Wall clock time and date at job start Sat Mar 6 2021 20:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86304 * 109.47370 * 2 1 4 4 C 1.50698 * 109.47123 * 120.00300 * 2 1 3 5 5 C 1.35456 * 125.56461 * 245.01877 * 4 2 1 6 6 C 1.39836 * 107.86343 * 179.71798 * 5 4 2 7 7 C 1.37867 * 107.08895 * 0.42223 * 6 5 4 8 8 C 1.46674 * 126.23629 * 179.84495 * 7 6 5 9 9 O 1.21693 * 120.00152 * 359.68726 * 8 7 6 10 10 N 1.34778 * 119.99873 * 179.69280 * 8 7 6 11 11 C 1.46507 * 119.99832 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47132 * 325.00740 * 11 10 8 13 13 C 1.53004 * 109.46622 * 84.99880 * 11 10 8 14 14 C 1.53005 * 109.46760 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46909 * 299.99546 * 14 13 11 16 16 H 1.08997 * 109.47344 * 300.00758 * 15 14 13 17 17 C 1.50700 * 109.47408 * 180.02562 * 15 14 13 18 18 N 1.30639 * 119.25571 * 265.03008 * 17 15 14 19 19 C 1.33515 * 121.50561 * 179.97438 * 18 17 15 20 20 C 1.36204 * 119.91119 * 359.70696 * 19 18 17 21 21 C 1.41020 * 118.59033 * 0.55464 * 20 19 18 22 22 O 1.21983 * 120.71127 * 179.72410 * 21 20 19 23 23 N 1.34743 * 119.25231 * 84.99886 * 17 15 14 24 24 C 1.53002 * 109.46932 * 60.00249 * 15 14 13 25 25 C 1.52991 * 109.47321 * 204.99550 * 11 10 8 26 26 N 1.35537 * 125.56763 * 64.99993 * 4 2 1 27 27 H 0.96697 * 113.99683 * 300.00215 * 1 2 3 28 28 H 1.09003 * 109.47435 * 240.00212 * 2 1 3 29 29 H 1.48497 * 109.99888 * 300.00196 * 3 2 1 30 30 H 1.48502 * 109.99645 * 61.32428 * 3 2 1 31 31 H 1.08002 * 126.06417 * 359.97438 * 5 4 2 32 32 H 1.08000 * 126.45602 * 180.26803 * 6 5 4 33 33 H 0.96995 * 120.00438 * 359.97438 * 10 8 7 34 34 H 1.09004 * 109.47284 * 299.99883 * 13 11 10 35 35 H 1.08995 * 109.47400 * 60.00461 * 13 11 10 36 36 H 1.09005 * 109.47070 * 180.02562 * 14 13 11 37 37 H 1.08990 * 109.47385 * 60.00224 * 14 13 11 38 38 H 1.08005 * 120.04456 * 180.02562 * 19 18 17 39 39 H 1.07997 * 120.70573 * 180.30814 * 20 19 18 40 40 H 0.97006 * 120.04088 * 0.05344 * 23 17 15 41 41 H 1.09002 * 109.47101 * 59.99898 * 24 15 14 42 42 H 1.09004 * 109.47177 * 179.97438 * 24 15 14 43 43 H 1.09009 * 109.46931 * 60.00323 * 25 11 10 44 44 H 1.09003 * 109.47684 * 300.00908 * 25 11 10 45 45 H 0.97003 * 125.67169 * 0.03863 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.6327 -0.1394 2.2388 6 6 2.9018 -1.1297 3.1886 7 6 2.3530 -2.3032 2.7171 8 6 2.3936 -3.6088 3.3842 9 8 2.9569 -3.7270 4.4564 10 7 1.8072 -4.6777 2.8096 11 6 1.8482 -5.9819 3.4757 12 1 2.7986 -6.0936 3.9975 13 6 0.6997 -6.0769 4.4821 14 6 0.7429 -7.4387 5.1782 15 6 0.6003 -8.5492 4.1354 16 1 -0.3501 -8.4378 3.6135 17 6 0.6423 -9.8906 4.8209 18 7 1.7776 -10.5320 4.8999 19 6 1.8663 -11.7226 5.4975 20 6 0.7571 -12.2910 6.0470 21 6 -0.4697 -11.6014 5.9568 22 8 -1.4880 -12.0770 6.4310 23 7 -0.4920 -10.4009 5.3392 24 6 1.7488 -8.4542 3.1289 25 6 1.7054 -7.0920 2.4326 26 7 1.7548 -2.0251 1.5089 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5138 -0.8900 29 1 1.5615 2.4679 -1.2084 30 1 1.5880 2.4585 1.2243 31 1 2.9276 0.8978 2.3003 32 1 3.4405 -1.0002 4.1157 33 1 1.3579 -4.5835 1.9551 34 1 0.8014 -5.2860 5.2253 35 1 -0.2508 -5.9652 3.9604 36 1 -0.0756 -7.5066 5.8949 37 1 1.6933 -7.5501 5.7000 38 1 2.8172 -12.2321 5.5497 39 1 0.8152 -13.2513 6.5378 40 1 -1.3236 -9.9066 5.2683 41 1 2.6994 -8.5655 3.6507 42 1 1.6476 -9.2456 2.3863 43 1 2.5236 -7.0243 1.7156 44 1 0.7549 -6.9802 1.9108 45 1 1.2853 -2.6637 0.9498 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_6580494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:00:07 Heat of formation + Delta-G solvation = -28.504024 kcal Electronic energy + Delta-G solvation = -29303.148908 eV Core-core repulsion = 25094.544484 eV Total energy + Delta-G solvation = -4208.604423 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.91270 -42.50470 -40.79601 -39.51384 -38.47379 -37.79452 -35.91374 -35.21515 -32.81014 -32.08539 -31.81694 -31.40604 -30.04529 -26.98652 -25.77698 -25.32118 -23.77704 -23.51111 -22.34132 -21.44195 -21.35144 -20.83046 -19.83382 -19.70575 -19.13167 -18.16406 -17.82188 -17.35294 -17.08502 -16.66155 -16.47372 -16.06954 -15.92714 -15.63913 -15.42699 -15.21177 -15.13657 -15.12146 -14.50508 -14.42285 -14.35834 -14.08698 -14.03507 -13.93770 -13.61067 -13.44101 -13.18334 -12.56063 -12.37816 -12.31770 -12.15077 -12.05273 -11.88442 -11.63134 -11.43531 -11.38154 -11.21491 -11.09627 -10.80747 -10.21736 -10.04996 -9.67917 -9.26328 -4.81877 -0.46647 0.32778 0.66763 1.24274 1.54553 1.56846 1.70677 1.90962 2.02591 2.24429 2.30919 2.49125 2.76641 3.37539 3.40055 3.55294 3.60858 3.63259 3.69624 3.83979 3.95627 4.13697 4.15418 4.27278 4.28060 4.32926 4.34200 4.38566 4.48388 4.49686 4.53856 4.62417 4.80428 4.87435 4.97929 4.99075 5.04901 5.12067 5.15215 5.19901 5.28110 5.34089 5.36295 5.45583 5.51963 5.61734 5.81126 6.31794 6.42010 6.50658 6.65493 6.69791 7.09040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.060 4.060 3 Si 0.790 3.210 4 C 0.032 3.968 5 C -0.207 4.207 6 C -0.121 4.121 7 C -0.061 4.061 8 C 0.589 3.411 9 O -0.569 6.569 10 N -0.712 5.712 11 C 0.143 3.857 12 H 0.070 0.930 13 C -0.121 4.121 14 C -0.104 4.104 15 C -0.040 4.040 16 H 0.132 0.868 17 C 0.409 3.591 18 N -0.544 5.544 19 C 0.173 3.827 20 C -0.319 4.319 21 C 0.509 3.491 22 O -0.593 6.593 23 N -0.615 5.615 24 C -0.092 4.092 25 C -0.117 4.117 26 N -0.510 5.510 27 H 0.389 0.611 28 H 0.136 0.864 29 H -0.299 1.299 30 H -0.284 1.284 31 H 0.163 0.837 32 H 0.143 0.857 33 H 0.410 0.590 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.198 0.802 39 H 0.159 0.841 40 H 0.428 0.572 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.931 3.414 -7.717 8.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.169 4.169 3 Si 0.694 3.306 4 C -0.087 4.087 5 C -0.231 4.231 6 C -0.148 4.148 7 C -0.175 4.175 8 C 0.377 3.623 9 O -0.448 6.448 10 N -0.363 5.363 11 C 0.039 3.961 12 H 0.088 0.912 13 C -0.159 4.159 14 C -0.143 4.143 15 C -0.060 4.060 16 H 0.149 0.851 17 C 0.145 3.855 18 N -0.267 5.267 19 C 0.034 3.966 20 C -0.343 4.343 21 C 0.310 3.690 22 O -0.476 6.476 23 N -0.252 5.252 24 C -0.131 4.131 25 C -0.155 4.155 26 N -0.107 5.107 27 H 0.239 0.761 28 H 0.154 0.846 29 H -0.227 1.227 30 H -0.210 1.210 31 H 0.181 0.819 32 H 0.161 0.839 33 H 0.246 0.754 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.215 0.785 39 H 0.176 0.824 40 H 0.269 0.731 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.112 0.888 45 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 2.380 3.420 -7.516 8.594 hybrid contribution -2.497 -0.791 0.808 2.741 sum -0.117 2.629 -6.708 7.205 Atomic orbital electron populations 1.86578 1.18090 1.80478 1.50452 1.25004 0.83582 1.11913 0.96410 0.93312 0.90314 0.70471 0.76522 1.21215 1.03824 0.84284 0.99374 1.20933 1.06266 1.00819 0.95064 1.21474 1.01630 0.91150 1.00536 1.20338 1.10614 0.95454 0.91085 1.17211 0.77957 0.83000 0.84106 1.90855 1.46119 1.84994 1.22880 1.45828 1.56869 1.08631 1.24959 1.21104 0.99363 0.81493 0.94135 0.91184 1.21830 0.99475 0.96301 0.98323 1.21492 1.03342 0.92505 0.96941 1.20673 1.04069 0.84972 0.96267 0.85074 1.23706 0.80846 0.94862 0.86110 1.68387 1.22787 1.11003 1.24517 1.23183 0.99663 0.88597 0.85187 1.23005 0.92227 1.06043 1.13014 1.17667 0.91182 0.81133 0.79063 1.90990 1.37556 1.68067 1.51018 1.44633 1.13874 1.19700 1.47039 1.21333 0.97784 0.96834 0.97109 1.21800 1.04590 0.92153 0.96982 1.41874 1.42494 1.09512 1.16867 0.76076 0.84599 1.22703 1.21021 0.81920 0.83894 0.75403 0.93030 0.89300 0.90447 0.91721 0.78484 0.82368 0.73104 0.90624 0.89906 0.89988 0.88767 0.73116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.00 12.88 -148.98 -1.92 0.08 16 2 C -0.06 0.39 3.08 71.24 0.22 0.60 16 3 Si 0.79 -4.68 30.56 68.60 2.10 -2.58 16 4 C 0.03 -0.13 6.47 41.34 0.27 0.13 16 5 C -0.21 0.35 9.32 22.01 0.21 0.56 16 6 C -0.12 -0.31 10.65 22.57 0.24 -0.07 16 7 C -0.06 -0.05 7.06 40.35 0.28 0.23 16 8 C 0.59 1.74 7.75 86.45 0.67 2.41 16 9 O -0.57 -6.81 16.55 -4.33 -0.07 -6.88 16 10 N -0.71 3.78 5.07 -446.50 -2.27 1.52 16 11 C 0.14 -0.81 2.45 44.99 0.11 -0.70 16 12 H 0.07 0.03 7.58 -2.39 -0.02 0.01 16 13 C -0.12 0.74 5.49 30.60 0.17 0.91 16 14 C -0.10 0.75 5.19 30.60 0.16 0.90 16 15 C -0.04 0.39 2.48 -11.54 -0.03 0.36 16 16 H 0.13 -1.98 8.14 -2.39 -0.02 -2.00 16 17 C 0.41 -1.64 6.73 138.18 0.93 -0.71 16 18 N -0.54 0.80 9.12 -187.56 -1.71 -0.91 16 19 C 0.17 -0.28 11.20 83.96 0.94 0.66 16 20 C -0.32 -0.97 10.07 22.48 0.23 -0.75 16 21 C 0.51 3.70 7.75 84.88 0.66 4.35 16 22 O -0.59 -9.93 17.97 -5.26 -0.09 -10.03 16 23 N -0.61 0.86 5.25 -310.69 -1.63 -0.77 16 24 C -0.09 0.87 4.67 30.61 0.14 1.01 16 25 C -0.12 1.32 5.39 30.61 0.17 1.49 16 26 N -0.51 2.59 5.99 -171.94 -1.03 1.56 16 27 H 0.39 -3.13 8.70 -74.06 -0.64 -3.77 16 28 H 0.14 -1.28 7.96 -2.39 -0.02 -1.29 16 29 H -0.30 -0.47 7.11 99.48 0.71 0.23 16 30 H -0.28 0.30 7.11 99.48 0.71 1.01 16 31 H 0.16 -0.84 6.19 -2.91 -0.02 -0.86 16 32 H 0.14 0.52 8.06 -2.91 -0.02 0.50 16 33 H 0.41 -4.81 7.73 -92.71 -0.72 -5.53 16 34 H 0.05 0.00 8.14 -2.38 -0.02 -0.02 16 35 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 36 H 0.08 -0.62 8.14 -2.38 -0.02 -0.64 16 37 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.20 -1.55 8.06 -2.91 -0.02 -1.57 16 39 H 0.16 0.30 8.06 -2.91 -0.02 0.28 16 40 H 0.43 -2.61 8.78 -92.70 -0.81 -3.42 16 41 H 0.08 -0.43 7.76 -2.39 -0.02 -0.45 16 42 H 0.08 -0.81 8.14 -2.38 -0.02 -0.83 16 43 H 0.08 -0.90 8.14 -2.38 -0.02 -0.92 16 44 H 0.09 -1.44 8.14 -2.39 -0.02 -1.45 16 45 H 0.43 -4.62 8.19 -92.71 -0.76 -5.38 16 Total: 0.00 -30.78 375.55 -3.09 -33.87 By element: Atomic # 1 Polarization: -25.43 SS G_CDS: -1.82 Total: -27.25 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 5.36 Total: 11.40 kcal Atomic # 7 Polarization: 8.04 SS G_CDS: -6.64 Total: 1.40 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -2.09 Total: -16.83 kcal Atomic # 14 Polarization: -4.68 SS G_CDS: 2.10 Total: -2.58 kcal Total: -30.78 -3.09 -33.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_6580494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.363 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds