 -13.15533 -12.94316 -12.84493 -12.51080 -12.39832 -12.32148 -12.11661 -12.03902 -11.95884 -11.80490 -11.59872 -11.56254 -11.39437 -11.31361 -11.10016 -10.94951 -10.65147 -10.06026 -9.95570 -9.67722 -9.27547 -4.89723 -0.46371 0.19517 0.39116 0.66959 1.30104 1.55012 1.57167 1.62181 1.73886 1.97146 2.48733 2.51394 2.65480 2.78363 3.40832 3.42366 3.55823 3.59470 3.64394 3.66390 3.71773 3.85095 3.90857 3.96611 4.01934 4.09645 4.16431 4.18718 4.23381 4.28790 4.29255 4.36644 4.39649 4.42849 4.49516 4.52800 4.54958 4.63732 4.68759 4.70067 4.79069 4.83861 4.87845 4.97870 5.02549 5.08163 5.17446 5.23436 5.25853 5.32234 5.34549 5.37804 5.43849 5.44128 5.47090 5.58127 5.70242 6.33407 6.47395 6.53042 6.65773 6.70007 7.22418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.086 4.086 3 Si 0.775 3.225 4 C -0.081 4.081 5 C -0.159 4.159 6 C -0.076 4.076 7 C -0.210 4.210 8 C 0.117 3.883 9 O -0.324 6.324 10 C 0.074 3.926 11 C -0.134 4.134 12 C 0.520 3.480 13 O -0.583 6.583 14 N -0.711 5.711 15 C 0.142 3.858 16 H 0.066 0.934 17 C -0.121 4.121 18 C -0.104 4.104 19 C -0.040 4.040 20 H 0.132 0.868 21 C 0.409 3.591 22 N -0.545 5.545 23 C 0.173 3.827 24 C -0.319 4.319 25 C 0.509 3.491 26 O -0.593 6.593 27 N -0.615 5.615 28 C -0.093 4.093 29 C -0.118 4.118 30 C -0.141 4.141 31 H 0.386 0.614 32 H 0.125 0.875 33 H -0.302 1.302 34 H -0.280 1.280 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.136 0.864 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.419 0.581 43 H 0.052 0.948 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.198 0.802 48 H 0.159 0.841 49 H 0.428 0.572 50 H 0.081 0.919 51 H 0.073 0.927 52 H 0.094 0.906 53 H 0.081 0.919 54 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 -1.347 -5.421 5.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.194 4.194 3 Si 0.680 3.320 4 C -0.081 4.081 5 C -0.176 4.176 6 C -0.094 4.094 7 C -0.229 4.229 8 C 0.072 3.928 9 O -0.238 6.238 10 C -0.002 4.002 11 C -0.174 4.174 12 C 0.307 3.693 13 O -0.463 6.463 14 N -0.363 5.363 15 C 0.037 3.963 16 H 0.084 0.916 17 C -0.159 4.159 18 C -0.143 4.143 19 C -0.060 4.060 20 H 0.149 0.851 21 C 0.145 3.855 22 N -0.268 5.268 23 C 0.033 3.967 24 C -0.343 4.343 25 C 0.309 3.691 26 O -0.476 6.476 27 N -0.253 5.253 28 C -0.132 4.132 29 C -0.155 4.155 30 C -0.159 4.159 31 H 0.235 0.765 32 H 0.143 0.857 33 H -0.231 1.231 34 H -0.207 1.207 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.154 0.846 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.257 0.743 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.215 0.785 48 H 0.176 0.824 49 H 0.269 0.731 50 H 0.099 0.901 51 H 0.092 0.908 52 H 0.113 0.887 53 H 0.100 0.900 54 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.466 -0.613 -5.406 5.973 hybrid contribution -2.042 -0.628 1.539 2.633 sum 0.424 -1.242 -3.867 4.083 Atomic orbital electron populations 1.86578 1.18438 1.80478 1.50114 1.25329 0.83507 1.12222 0.98381 0.93873 0.90308 0.71482 0.76370 1.20145 0.97927 0.93300 0.96757 1.21203 1.00923 1.00765 0.94751 1.21235 0.97277 0.93434 0.97433 1.21550 1.04127 0.96515 1.00709 1.19135 0.95694 0.83004 0.94936 1.85953 1.74698 1.20240 1.42956 1.22453 0.99188 0.93200 0.85341 1.21448 1.05363 0.93342 0.97198 1.20566 0.78729 0.82694 0.87286 1.90744 1.42943 1.63509 1.49108 1.45918 1.57461 1.08942 1.23942 1.21041 0.97048 0.94151 0.84022 0.91568 1.21828 0.99675 1.00625 0.93785 1.21498 1.02265 0.92116 0.98469 1.20681 1.01633 0.95714 0.87958 0.85059 1.23741 0.86101 0.86081 0.89621 1.68395 1.09506 1.23037 1.25838 1.23181 1.02465 0.85264 0.85750 1.23004 0.91570 1.13991 1.05747 1.17664 0.91288 0.78785 0.81322 1.90991 1.60757 1.54042 1.41801 1.44633 1.13886 1.49650 1.17095 1.21324 0.98051 1.02131 0.91649 1.21777 1.03633 0.91908 0.98225 1.20340 1.03923 0.94329 0.97339 0.76459 0.85680 1.23052 1.20700 0.83676 0.83093 0.84577 0.91652 0.91875 0.85695 0.85598 0.74329 0.92950 0.89160 0.90543 0.91911 0.78521 0.82371 0.73089 0.90076 0.90787 0.88724 0.90042 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.80 12.83 -148.98 -1.91 -3.72 16 2 C -0.09 0.00 2.80 71.23 0.20 0.20 16 3 Si 0.77 -1.61 29.88 68.60 2.05 0.43 16 4 C -0.08 -0.12 5.35 -19.88 -0.11 -0.22 16 5 C -0.16 0.07 8.67 22.28 0.19 0.27 16 6 C -0.08 0.01 10.04 22.25 0.22 0.23 16 7 C -0.21 -0.51 9.04 22.37 0.20 -0.31 16 8 C 0.12 0.53 6.69 22.51 0.15 0.68 16 9 O -0.32 -1.14 10.14 -92.38 -0.94 -2.08 16 10 C 0.07 0.00 4.03 71.98 0.29 0.29 16 11 C -0.13 0.79 6.07 29.85 0.18 0.97 16 12 C 0.52 -1.12 7.79 87.65 0.68 -0.44 16 13 O -0.58 -4.17 15.65 -3.04 -0.05 -4.22 16 14 N -0.71 5.93 5.08 -442.55 -2.25 3.69 16 15 C 0.14 -1.03 2.45 44.99 0.11 -0.92 16 16 H 0.07 -0.07 7.58 -2.39 -0.02 -0.09 16 17 C -0.12 0.92 5.49 30.59 0.17 1.09 16 18 C -0.10 0.83 5.19 30.59 0.16 0.99 16 19 C -0.04 0.40 2.48 -11.54 -0.03 0.38 16 20 H 0.13 -2.04 8.14 -2.39 -0.02 -2.06 16 21 C 0.41 -1.75 6.73 138.18 0.93 -0.82 16 22 N -0.54 0.91 9.11 -187.55 -1.71 -0.80 16 23 C 0.17 -0.31 11.20 83.96 0.94 0.63 16 24 C -0.32 -0.91 10.07 22.48 0.23 -0.68 16 25 C 0.51 3.57 7.75 84.88 0.66 4.23 16 26 O -0.59 -9.76 17.97 -5.27 -0.09 -9.86 16 27 N -0.62 1.02 5.25 -310.70 -1.63 -0.61 16 28 C -0.09 0.91 4.67 30.58 0.14 1.05 16 29 C -0.12 1.42 5.39 30.58 0.16 1.58 16 30 C -0.14 -0.59 9.62 22.37 0.22 -0.37 16 31 H 0.39 -0.90 8.70 -74.06 -0.64 -1.54 16 32 H 0.13 -0.18 7.96 -2.39 -0.02 -0.20 16 33 H -0.30 -1.67 7.11 99.48 0.71 -0.96 16 34 H -0.28 -0.36 7.01 99.48 0.70 0.34 16 35 H 0.15 -0.65 4.84 -2.91 -0.01 -0.66 16 36 H 0.15 -0.73 8.06 -2.91 -0.02 -0.75 16 37 H 0.14 0.13 6.30 -2.91 -0.02 0.11 16 38 H 0.07 0.09 7.61 -2.39 -0.02 0.07 16 39 H 0.06 0.10 7.63 -2.39 -0.02 0.08 16 40 H 0.12 -1.17 8.14 -2.39 -0.02 -1.19 16 41 H 0.13 -1.19 8.14 -2.39 -0.02 -1.21 16 42 H 0.42 -6.17 8.60 -92.71 -0.80 -6.97 16 43 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.09 -1.03 8.14 -2.38 -0.02 -1.05 16 45 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 46 H 0.06 -0.25 8.14 -2.38 -0.02 -0.27 16 47 H 0.20 -1.58 8.06 -2.91 -0.02 -1.60 16 48 H 0.16 0.27 8.06 -2.91 -0.02 0.24 16 49 H 0.43 -2.74 8.78 -92.71 -0.81 -3.55 16 50 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 51 H 0.07 -0.44 7.76 -2.38 -0.02 -0.46 16 52 H 0.09 -1.51 8.14 -2.38 -0.02 -1.52 16 53 H 0.08 -0.95 8.14 -2.39 -0.02 -0.97 16 54 H 0.13 0.56 8.06 -2.91 -0.02 0.53 16 Total: 0.00 -31.56 440.94 -2.09 -33.65 By element: Atomic # 1 Polarization: -24.05 SS G_CDS: -1.26 Total: -25.32 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 5.70 Total: 8.82 kcal Atomic # 7 Polarization: 7.87 SS G_CDS: -5.59 Total: 2.28 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -2.99 Total: -19.87 kcal Atomic # 14 Polarization: -1.61 SS G_CDS: 2.05 Total: 0.43 kcal Total: -31.56 -2.09 -33.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_4549614.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.341 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds