Wall clock time and date at job start Sat Mar 6 2021 19:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86299 * 109.47439 * 2 1 4 4 C 1.50700 * 109.47164 * 119.99960 * 2 1 3 5 5 C 1.38243 * 119.97403 * 244.99720 * 4 2 1 6 6 C 1.38286 * 120.11234 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.05825 * 359.96503 * 6 5 4 8 8 C 1.38751 * 119.94055 * 0.02562 * 7 6 5 9 9 O 1.35898 * 120.05634 * 180.02562 * 8 7 6 10 10 C 1.42902 * 116.99943 * 359.97438 * 9 8 7 11 11 C 1.50700 * 109.47407 * 180.02562 * 10 9 8 12 12 O 1.21287 * 119.99794 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99912 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99525 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47528 * 34.99951 * 14 13 11 16 16 C 1.53001 * 109.46770 * 155.00118 * 14 13 11 17 17 C 1.53001 * 109.46966 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47048 * 299.99577 * 17 16 14 19 19 H 1.08997 * 109.47218 * 300.00024 * 18 17 16 20 20 C 1.50700 * 109.46998 * 180.02562 * 18 17 16 21 21 N 1.30639 * 119.25520 * 334.97888 * 20 18 17 22 22 C 1.33520 * 121.50739 * 180.02562 * 21 20 18 23 23 C 1.36203 * 119.90771 * 359.97438 * 22 21 20 24 24 C 1.41016 * 118.59494 * 0.02562 * 23 22 21 25 25 O 1.21982 * 120.71234 * 180.02562 * 24 23 22 26 26 N 1.34745 * 119.25514 * 155.00546 * 20 18 17 27 27 C 1.53001 * 109.46892 * 60.00377 * 18 17 16 28 28 C 1.52995 * 109.47469 * 274.99923 * 14 13 11 29 29 C 1.38167 * 119.97203 * 65.25291 * 4 2 1 30 30 H 0.96704 * 113.99826 * 300.00406 * 1 2 3 31 31 H 1.09001 * 109.47307 * 239.99612 * 2 1 3 32 32 H 1.48501 * 110.00349 * 178.67934 * 3 2 1 33 33 H 1.48500 * 110.00085 * 300.00037 * 3 2 1 34 34 H 1.07998 * 119.94385 * 0.02562 * 5 4 2 35 35 H 1.08001 * 119.97266 * 179.97438 * 6 5 4 36 36 H 1.07995 * 120.02984 * 179.97438 * 7 6 5 37 37 H 1.09004 * 109.47097 * 60.00545 * 10 9 8 38 38 H 1.08996 * 109.47185 * 300.00701 * 10 9 8 39 39 H 0.96994 * 120.00222 * 359.97438 * 13 11 10 40 40 H 1.08997 * 109.47477 * 60.00113 * 16 14 13 41 41 H 1.08999 * 109.47155 * 299.99522 * 16 14 13 42 42 H 1.09007 * 109.47345 * 180.02562 * 17 16 14 43 43 H 1.08995 * 109.47730 * 60.00103 * 17 16 14 44 44 H 1.08000 * 120.04867 * 180.02562 * 22 21 20 45 45 H 1.08000 * 120.70268 * 179.97438 * 23 22 21 46 46 H 0.97003 * 120.03642 * 0.24732 * 26 20 18 47 47 H 1.08995 * 109.46812 * 60.00132 * 27 18 17 48 48 H 1.09003 * 109.46903 * 179.97438 * 27 18 17 49 49 H 1.09005 * 109.47352 * 300.00080 * 28 14 13 50 50 H 1.08995 * 109.47346 * 60.00012 * 28 14 13 51 51 H 1.08006 * 120.02681 * 0.02562 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6387 -0.0117 2.1909 6 6 3.1015 -0.6608 3.3209 7 6 2.8572 -2.0094 3.4929 8 6 2.1472 -2.7129 2.5305 9 8 1.9051 -4.0396 2.6976 10 6 2.4114 -4.6466 3.8881 11 6 2.0493 -6.1094 3.8993 12 8 1.4192 -6.5852 2.9787 13 7 2.4247 -6.8886 4.9329 14 6 2.0722 -8.3105 4.9441 15 1 2.1007 -8.6999 3.9264 16 6 3.0725 -9.0771 5.8117 17 6 2.7048 -10.5622 5.8228 18 6 1.2963 -10.7345 6.3951 19 1 1.2675 -10.3455 7.4128 20 6 0.9343 -12.1974 6.4066 21 7 1.5165 -13.0058 5.5615 22 6 1.2295 -14.3095 5.5322 23 6 0.3113 -14.8223 6.3977 24 6 -0.3172 -13.9499 7.3100 25 8 -1.1450 -14.3679 8.1024 26 7 0.0171 -12.6419 7.2880 27 6 0.2960 -9.9680 5.5275 28 6 0.6639 -8.4824 5.5166 29 6 1.6890 -2.0606 1.3952 30 1 -0.3933 0.4418 0.7651 31 1 1.7923 -0.5139 -0.8899 32 1 3.5346 1.7702 0.0322 33 1 1.5616 2.4679 -1.2085 34 1 2.8303 1.0429 2.0586 35 1 3.6543 -0.1129 4.0696 36 1 3.2191 -2.5160 4.3753 37 1 1.9753 -4.1573 4.7591 38 1 3.4958 -4.5408 3.9170 39 1 2.9283 -6.5080 5.6694 40 1 3.0440 -8.6878 6.8293 41 1 4.0758 -8.9547 5.4037 42 1 3.4171 -11.1083 6.4413 43 1 2.7336 -10.9514 4.8051 44 1 1.7254 -14.9566 4.8239 45 1 0.0691 -15.8747 6.3849 46 1 -0.4050 -12.0222 7.9035 47 1 0.3248 -10.3571 4.5098 48 1 -0.7075 -10.0911 5.9349 49 1 0.6353 -8.0930 6.5343 50 1 -0.0487 -7.9363 4.8986 51 1 1.1402 -2.6071 0.6424 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_4860298.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:59:37 Heat of formation + Delta-G solvation = -77.709441 kcal Electronic energy + Delta-G solvation = -34060.119986 eV Core-core repulsion = 29312.361815 eV Total energy + Delta-G solvation = -4747.758171 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.172 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.90808 -41.58983 -40.85717 -39.69209 -38.97862 -38.39652 -37.21731 -35.88255 -35.18455 -32.74278 -32.45233 -31.82663 -31.63649 -30.48847 -28.78009 -26.80970 -25.80269 -25.30795 -23.74233 -23.66281 -23.09834 -22.21657 -21.52861 -20.82349 -19.78219 -19.30654 -19.17791 -18.45471 -17.86723 -17.74327 -17.43165 -17.26233 -17.07381 -17.00085 -16.73429 -16.18258 -16.01260 -15.73124 -15.63094 -15.47723 -15.19264 -15.05545 -14.93171 -14.66678 -14.45079 -14.18396 -14.09280 -14.03721 -13.94669 -13.53633 -13.36373 -13.15507 -12.92298 -12.61155 -12.49960 -12.35785 -12.14205 -12.10765 -12.04307 -12.00530 -11.67444 -11.60706 -11.39673 -11.32693 -11.10185 -10.93069 -10.48578 -10.12772 -9.92805 -9.68029 -9.27072 -4.98733 -0.46693 0.21811 0.40227 0.66786 1.28546 1.47062 1.51265 1.56705 1.66363 1.98199 2.48942 2.60030 2.68518 2.78429 3.39654 3.50750 3.54302 3.61880 3.65181 3.69202 3.70746 3.86834 3.97532 4.02774 4.08903 4.14422 4.16364 4.17600 4.26232 4.28610 4.35032 4.35926 4.39834 4.48948 4.50106 4.51853 4.64371 4.66343 4.83259 4.87440 4.98763 5.00946 5.07301 5.16297 5.22409 5.25734 5.31123 5.34179 5.38225 5.39974 5.46126 5.46692 5.55444 5.71488 6.30083 6.51744 6.65739 6.69868 6.75193 7.17859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.087 4.087 3 Si 0.796 3.204 4 C -0.085 4.085 5 C -0.156 4.156 6 C -0.070 4.070 7 C -0.201 4.201 8 C 0.114 3.886 9 O -0.325 6.325 10 C 0.036 3.964 11 C 0.512 3.488 12 O -0.574 6.574 13 N -0.704 5.704 14 C 0.143 3.857 15 H 0.061 0.939 16 C -0.116 4.116 17 C -0.094 4.094 18 C -0.039 4.039 19 H 0.135 0.865 20 C 0.409 3.591 21 N -0.546 5.546 22 C 0.172 3.828 23 C -0.319 4.319 24 C 0.509 3.491 25 O -0.592 6.592 26 N -0.615 5.615 27 C -0.105 4.105 28 C -0.121 4.121 29 C -0.152 4.152 30 H 0.396 0.604 31 H 0.099 0.901 32 H -0.281 1.281 33 H -0.302 1.302 34 H 0.151 0.849 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.423 0.577 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.197 0.803 45 H 0.159 0.841 46 H 0.429 0.571 47 H 0.059 0.941 48 H 0.077 0.923 49 H 0.096 0.904 50 H 0.048 0.952 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.655 7.454 8.147 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.195 4.195 3 Si 0.700 3.300 4 C -0.086 4.086 5 C -0.173 4.173 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.069 3.931 9 O -0.238 6.238 10 C -0.041 4.041 11 C 0.298 3.702 12 O -0.452 6.452 13 N -0.357 5.357 14 C 0.038 3.962 15 H 0.080 0.920 16 C -0.153 4.153 17 C -0.132 4.132 18 C -0.059 4.059 19 H 0.153 0.847 20 C 0.144 3.856 21 N -0.269 5.269 22 C 0.033 3.967 23 C -0.343 4.343 24 C 0.310 3.690 25 O -0.475 6.475 26 N -0.252 5.252 27 C -0.144 4.144 28 C -0.159 4.159 29 C -0.171 4.171 30 H 0.246 0.754 31 H 0.116 0.884 32 H -0.207 1.207 33 H -0.230 1.230 34 H 0.168 0.832 35 H 0.182 0.818 36 H 0.180 0.820 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.261 0.739 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.214 0.786 45 H 0.176 0.824 46 H 0.270 0.730 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.114 0.886 50 H 0.067 0.933 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.784 6.956 6.223 12.153 hybrid contribution -0.929 -1.242 0.377 1.597 sum 6.854 5.713 6.600 11.099 Atomic orbital electron populations 1.86483 1.17397 1.82317 1.50447 1.25431 0.85302 1.11893 0.96901 0.93569 0.77730 0.74063 0.84593 1.20199 0.98293 0.93043 0.97059 1.21213 1.00664 1.00584 0.94887 1.21358 0.96715 0.93563 0.97131 1.21644 1.03420 0.96361 1.00539 1.19193 0.96260 0.82383 0.95293 1.86127 1.74619 1.20829 1.42232 1.22767 1.02515 0.90330 0.88531 1.20548 0.78923 0.88571 0.82200 1.90777 1.40956 1.75850 1.37660 1.45725 1.57419 1.09676 1.22922 1.21066 0.94988 0.79721 1.00395 0.92031 1.21784 0.98399 0.93980 1.01172 1.21342 0.93159 0.95879 1.02866 1.20686 0.97988 0.83266 1.03968 0.84727 1.23747 0.81832 0.97925 0.82052 1.68387 1.29450 1.05075 1.23967 1.23172 0.89566 0.90778 0.93188 1.23005 1.05822 1.02983 1.02495 1.17654 0.83472 0.82310 0.85608 1.90990 1.37009 1.76229 1.43305 1.44627 1.35763 1.11654 1.33182 1.21506 0.98296 0.94663 0.99962 1.21842 0.96063 0.95301 1.02738 1.20301 1.04461 0.94656 0.97691 0.75444 0.88371 1.20731 1.23041 0.83177 0.81796 0.81998 0.85544 0.85822 0.73923 0.88166 0.89924 0.89839 0.91030 0.78594 0.82378 0.73041 0.92219 0.90460 0.88580 0.93344 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.69 12.84 -148.98 -1.91 -3.61 16 2 C -0.09 -0.14 2.80 71.24 0.20 0.06 16 3 Si 0.80 -1.89 29.80 68.60 2.04 0.15 16 4 C -0.09 -0.15 5.35 -19.88 -0.11 -0.26 16 5 C -0.16 0.50 8.67 22.28 0.19 0.69 16 6 C -0.07 0.39 10.04 22.25 0.22 0.62 16 7 C -0.20 0.80 9.04 22.37 0.20 1.01 16 8 C 0.11 0.39 6.69 22.51 0.15 0.54 16 9 O -0.32 -1.95 9.67 -73.36 -0.71 -2.66 16 10 C 0.04 -0.17 5.22 71.24 0.37 0.20 16 11 C 0.51 0.26 7.87 87.66 0.69 0.95 16 12 O -0.57 -7.52 16.16 15.99 0.26 -7.27 16 13 N -0.70 5.77 5.08 -442.54 -2.25 3.52 16 14 C 0.14 -0.94 2.45 44.99 0.11 -0.83 16 15 H 0.06 0.04 7.58 -2.39 -0.02 0.03 16 16 C -0.12 1.44 5.39 30.59 0.16 1.60 16 17 C -0.09 0.92 4.67 30.60 0.14 1.06 16 18 C -0.04 0.39 2.48 -11.54 -0.03 0.36 16 19 H 0.14 -2.16 8.14 -2.39 -0.02 -2.18 16 20 C 0.41 -1.64 6.73 138.18 0.93 -0.71 16 21 N -0.55 0.64 9.11 -187.56 -1.71 -1.07 16 22 C 0.17 -0.22 11.20 83.96 0.94 0.72 16 23 C -0.32 -1.03 10.07 22.48 0.23 -0.80 16 24 C 0.51 3.69 7.75 84.88 0.66 4.35 16 25 O -0.59 -9.84 17.97 -5.26 -0.09 -9.93 16 26 N -0.61 0.94 5.25 -310.69 -1.63 -0.69 16 27 C -0.11 0.76 5.19 30.61 0.16 0.92 16 28 C -0.12 0.84 5.50 30.61 0.17 1.01 16 29 C -0.15 -0.96 9.63 22.37 0.22 -0.74 16 30 H 0.40 -2.30 8.70 -74.05 -0.64 -2.94 16 31 H 0.10 0.40 7.96 -2.39 -0.02 0.38 16 32 H -0.28 -0.42 7.11 99.48 0.71 0.29 16 33 H -0.30 -1.66 7.11 99.48 0.71 -0.95 16 34 H 0.15 -1.22 4.90 -2.91 -0.01 -1.24 16 35 H 0.16 -1.98 8.06 -2.91 -0.02 -2.01 16 36 H 0.16 -1.84 6.30 -2.91 -0.02 -1.86 16 37 H 0.13 -1.46 7.66 -2.38 -0.02 -1.48 16 38 H 0.12 -1.37 7.66 -2.39 -0.02 -1.39 16 39 H 0.42 -6.96 8.60 -92.71 -0.80 -7.76 16 40 H 0.10 -1.73 8.14 -2.39 -0.02 -1.75 16 41 H 0.08 -1.01 8.14 -2.39 -0.02 -1.03 16 42 H 0.08 -0.86 8.14 -2.38 -0.02 -0.87 16 43 H 0.07 -0.39 7.76 -2.39 -0.02 -0.40 16 44 H 0.20 -1.45 8.06 -2.91 -0.02 -1.48 16 45 H 0.16 0.33 8.06 -2.91 -0.02 0.30 16 46 H 0.43 -2.75 8.78 -92.71 -0.81 -3.57 16 47 H 0.06 -0.16 8.14 -2.39 -0.02 -0.17 16 48 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 49 H 0.10 -1.14 8.14 -2.38 -0.02 -1.16 16 50 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 51 H 0.11 1.11 8.06 -2.91 -0.02 1.08 16 Total: 0.00 -40.03 420.09 -1.61 -41.63 By element: Atomic # 1 Polarization: -29.61 SS G_CDS: -1.22 Total: -30.83 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 5.61 Total: 10.75 kcal Atomic # 7 Polarization: 7.35 SS G_CDS: -5.59 Total: 1.76 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -2.46 Total: -23.46 kcal Atomic # 14 Polarization: -1.89 SS G_CDS: 2.04 Total: 0.15 kcal Total: -40.03 -1.61 -41.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_4860298.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.077 kcal (2) G-P(sol) polarization free energy of solvation -40.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds