Wall clock time and date at job start Sat Mar 6 2021 20:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35965 * 117.00027 * 2 1 4 4 C 1.39454 * 120.11589 * 180.02562 * 3 2 1 5 5 O 1.34767 * 133.24393 * 359.97438 * 4 3 2 6 6 C 1.34927 * 110.84209 * 179.97438 * 5 4 3 7 7 C 1.46993 * 125.14173 * 180.27154 * 6 5 4 8 8 O 1.21654 * 120.00566 * 179.69388 * 7 6 5 9 9 N 1.34782 * 119.99994 * 359.69227 * 7 6 5 10 10 C 1.46496 * 120.00005 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47391 * 35.00302 * 10 9 7 12 12 C 1.52998 * 109.46933 * 154.99951 * 10 9 7 13 13 C 1.52998 * 109.47424 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47052 * 300.00148 * 13 12 10 15 15 H 1.08997 * 109.46829 * 299.99849 * 14 13 12 16 16 C 1.50698 * 109.47236 * 179.97438 * 14 13 12 17 17 N 1.30642 * 119.25444 * 335.00205 * 16 14 13 18 18 C 1.33516 * 121.50507 * 179.97438 * 17 16 14 19 19 C 1.36200 * 119.91390 * 0.02562 * 18 17 16 20 20 C 1.41022 * 118.58884 * 359.97438 * 19 18 17 21 21 O 1.21982 * 120.71130 * 180.02562 * 20 19 18 22 22 N 1.34740 * 119.25381 * 154.72472 * 16 14 13 23 23 C 1.53003 * 109.46640 * 59.99776 * 14 13 12 24 24 C 1.52992 * 109.47301 * 299.99760 * 23 14 13 25 25 C 1.35814 * 109.71992 * 0.02562 * 6 5 4 26 26 C 1.40612 * 119.13382 * 179.97438 * 4 3 2 27 27 C 1.39777 * 120.11613 * 0.02562 * 26 4 3 28 28 C 1.50701 * 120.09067 * 180.02562 * 27 26 4 29 29 O 1.42898 * 109.47455 * 284.99969 * 28 27 26 30 30 Si 1.86299 * 109.47136 * 165.00041 * 28 27 26 31 31 C 1.36626 * 119.81618 * 0.02562 * 27 26 4 32 32 C 1.38257 * 120.12144 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.46537 * 299.99737 * 1 2 3 34 34 H 1.09004 * 109.47060 * 59.99208 * 1 2 3 35 35 H 1.08995 * 109.46890 * 179.97438 * 1 2 3 36 36 H 0.97000 * 119.99817 * 0.02562 * 9 7 6 37 37 H 1.09000 * 109.47706 * 300.00043 * 12 10 9 38 38 H 1.09001 * 109.47533 * 59.99905 * 12 10 9 39 39 H 1.09002 * 109.47084 * 60.00239 * 13 12 10 40 40 H 1.08997 * 109.47395 * 179.97438 * 13 12 10 41 41 H 1.08003 * 120.04678 * 180.02562 * 18 17 16 42 42 H 1.07998 * 120.70806 * 180.02562 * 19 18 17 43 43 H 0.97002 * 120.04528 * 0.02562 * 22 16 14 44 44 H 1.08997 * 109.47450 * 60.00453 * 23 14 13 45 45 H 1.09001 * 109.46699 * 179.97438 * 23 14 13 46 46 H 1.09002 * 109.47338 * 300.00246 * 24 23 14 47 47 H 1.08997 * 109.47116 * 180.02562 * 24 23 14 48 48 H 1.07995 * 126.95359 * 179.97438 * 25 6 5 49 49 H 1.09000 * 109.47301 * 44.99974 * 28 27 26 50 50 H 0.96703 * 113.99855 * 300.00549 * 29 28 27 51 51 H 1.48500 * 110.00034 * 180.02562 * 30 28 27 52 52 H 1.48498 * 110.00030 * 301.31653 * 30 28 27 53 53 H 1.08007 * 119.75342 * 180.02562 * 31 27 26 54 54 H 1.07999 * 119.66422 * 359.97438 * 32 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4388 1.2872 -0.0005 5 8 4.4141 0.3572 -0.0007 6 6 5.6317 0.9384 -0.0018 7 6 6.9131 0.2182 -0.0080 8 8 7.9596 0.8384 -0.0142 9 7 6.9286 -1.1296 -0.0068 10 6 8.2057 -1.8474 -0.0123 11 1 8.9378 -1.2911 0.5730 12 6 8.0126 -3.2363 0.5996 13 6 9.3461 -3.9863 0.5932 14 6 9.8447 -4.1281 -0.8463 15 1 9.1122 -4.6842 -1.4313 16 6 11.1584 -4.8663 -0.8526 17 7 11.9117 -4.8381 0.2144 18 6 13.0836 -5.4763 0.2583 19 6 13.5168 -6.1764 -0.8267 20 6 12.7038 -6.2070 -1.9786 21 8 13.0538 -6.8224 -2.9720 22 7 11.5270 -5.5451 -1.9566 23 6 10.0377 -2.7391 -1.4582 24 6 8.7042 -1.9891 -1.4518 25 6 5.4946 2.2896 -0.0019 26 6 4.0556 2.5509 -0.0011 27 6 3.2767 3.7115 -0.0005 28 6 3.9384 5.0655 -0.0017 29 8 4.4623 5.3408 1.2990 30 14 2.6862 6.3682 -0.4552 31 6 1.9139 3.6150 0.0011 32 6 1.2958 2.3726 0.0005 33 1 -0.3632 0.5138 0.8901 34 1 -0.3633 0.5140 -0.8899 35 1 -0.3633 -1.0276 -0.0005 36 1 6.0942 -1.6242 -0.0022 37 1 7.6570 -3.1355 1.6250 38 1 7.2805 -3.7927 0.0143 39 1 10.0786 -3.4302 1.1783 40 1 9.2087 -4.9757 1.0296 41 1 13.6873 -5.4376 1.1530 42 1 14.4623 -6.6977 -0.8052 43 1 10.9497 -5.5550 -2.7360 44 1 10.7702 -2.1829 -0.8732 45 1 10.3933 -2.8400 -2.4836 46 1 7.9718 -2.5453 -2.0369 47 1 8.8417 -0.9998 -1.8881 48 1 6.2876 3.0227 -0.0024 49 1 4.7499 5.0727 -0.7293 50 1 3.7943 5.3502 1.9982 51 1 3.3264 7.7081 -0.4605 52 1 2.1106 6.0757 -1.7925 53 1 1.3130 4.5125 0.0011 54 1 0.2175 2.3120 0.0005 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_6672420.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:00:11 Heat of formation + Delta-G solvation = -68.920382 kcal Electronic energy + Delta-G solvation = -40414.639834 eV Core-core repulsion = 35092.128313 eV Total energy + Delta-G solvation = -5322.511522 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 426.172 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.76607 -42.90867 -41.24007 -40.55427 -39.62090 -39.06529 -38.52188 -36.99913 -35.96712 -35.24628 -33.66009 -32.71362 -31.92896 -31.82026 -31.13557 -30.06427 -28.48304 -26.42102 -26.05686 -25.52016 -24.64493 -23.99403 -23.76418 -22.67388 -21.89368 -21.72170 -21.00637 -19.81545 -19.69210 -19.16228 -18.97441 -18.53767 -17.88700 -17.81726 -17.75132 -17.37216 -17.08634 -16.93346 -16.58829 -16.26825 -16.18326 -15.90053 -15.75649 -15.71874 -15.62018 -15.21246 -15.09992 -14.74526 -14.55180 -14.50834 -14.44407 -14.18346 -14.08459 -14.02771 -13.56912 -13.49306 -13.38705 -13.27158 -13.19346 -12.60774 -12.40903 -12.38820 -12.28203 -12.15560 -12.08530 -12.05559 -11.90988 -11.67059 -11.59171 -11.40738 -11.29675 -11.09736 -11.02112 -10.44517 -10.30438 -9.82755 -9.67642 -9.00326 -5.00357 -0.68118 -0.46438 0.10252 0.60443 0.66989 1.16374 1.30464 1.54736 1.67963 1.88173 1.89632 2.00468 2.14540 2.40042 2.49331 2.76002 3.17132 3.39502 3.43801 3.56807 3.60740 3.62772 3.68405 3.69138 3.81717 3.87168 3.92599 3.98847 4.11826 4.14707 4.18247 4.26943 4.31572 4.34939 4.37217 4.41160 4.44845 4.46011 4.48347 4.49518 4.60289 4.78529 4.79245 4.82298 4.86587 4.87447 4.96131 5.03700 5.04965 5.12808 5.17786 5.20380 5.23542 5.29745 5.34272 5.36105 5.45421 5.50960 5.58775 6.20356 6.30314 6.65700 6.70008 6.78804 6.83459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.333 6.333 3 C 0.137 3.863 4 C 0.021 3.979 5 O -0.178 6.178 6 C -0.031 4.031 7 C 0.602 3.398 8 O -0.545 6.545 9 N -0.698 5.698 10 C 0.140 3.860 11 H 0.077 0.923 12 C -0.119 4.119 13 C -0.091 4.091 14 C -0.041 4.041 15 H 0.132 0.868 16 C 0.410 3.590 17 N -0.544 5.544 18 C 0.173 3.827 19 C -0.318 4.318 20 C 0.509 3.491 21 O -0.593 6.593 22 N -0.615 5.615 23 C -0.103 4.103 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.100 4.100 27 C -0.109 4.109 28 C -0.080 4.080 29 O -0.555 6.555 30 Si 0.795 3.205 31 C -0.079 4.079 32 C -0.166 4.166 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.418 0.582 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.198 0.802 42 H 0.159 0.841 43 H 0.428 0.572 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.054 0.946 48 H 0.167 0.833 49 H 0.097 0.903 50 H 0.396 0.604 51 H -0.301 1.301 52 H -0.280 1.280 53 H 0.175 0.825 54 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.948 0.908 4.235 13.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.091 3.909 4 C -0.027 4.027 5 O -0.080 6.080 6 C -0.082 4.082 7 C 0.388 3.612 8 O -0.424 6.424 9 N -0.348 5.348 10 C 0.036 3.964 11 H 0.095 0.905 12 C -0.157 4.157 13 C -0.129 4.129 14 C -0.061 4.061 15 H 0.149 0.851 16 C 0.145 3.855 17 N -0.267 5.267 18 C 0.034 3.966 19 C -0.343 4.343 20 C 0.310 3.690 21 O -0.476 6.476 22 N -0.253 5.253 23 C -0.142 4.142 24 C -0.161 4.161 25 C -0.140 4.140 26 C -0.101 4.101 27 C -0.110 4.110 28 C -0.188 4.188 29 O -0.363 6.363 30 Si 0.699 3.301 31 C -0.096 4.096 32 C -0.184 4.184 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.255 0.745 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.215 0.785 42 H 0.177 0.823 43 H 0.269 0.731 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.108 0.892 47 H 0.073 0.927 48 H 0.185 0.815 49 H 0.114 0.886 50 H 0.246 0.754 51 H -0.230 1.230 52 H -0.207 1.207 53 H 0.192 0.808 54 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.574 1.392 3.596 12.200 hybrid contribution 0.788 -0.929 -1.405 1.860 sum -10.786 0.463 2.191 11.016 Atomic orbital electron populations 1.23498 0.75271 1.06040 1.03223 1.86144 1.24339 1.25768 1.88433 1.17988 0.86039 0.86935 0.99931 1.19203 0.88298 0.87011 1.08213 1.84003 1.12632 1.34946 1.76461 1.21999 0.84182 0.92655 1.09328 1.16659 0.84797 0.83018 0.76751 1.90900 1.31338 1.68341 1.51816 1.45936 1.11475 1.04643 1.72730 1.21259 0.84214 0.93573 0.97315 0.90475 1.21804 0.98646 0.92715 1.02503 1.21322 0.96182 1.02001 0.93445 1.20680 0.88620 0.95548 1.01248 0.85074 1.23677 0.95592 0.85339 0.80845 1.68389 1.07918 1.26263 1.24122 1.23182 0.89969 0.85366 0.98114 1.23004 1.05237 1.11678 0.94351 1.17671 0.81627 0.79766 0.89984 1.90989 1.73295 1.46276 1.37042 1.44637 1.20675 1.42242 1.17701 1.21488 0.97859 0.93147 1.01699 1.21847 0.97239 1.00753 0.96267 1.22834 0.95411 0.94589 1.01129 1.19604 0.92345 0.93005 1.05115 1.19675 0.93801 0.93915 1.03614 1.25348 1.05783 0.98669 0.89044 1.86505 1.39680 1.93350 1.16773 0.93858 0.80362 0.73148 0.82700 1.20790 0.92417 0.98647 0.97763 1.21427 1.01977 0.89549 1.05487 0.90426 0.90746 0.86660 0.74501 0.90009 0.88827 0.90417 0.89804 0.78478 0.82343 0.73102 0.91471 0.90245 0.89233 0.92677 0.81528 0.88581 0.75434 1.22958 1.20660 0.80812 0.79958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.12 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.25 10.50 -93.15 -0.98 -1.23 16 3 C 0.14 0.21 6.70 22.57 0.15 0.36 16 4 C 0.02 0.13 7.35 23.14 0.17 0.30 16 5 O -0.18 -1.20 10.28 -13.31 -0.14 -1.34 16 6 C -0.03 -0.22 7.07 24.00 0.17 -0.05 16 7 C 0.60 3.87 7.76 86.54 0.67 4.54 16 8 O -0.54 -7.01 16.49 -4.20 -0.07 -7.08 16 9 N -0.70 0.75 5.07 -446.22 -2.26 -1.52 16 10 C 0.14 -0.51 2.45 44.99 0.11 -0.40 16 11 H 0.08 0.08 7.58 -2.39 -0.02 0.06 16 12 C -0.12 1.07 5.39 30.59 0.16 1.24 16 13 C -0.09 0.75 4.67 30.60 0.14 0.89 16 14 C -0.04 0.36 2.48 -11.54 -0.03 0.33 16 15 H 0.13 -1.84 8.14 -2.39 -0.02 -1.85 16 16 C 0.41 -1.37 6.73 138.18 0.93 -0.44 16 17 N -0.54 0.48 9.11 -187.56 -1.71 -1.23 16 18 C 0.17 -0.19 11.20 83.96 0.94 0.75 16 19 C -0.32 -1.11 10.07 22.48 0.23 -0.89 16 20 C 0.51 3.95 7.75 84.88 0.66 4.60 16 21 O -0.59 -10.18 17.97 -5.26 -0.09 -10.28 16 22 N -0.62 0.49 5.25 -310.69 -1.63 -1.14 16 23 C -0.10 0.67 5.18 30.59 0.16 0.83 16 24 C -0.12 0.60 5.49 30.59 0.17 0.77 16 25 C -0.12 -0.94 10.68 23.79 0.25 -0.69 16 26 C -0.10 -0.58 6.16 -20.25 -0.12 -0.70 16 27 C -0.11 -0.06 5.26 -19.87 -0.10 -0.17 16 28 C -0.08 0.00 2.70 71.24 0.19 0.20 16 29 O -0.55 -0.57 12.88 -148.98 -1.92 -2.49 16 30 Si 0.79 -3.34 29.92 68.60 2.05 -1.29 16 31 C -0.08 0.41 8.62 22.02 0.19 0.60 16 32 C -0.17 0.82 9.03 22.40 0.20 1.02 16 33 H 0.08 -0.92 7.66 -2.39 -0.02 -0.94 16 34 H 0.07 -0.85 7.66 -2.38 -0.02 -0.87 16 35 H 0.12 -1.25 8.14 -2.39 -0.02 -1.27 16 36 H 0.42 -2.05 8.32 -92.71 -0.77 -2.82 16 37 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 38 H 0.09 -1.17 8.14 -2.39 -0.02 -1.19 16 39 H 0.08 -0.38 7.76 -2.39 -0.02 -0.40 16 40 H 0.08 -0.73 8.14 -2.39 -0.02 -0.74 16 41 H 0.20 -1.46 8.06 -2.91 -0.02 -1.48 16 42 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 43 H 0.43 -2.33 8.78 -92.71 -0.81 -3.14 16 44 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 46 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 47 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 49 H 0.10 0.27 7.96 -2.39 -0.02 0.25 16 50 H 0.40 -3.15 8.70 -74.06 -0.64 -3.79 16 51 H -0.30 -1.22 7.11 99.48 0.71 -0.52 16 52 H -0.28 -0.02 7.11 99.48 0.71 0.69 16 53 H 0.18 -2.18 5.07 -2.91 -0.01 -2.20 16 54 H 0.18 -2.25 6.26 -2.91 -0.02 -2.27 16 Total: 0.00 -35.06 447.46 -1.58 -36.64 By element: Atomic # 1 Polarization: -21.95 SS G_CDS: -1.19 Total: -23.14 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 6.35 Total: 14.07 kcal Atomic # 7 Polarization: 1.72 SS G_CDS: -5.60 Total: -3.88 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -3.20 Total: -22.41 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: 2.05 Total: -1.29 kcal Total: -35.06 -1.58 -36.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_6672420.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.280 kcal (2) G-P(sol) polarization free energy of solvation -35.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds