Wall clock time and date at job start Sat Mar 6 2021 19:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86295 * 109.46995 * 2 1 4 4 C 1.50708 * 109.46804 * 240.00239 * 2 1 3 5 5 C 1.38242 * 119.93960 * 120.00187 * 4 2 1 6 6 C 1.38175 * 120.05113 * 179.97438 * 5 4 2 7 7 C 1.38705 * 119.94565 * 0.02562 * 6 5 4 8 8 O 1.35898 * 120.05825 * 179.97438 * 7 6 5 9 9 C 1.42904 * 116.99722 * 0.02562 * 8 7 6 10 10 C 1.50696 * 109.47074 * 179.97438 * 9 8 7 11 11 O 1.21289 * 120.00131 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00317 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00529 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.46873 * 34.99870 * 13 12 10 15 15 C 1.53000 * 109.47431 * 155.00035 * 13 12 10 16 16 C 1.53006 * 109.47260 * 179.97438 * 15 13 12 17 17 C 1.52993 * 109.47061 * 300.00424 * 16 15 13 18 18 H 1.08999 * 109.47163 * 299.99857 * 17 16 15 19 19 C 1.50706 * 109.47148 * 179.97438 * 17 16 15 20 20 N 1.30639 * 119.24861 * 334.99883 * 19 17 16 21 21 C 1.33526 * 121.50455 * 179.97438 * 20 19 17 22 22 C 1.36200 * 119.90635 * 0.02562 * 21 20 19 23 23 C 1.41024 * 118.59703 * 359.97438 * 22 21 20 24 24 O 1.21977 * 120.71074 * 179.97438 * 23 22 21 25 25 N 1.34743 * 119.25535 * 154.72681 * 19 17 16 26 26 C 1.52997 * 109.47602 * 60.00006 * 17 16 15 27 27 C 1.52996 * 109.47291 * 275.00487 * 13 12 10 28 28 C 1.38760 * 119.88618 * 0.25396 * 7 6 5 29 29 N 1.48003 * 120.02657 * 179.72842 * 28 7 6 30 30 O 1.21796 * 119.99912 * 179.97438 * 29 28 7 31 31 O 1.21803 * 120.00178 * 359.97438 * 29 28 7 32 32 C 1.38116 * 119.94333 * 359.46524 * 28 7 6 33 33 H 0.96701 * 114.00067 * 59.99630 * 1 2 3 34 34 H 1.08994 * 109.47139 * 120.00233 * 2 1 3 35 35 H 1.48496 * 109.99962 * 60.00629 * 3 2 1 36 36 H 1.48502 * 109.99973 * 181.32120 * 3 2 1 37 37 H 1.07995 * 119.97625 * 0.02562 * 5 4 2 38 38 H 1.07998 * 120.02839 * 179.97438 * 6 5 4 39 39 H 1.09000 * 109.46989 * 60.00000 * 9 8 7 40 40 H 1.08998 * 109.46890 * 299.99787 * 9 8 7 41 41 H 0.97000 * 119.99841 * 0.02562 * 12 10 9 42 42 H 1.08999 * 109.46803 * 60.00193 * 15 13 12 43 43 H 1.08998 * 109.47154 * 300.00398 * 15 13 12 44 44 H 1.08996 * 109.47167 * 179.97438 * 16 15 13 45 45 H 1.09001 * 109.46425 * 59.99905 * 16 15 13 46 46 H 1.07994 * 120.04612 * 180.02562 * 21 20 19 47 47 H 1.07999 * 120.70335 * 180.02562 * 22 21 20 48 48 H 0.97000 * 120.04073 * 0.02562 * 25 19 17 49 49 H 1.09001 * 109.47659 * 59.99432 * 26 17 16 50 50 H 1.08995 * 109.47574 * 180.02562 * 26 17 16 51 51 H 1.08999 * 109.46985 * 299.99833 * 27 13 12 52 52 H 1.09005 * 109.47475 * 59.99633 * 27 13 12 53 53 H 1.08004 * 119.97047 * 180.27648 * 32 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2306 5 6 2.7261 -0.0374 -2.1397 6 6 3.1883 -0.6866 -3.2685 7 6 2.8538 -2.0145 -3.4892 8 8 3.3067 -2.6551 -4.5989 9 6 4.1237 -1.9000 -5.4958 10 6 4.5290 -2.7689 -6.6584 11 8 4.1547 -3.9213 -6.7138 12 7 5.3065 -2.2653 -7.6373 13 6 5.7001 -3.1098 -8.7678 14 1 4.8862 -3.7925 -9.0120 15 6 6.0076 -2.2285 -9.9801 16 6 6.4192 -3.1105 -11.1606 17 6 7.6653 -3.9151 -10.7859 18 1 8.4789 -3.2322 -10.5415 19 6 8.0704 -4.7844 -11.9484 20 7 7.1683 -5.1415 -12.8232 21 6 7.4775 -5.9102 -13.8704 22 6 8.7585 -6.3394 -14.0429 23 6 9.7325 -5.9539 -13.0987 24 8 10.8912 -6.3167 -13.2154 25 7 9.3559 -5.1709 -12.0651 26 6 7.3579 -4.7965 -9.5737 27 6 6.9460 -3.9150 -8.3935 28 6 2.0512 -2.6860 -2.5780 29 7 1.6875 -4.1012 -2.8135 30 8 0.9834 -4.6903 -2.0131 31 8 2.0923 -4.6768 -3.8077 32 6 1.5965 -2.0343 -1.4484 33 1 -0.3933 0.4417 -0.7650 34 1 1.7924 -0.5138 0.8899 35 1 1.5616 2.4678 1.2085 36 1 3.5346 1.7703 -0.0322 37 1 2.9865 0.9964 -1.9672 38 1 3.8087 -0.1603 -3.9787 39 1 5.0154 -1.5552 -4.9722 40 1 3.5624 -1.0406 -5.8624 41 1 5.6056 -1.3436 -7.5933 42 1 6.8215 -1.5458 -9.7359 43 1 5.1199 -1.6548 -10.2467 44 1 6.6378 -2.4826 -12.0244 45 1 5.6056 -3.7934 -11.4049 46 1 6.7130 -6.1910 -14.5795 47 1 9.0230 -6.9612 -14.8854 48 1 10.0092 -4.8903 -11.4052 49 1 6.5442 -5.4795 -9.8179 50 1 8.2457 -5.3695 -9.3064 51 1 7.7599 -3.2324 -8.1493 52 1 6.7270 -4.5429 -7.5298 53 1 0.9755 -2.5579 -0.7366 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_4549638.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:59:22 Heat of formation + Delta-G solvation = -73.026087 kcal Electronic energy + Delta-G solvation = -40979.669003 eV Core-core repulsion = 35401.097482 eV Total energy + Delta-G solvation = -5578.571521 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 431.166 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.28018 -42.89633 -41.76536 -40.95445 -39.82368 -39.25450 -38.41607 -37.58357 -37.34756 -35.85895 -35.16090 -33.48382 -32.67674 -32.20048 -31.78349 -30.75574 -29.11538 -27.81253 -26.57964 -25.79994 -25.32178 -24.08376 -23.70981 -22.94425 -22.58162 -21.56331 -20.85679 -20.49089 -19.77508 -19.75888 -19.20498 -19.13148 -18.62495 -18.41892 -18.08319 -17.79880 -17.53139 -17.24770 -17.08202 -16.97305 -16.32664 -16.11175 -16.01538 -15.78308 -15.63589 -15.58770 -15.28569 -15.12183 -14.98124 -14.69962 -14.44314 -14.09996 -14.06506 -13.91919 -13.87072 -13.70956 -13.40062 -13.20660 -13.14039 -12.69704 -12.48968 -12.36973 -12.30957 -12.26248 -12.23437 -12.18106 -12.09529 -12.02597 -11.93102 -11.58203 -11.38224 -11.29894 -11.08639 -10.90122 -10.82075 -10.55396 -10.07803 -9.76675 -9.67086 -4.98719 -1.30257 -0.45561 -0.22439 0.16966 0.36942 0.67767 1.25104 1.29185 1.53465 1.56458 1.64945 2.03705 2.07036 2.37237 2.50131 2.78941 3.13661 3.27688 3.40441 3.43060 3.52667 3.57125 3.66049 3.71134 3.72819 3.73199 3.81550 3.97587 4.00432 4.06210 4.18016 4.19492 4.30478 4.30743 4.36945 4.38796 4.42316 4.50407 4.52652 4.54472 4.65057 4.68461 4.85735 4.86588 4.88573 5.03862 5.08953 5.10366 5.18753 5.21211 5.25661 5.34353 5.35319 5.43993 5.48067 5.58746 5.79601 6.42585 6.54836 6.66576 6.70989 6.74270 7.25558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.084 4.084 3 Si 0.800 3.200 4 C -0.151 4.151 5 C -0.005 4.005 6 C -0.187 4.187 7 C 0.195 3.805 8 O -0.292 6.292 9 C 0.022 3.978 10 C 0.507 3.493 11 O -0.566 6.566 12 N -0.702 5.702 13 C 0.144 3.856 14 H 0.060 0.940 15 C -0.114 4.114 16 C -0.095 4.095 17 C -0.038 4.038 18 H 0.136 0.864 19 C 0.408 3.592 20 N -0.545 5.545 21 C 0.173 3.827 22 C -0.319 4.319 23 C 0.509 3.491 24 O -0.593 6.593 25 N -0.615 5.615 26 C -0.106 4.106 27 C -0.121 4.121 28 C -0.105 4.105 29 N 0.035 4.965 30 O -0.208 6.208 31 O -0.171 6.171 32 C -0.005 4.005 33 H 0.398 0.602 34 H 0.108 0.892 35 H -0.307 1.307 36 H -0.262 1.262 37 H 0.189 0.811 38 H 0.209 0.791 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.424 0.576 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.197 0.803 47 H 0.158 0.842 48 H 0.429 0.571 49 H 0.058 0.942 50 H 0.075 0.925 51 H 0.096 0.904 52 H 0.046 0.954 53 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 18.929 -1.091 19.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.191 4.191 3 Si 0.704 3.296 4 C -0.152 4.152 5 C -0.022 4.022 6 C -0.206 4.206 7 C 0.145 3.855 8 O -0.202 6.202 9 C -0.054 4.054 10 C 0.292 3.708 11 O -0.444 6.444 12 N -0.357 5.357 13 C 0.039 3.961 14 H 0.079 0.921 15 C -0.152 4.152 16 C -0.133 4.133 17 C -0.058 4.058 18 H 0.153 0.847 19 C 0.144 3.856 20 N -0.269 5.269 21 C 0.033 3.967 22 C -0.344 4.344 23 C 0.309 3.691 24 O -0.476 6.476 25 N -0.252 5.252 26 C -0.145 4.145 27 C -0.160 4.160 28 C -0.191 4.191 29 N 0.544 4.456 30 O -0.414 6.414 31 O -0.386 6.386 32 C -0.024 4.024 33 H 0.248 0.752 34 H 0.126 0.874 35 H -0.235 1.235 36 H -0.188 1.188 37 H 0.206 0.794 38 H 0.226 0.774 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.262 0.738 42 H 0.119 0.881 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.214 0.786 47 H 0.176 0.824 48 H 0.269 0.731 49 H 0.077 0.923 50 H 0.093 0.907 51 H 0.115 0.885 52 H 0.065 0.935 53 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.022 18.655 -0.408 18.769 hybrid contribution 0.924 -2.095 0.377 2.321 sum 2.946 16.560 -0.031 16.820 Atomic orbital electron populations 1.86532 1.17288 1.82224 1.50637 1.25495 0.85465 1.12145 0.96040 0.93808 0.77948 0.72431 0.85424 1.20451 1.02185 0.92626 0.99949 1.21731 0.89404 1.01196 0.89873 1.21829 1.06031 0.90390 1.02307 1.18963 0.89506 0.92074 0.84982 1.86476 1.63632 1.39840 1.30277 1.23173 0.98095 0.94667 0.89504 1.20502 0.78538 0.87641 0.84097 1.90863 1.55291 1.20295 1.77901 1.45672 1.51329 1.16816 1.21876 1.21031 0.96431 0.92840 0.85791 0.92146 1.21776 1.03806 0.97573 0.92048 1.21347 0.95775 0.98111 0.98102 1.20690 1.02035 0.95050 0.88071 0.84676 1.23783 0.78919 0.88734 0.94165 1.68393 1.32721 1.19732 1.06010 1.23172 0.95362 0.86121 0.92027 1.23004 0.94460 1.12078 1.04822 1.17655 0.89571 0.79284 0.82543 1.90987 1.21486 1.58393 1.76704 1.44627 1.11941 1.42734 1.25934 1.21493 1.02225 0.97689 0.93128 1.21826 0.98345 0.98827 0.96956 1.20875 1.13420 0.81584 1.03204 1.43915 0.98221 1.04009 0.99433 1.94507 1.36032 1.68421 1.42433 1.94674 1.56370 1.69285 1.18233 1.20825 0.94252 0.94830 0.92472 0.75189 0.87412 1.23528 1.18845 0.79403 0.77448 0.83942 0.83621 0.73765 0.88055 0.89738 0.89839 0.91136 0.78607 0.82414 0.73053 0.92347 0.90652 0.88510 0.93474 0.83455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.30 12.77 -148.98 -1.90 0.40 16 2 C -0.08 0.57 2.82 71.24 0.20 0.78 16 3 Si 0.80 -8.95 29.78 68.60 2.04 -6.90 16 4 C -0.15 1.01 5.39 -19.85 -0.11 0.90 16 5 C 0.00 0.06 8.66 22.26 0.19 0.26 16 6 C -0.19 2.39 9.04 22.37 0.20 2.60 16 7 C 0.19 -0.22 6.67 22.51 0.15 -0.07 16 8 O -0.29 -0.70 7.68 -63.39 -0.49 -1.19 16 9 C 0.02 -0.23 5.22 71.23 0.37 0.14 16 10 C 0.51 -1.23 7.87 87.66 0.69 -0.54 16 11 O -0.57 -6.79 16.16 15.98 0.26 -6.53 16 12 N -0.70 7.76 5.08 -442.54 -2.25 5.52 16 13 C 0.14 -1.17 2.46 44.99 0.11 -1.06 16 14 H 0.06 -0.02 7.58 -2.38 -0.02 -0.03 16 15 C -0.11 1.61 5.39 30.60 0.16 1.77 16 16 C -0.09 1.01 4.67 30.59 0.14 1.15 16 17 C -0.04 0.41 2.48 -11.54 -0.03 0.38 16 18 H 0.14 -2.27 8.14 -2.39 -0.02 -2.29 16 19 C 0.41 -1.74 6.73 138.18 0.93 -0.81 16 20 N -0.55 0.73 9.11 -187.55 -1.71 -0.98 16 21 C 0.17 -0.23 11.20 83.96 0.94 0.71 16 22 C -0.32 -1.02 10.07 22.48 0.23 -0.80 16 23 C 0.51 3.66 7.75 84.88 0.66 4.32 16 24 O -0.59 -9.82 17.97 -5.24 -0.09 -9.92 16 25 N -0.61 1.04 5.25 -310.68 -1.63 -0.59 16 26 C -0.11 0.80 5.18 30.58 0.16 0.96 16 27 C -0.12 0.95 5.49 30.58 0.17 1.12 16 28 C -0.11 -0.63 6.87 36.47 0.25 -0.38 16 29 N 0.03 0.55 4.45 -46.24 -0.21 0.35 16 30 O -0.21 -3.82 18.45 18.89 0.35 -3.47 16 31 O -0.17 -3.55 17.24 25.60 0.44 -3.11 16 32 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 33 H 0.40 -5.13 8.70 -74.06 -0.64 -5.77 16 34 H 0.11 -0.51 7.96 -2.39 -0.02 -0.53 16 35 H -0.31 0.35 7.11 99.48 0.71 1.06 16 36 H -0.26 2.46 7.11 99.48 0.71 3.17 16 37 H 0.19 -3.95 4.87 -2.91 -0.01 -3.97 16 38 H 0.21 -4.85 6.30 -2.91 -0.02 -4.87 16 39 H 0.14 -2.69 7.66 -2.39 -0.02 -2.71 16 40 H 0.15 -2.81 7.66 -2.39 -0.02 -2.83 16 41 H 0.42 -8.56 8.60 -92.71 -0.80 -9.36 16 42 H 0.10 -1.94 8.14 -2.39 -0.02 -1.96 16 43 H 0.08 -1.19 8.14 -2.39 -0.02 -1.21 16 44 H 0.08 -0.93 8.14 -2.39 -0.02 -0.95 16 45 H 0.07 -0.42 7.76 -2.39 -0.02 -0.44 16 46 H 0.20 -1.46 8.06 -2.91 -0.02 -1.48 16 47 H 0.16 0.33 8.06 -2.91 -0.02 0.31 16 48 H 0.43 -2.84 8.78 -92.71 -0.81 -3.66 16 49 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 50 H 0.07 -0.60 8.14 -2.39 -0.02 -0.62 16 51 H 0.10 -1.26 8.14 -2.39 -0.02 -1.28 16 52 H 0.05 -0.03 8.14 -2.38 -0.02 -0.05 16 53 H 0.15 0.53 7.61 -2.91 -0.02 0.51 16 Total: 0.00 -53.21 445.97 -0.75 -53.96 By element: Atomic # 1 Polarization: -37.95 SS G_CDS: -1.19 Total: -39.14 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 5.62 Total: 11.60 kcal Atomic # 7 Polarization: 10.09 SS G_CDS: -5.79 Total: 4.30 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -1.43 Total: -23.82 kcal Atomic # 14 Polarization: -8.95 SS G_CDS: 2.04 Total: -6.90 kcal Total: -53.21 -0.75 -53.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_4549638.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.066 kcal (2) G-P(sol) polarization free energy of solvation -53.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds