Wall clock time and date at job start Sat Mar 6 2021 19:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35890 * 117.00078 * 2 1 4 4 C 1.38617 * 120.03124 * 180.27564 * 3 2 1 5 5 C 1.38647 * 119.89244 * 180.25018 * 4 3 2 6 6 O 1.35902 * 120.02749 * 179.74802 * 5 4 3 7 7 C 1.42901 * 116.99954 * 359.72651 * 6 5 4 8 8 C 1.50696 * 109.47280 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99909 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00051 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99775 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47565 * 34.99894 * 11 10 8 13 13 C 1.52997 * 109.46953 * 154.99854 * 11 10 8 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46626 * 299.99539 * 14 13 11 16 16 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 17 17 C 1.50706 * 109.46957 * 180.02562 * 15 14 13 18 18 N 1.30637 * 119.24968 * 335.00073 * 17 15 14 19 19 C 1.33531 * 121.50593 * 179.97438 * 18 17 15 20 20 C 1.36203 * 119.90453 * 0.02562 * 19 18 17 21 21 C 1.41026 * 118.59625 * 0.02562 * 20 19 18 22 22 O 1.21978 * 120.70932 * 180.02562 * 21 20 19 23 23 N 1.34746 * 119.25621 * 154.73028 * 17 15 14 24 24 C 1.52997 * 109.46991 * 60.00378 * 15 14 13 25 25 C 1.52996 * 109.47131 * 299.99311 * 24 15 14 26 26 C 1.38748 * 119.94585 * 359.47316 * 5 4 3 27 27 C 1.50703 * 119.97435 * 180.27440 * 26 5 4 28 28 O 1.42904 * 109.47034 * 74.99887 * 27 26 5 29 29 Si 1.86302 * 109.47274 * 194.99934 * 27 26 5 30 30 C 1.38195 * 120.05631 * 0.25066 * 26 5 4 31 31 C 1.38153 * 120.11092 * 0.02562 * 30 26 5 32 32 H 1.09001 * 109.47415 * 60.00172 * 1 2 3 33 33 H 1.09004 * 109.47122 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47636 * 299.99991 * 1 2 3 35 35 H 1.08005 * 120.04706 * 359.97438 * 4 3 2 36 36 H 1.08994 * 109.47209 * 59.99696 * 7 6 5 37 37 H 1.09005 * 109.46598 * 300.00195 * 7 6 5 38 38 H 0.97001 * 119.99650 * 359.97438 * 10 8 7 39 39 H 1.09001 * 109.47502 * 60.00124 * 13 11 10 40 40 H 1.09001 * 109.47289 * 299.99920 * 13 11 10 41 41 H 1.08993 * 109.46955 * 60.00011 * 14 13 11 42 42 H 1.09000 * 109.47050 * 179.97438 * 14 13 11 43 43 H 1.07989 * 120.05046 * 180.02562 * 19 18 17 44 44 H 1.07995 * 120.70335 * 180.02562 * 20 19 18 45 45 H 0.97003 * 120.04041 * 0.02824 * 23 17 15 46 46 H 1.09001 * 109.47289 * 179.97438 * 24 15 14 47 47 H 1.09000 * 109.47611 * 59.99933 * 24 15 14 48 48 H 1.08996 * 109.47452 * 300.00000 * 25 24 15 49 49 H 1.09000 * 109.47054 * 180.02562 * 25 24 15 50 50 H 1.08999 * 109.46943 * 315.00260 * 27 26 5 51 51 H 0.96699 * 113.99659 * 60.00280 * 28 27 26 52 52 H 1.48494 * 110.00038 * 58.67985 * 29 27 26 53 53 H 1.48498 * 109.99750 * 180.02562 * 29 27 26 54 54 H 1.07999 * 119.94728 * 180.02562 * 30 26 5 55 55 H 1.07997 * 119.98029 * 179.97438 * 31 30 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4302 1.2841 -0.0058 5 6 4.0567 2.5209 -0.0005 6 8 5.4136 2.5959 -0.0010 7 6 6.1316 1.3604 -0.0010 8 6 7.6124 1.6400 -0.0009 9 8 8.0135 2.7846 -0.0013 10 7 8.4912 0.6181 -0.0014 11 6 9.9307 0.8899 -0.0018 12 1 10.1318 1.7844 0.5876 13 6 10.6746 -0.3002 0.6074 14 6 12.1782 -0.0166 0.6063 15 6 12.6549 0.2013 -0.8311 16 1 12.4536 -0.6933 -1.4203 17 6 14.1360 0.4800 -0.8323 18 7 14.6920 0.9812 0.2383 19 6 16.0001 1.2452 0.2868 20 6 16.7847 0.9917 -0.7973 21 6 16.1843 0.4516 -1.9535 22 8 16.8506 0.2093 -2.9461 23 7 14.8576 0.2015 -1.9357 24 6 11.9110 1.3914 -1.4403 25 6 10.4076 1.1078 -1.4392 26 6 3.2971 3.6820 -0.0005 27 6 3.9774 5.0268 -0.0011 28 8 4.5032 5.2941 -1.3027 29 14 2.7440 6.3469 0.4536 30 6 1.9172 3.6065 -0.0006 31 6 1.2905 2.3753 0.0000 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 4.0196 0.3791 -0.0099 36 1 5.8696 0.7879 -0.8906 37 1 5.8702 0.7883 0.8893 38 1 8.1704 -0.2974 -0.0014 39 1 10.4736 -1.1948 0.0179 40 1 10.3346 -0.4558 1.6312 41 1 12.3795 0.8780 1.1955 42 1 12.7081 -0.8642 1.0407 43 1 16.4353 1.6590 1.1843 44 1 17.8441 1.1998 -0.7721 45 1 14.4236 -0.1737 -2.7178 46 1 12.2510 1.5469 -2.4642 47 1 12.1125 2.2860 -0.8512 48 1 10.2061 0.2132 -2.0284 49 1 9.8776 1.9554 -1.8737 50 1 4.7901 5.0231 0.7253 51 1 3.8344 5.3124 -2.0009 52 1 2.1663 6.0631 1.7918 53 1 3.4025 7.6779 0.4560 54 1 1.3277 4.5114 -0.0010 55 1 0.2120 2.3187 0.0003 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_4974312.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:59:45 Heat of formation + Delta-G solvation = -112.301513 kcal Electronic energy + Delta-G solvation = -39203.083096 eV Core-core repulsion = 33979.605090 eV Total energy + Delta-G solvation = -5223.478007 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.187 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.91558 -41.83565 -41.09678 -40.07057 -39.50212 -38.57692 -38.17135 -36.90719 -35.89179 -35.19550 -32.73729 -32.26386 -31.83452 -31.45750 -30.52820 -28.92370 -28.31248 -26.10462 -25.84650 -25.35392 -23.80612 -23.72024 -22.65895 -22.46423 -21.58938 -20.86085 -19.92177 -19.78879 -19.19233 -18.57639 -18.04856 -17.83231 -17.81440 -17.52118 -17.28350 -17.06997 -16.92001 -16.65641 -16.49482 -16.10540 -15.96113 -15.71110 -15.62603 -15.45551 -15.21249 -15.12176 -15.02437 -14.58467 -14.45973 -14.45318 -14.09136 -14.02745 -13.85443 -13.52749 -13.41451 -13.30043 -13.18243 -13.14049 -12.53428 -12.47215 -12.36198 -12.26604 -12.14119 -12.05386 -11.99837 -11.86020 -11.62417 -11.61063 -11.40691 -11.34441 -11.11059 -10.95330 -10.35047 -10.14576 -9.68700 -9.68592 -9.08771 -5.03590 -0.47448 0.21987 0.31567 0.66072 1.32069 1.44663 1.45920 1.55092 1.64695 1.98767 2.26514 2.48169 2.57327 2.59507 2.77220 3.38600 3.51171 3.60582 3.61456 3.63918 3.69248 3.75074 3.84704 3.95109 3.96163 4.03394 4.09574 4.14773 4.15690 4.18238 4.27479 4.33499 4.36051 4.38095 4.41094 4.44998 4.47986 4.48382 4.50187 4.62169 4.64165 4.81241 4.81513 4.86728 4.99245 5.03279 5.05741 5.14600 5.20559 5.24922 5.28884 5.29653 5.33453 5.38132 5.45561 5.48950 5.54359 6.14563 6.37794 6.48060 6.65000 6.69126 6.86778 7.15206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.163 3.837 4 C -0.253 4.253 5 C 0.174 3.826 6 O -0.305 6.305 7 C 0.033 3.967 8 C 0.513 3.487 9 O -0.569 6.569 10 N -0.705 5.705 11 C 0.143 3.857 12 H 0.062 0.938 13 C -0.116 4.116 14 C -0.093 4.093 15 C -0.039 4.039 16 H 0.135 0.865 17 C 0.409 3.591 18 N -0.546 5.546 19 C 0.172 3.828 20 C -0.318 4.318 21 C 0.509 3.491 22 O -0.592 6.592 23 N -0.615 5.615 24 C -0.104 4.104 25 C -0.121 4.121 26 C -0.204 4.204 27 C -0.067 4.067 28 O -0.557 6.557 29 Si 0.792 3.208 30 C -0.032 4.032 31 C -0.238 4.238 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.153 0.847 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.421 0.579 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.198 0.802 44 H 0.159 0.841 45 H 0.429 0.571 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.047 0.953 50 H 0.081 0.919 51 H 0.391 0.609 52 H -0.280 1.280 53 H -0.304 1.304 54 H 0.166 0.834 55 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.001 -7.595 1.436 13.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.117 3.883 4 C -0.272 4.272 5 C 0.128 3.872 6 O -0.218 6.218 7 C -0.045 4.045 8 C 0.299 3.701 9 O -0.446 6.446 10 N -0.359 5.359 11 C 0.039 3.961 12 H 0.080 0.920 13 C -0.154 4.154 14 C -0.132 4.132 15 C -0.059 4.059 16 H 0.152 0.848 17 C 0.145 3.855 18 N -0.269 5.269 19 C 0.033 3.967 20 C -0.343 4.343 21 C 0.310 3.690 22 O -0.475 6.475 23 N -0.252 5.252 24 C -0.144 4.144 25 C -0.160 4.160 26 C -0.205 4.205 27 C -0.175 4.175 28 O -0.365 6.365 29 Si 0.697 3.303 30 C -0.049 4.049 31 C -0.257 4.257 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.171 0.829 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.259 0.741 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.214 0.786 44 H 0.177 0.823 45 H 0.270 0.730 46 H 0.096 0.904 47 H 0.078 0.922 48 H 0.113 0.887 49 H 0.066 0.934 50 H 0.098 0.902 51 H 0.240 0.760 52 H -0.207 1.207 53 H -0.233 1.233 54 H 0.183 0.817 55 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.937 -6.063 2.576 11.922 hybrid contribution 1.127 -0.803 -0.813 1.605 sum -8.809 -6.866 1.762 11.307 Atomic orbital electron populations 1.23410 0.75961 1.05708 1.02763 1.86051 1.23794 1.26588 1.87935 1.18885 0.91637 0.85052 0.92718 1.20545 0.93479 0.97349 1.15847 1.18616 0.81754 0.93270 0.93607 1.86226 1.15576 1.31811 1.88145 1.22767 0.88749 0.86437 1.06530 1.20438 0.88448 0.85339 0.75854 1.90785 1.80694 1.23335 1.49834 1.45738 1.05966 1.09466 1.74698 1.21071 0.78601 0.99708 0.96714 0.91971 1.21789 0.93913 0.97079 1.02595 1.21335 0.94650 1.03832 0.93366 1.20678 0.82590 1.01324 1.01316 0.84757 1.23722 0.95847 0.85117 0.80853 1.68391 1.13305 1.21039 1.24139 1.23177 0.87783 0.87550 0.98208 1.23008 1.04238 1.12744 0.94266 1.17657 0.81390 0.79977 0.90006 1.90988 1.62385 1.56968 1.37176 1.44630 1.10267 1.52736 1.17599 1.21491 0.94573 0.96813 1.01490 1.21832 0.94495 1.02887 0.96745 1.19740 0.93832 0.94030 1.12895 1.25106 1.04302 0.99659 0.88465 1.86542 1.39264 1.93723 1.16953 0.94143 0.80411 0.73130 0.82597 1.20856 0.91539 0.98605 0.93914 1.21448 1.01780 0.91192 1.11252 0.91059 0.86614 0.91363 0.82939 0.86061 0.86218 0.74065 0.88237 0.89951 0.90990 0.89787 0.78567 0.82333 0.73049 0.90421 0.92183 0.88680 0.93402 0.90177 0.76029 1.20686 1.23294 0.81742 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.12 9.81 113.37 1.11 0.99 16 2 O -0.33 0.11 10.49 -92.31 -0.97 -0.86 16 3 C 0.16 0.10 6.68 22.50 0.15 0.25 16 4 C -0.25 -0.35 8.97 22.46 0.20 -0.15 16 5 C 0.17 0.89 6.66 22.49 0.15 1.04 16 6 O -0.31 -2.47 8.99 -73.41 -0.66 -3.13 16 7 C 0.03 -0.04 5.22 71.23 0.37 0.33 16 8 C 0.51 1.56 7.87 87.66 0.69 2.25 16 9 O -0.57 -8.64 16.16 16.01 0.26 -8.38 16 10 N -0.70 4.09 5.08 -442.54 -2.25 1.84 16 11 C 0.14 -0.69 2.45 44.99 0.11 -0.58 16 12 H 0.06 0.14 7.58 -2.39 -0.02 0.12 16 13 C -0.12 1.26 5.39 30.60 0.16 1.43 16 14 C -0.09 0.80 4.67 30.60 0.14 0.94 16 15 C -0.04 0.35 2.48 -11.54 -0.03 0.32 16 16 H 0.13 -2.00 8.14 -2.39 -0.02 -2.02 16 17 C 0.41 -1.30 6.73 138.18 0.93 -0.37 16 18 N -0.55 0.23 9.11 -187.55 -1.71 -1.48 16 19 C 0.17 -0.11 11.20 83.96 0.94 0.83 16 20 C -0.32 -1.20 10.07 22.48 0.23 -0.97 16 21 C 0.51 4.00 7.75 84.89 0.66 4.66 16 22 O -0.59 -10.17 17.97 -5.24 -0.09 -10.26 16 23 N -0.61 0.47 5.25 -310.68 -1.63 -1.16 16 24 C -0.10 0.62 5.19 30.59 0.16 0.78 16 25 C -0.12 0.64 5.49 30.59 0.17 0.80 16 26 C -0.20 -0.77 5.27 -19.75 -0.10 -0.87 16 27 C -0.07 -0.39 2.37 71.24 0.17 -0.22 16 28 O -0.56 -4.10 12.88 -148.98 -1.92 -6.02 16 29 Si 0.79 0.38 29.91 68.60 2.05 2.44 16 30 C -0.03 0.06 8.65 22.24 0.19 0.25 16 31 C -0.24 0.58 9.04 22.39 0.20 0.79 16 32 H 0.07 -0.69 7.66 -2.39 -0.02 -0.71 16 33 H 0.12 -1.20 8.14 -2.39 -0.02 -1.22 16 34 H 0.07 -0.63 7.66 -2.39 -0.02 -0.65 16 35 H 0.15 -0.48 6.30 -2.91 -0.02 -0.50 16 36 H 0.12 -0.85 7.65 -2.39 -0.02 -0.87 16 37 H 0.12 -0.83 7.67 -2.38 -0.02 -0.85 16 38 H 0.42 -5.77 8.60 -92.71 -0.80 -6.56 16 39 H 0.10 -1.55 8.14 -2.39 -0.02 -1.57 16 40 H 0.08 -0.87 8.14 -2.39 -0.02 -0.89 16 41 H 0.07 -0.31 7.76 -2.39 -0.02 -0.33 16 42 H 0.08 -0.77 8.14 -2.39 -0.02 -0.79 16 43 H 0.20 -1.35 8.06 -2.92 -0.02 -1.37 16 44 H 0.16 0.40 8.06 -2.91 -0.02 0.38 16 45 H 0.43 -2.41 8.78 -92.71 -0.81 -3.22 16 46 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 47 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 49 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 50 H 0.08 0.93 7.82 -2.39 -0.02 0.91 16 51 H 0.39 -1.03 8.70 -74.06 -0.64 -1.67 16 52 H -0.28 -1.18 7.11 99.48 0.71 -0.47 16 53 H -0.30 -2.65 7.11 99.48 0.71 -1.95 16 54 H 0.17 -1.36 5.12 -2.91 -0.01 -1.37 16 55 H 0.16 -1.29 6.29 -2.91 -0.02 -1.30 16 Total: 0.00 -41.42 449.03 -1.56 -42.97 By element: Atomic # 1 Polarization: -27.23 SS G_CDS: -1.24 Total: -28.48 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 6.61 Total: 12.51 kcal Atomic # 7 Polarization: 4.79 SS G_CDS: -5.59 Total: -0.79 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -3.38 Total: -28.65 kcal Atomic # 14 Polarization: 0.38 SS G_CDS: 2.05 Total: 2.44 kcal Total: -41.42 -1.56 -42.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_4974312.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.328 kcal (2) G-P(sol) polarization free energy of solvation -41.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds