Wall clock time and date at job start Sat Mar 6 2021 20:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33817 * 122.44644 * 2 1 4 4 C 1.50693 * 124.52558 * 359.95884 * 3 2 1 5 5 O 1.42897 * 109.46955 * 329.99992 * 4 3 2 6 6 Si 1.86304 * 109.47444 * 209.99840 * 4 3 2 7 7 S 1.70622 * 110.95293 * 179.97438 * 3 2 1 8 8 C 1.75831 * 91.56240 * 0.02562 * 7 3 2 9 9 C 1.46583 * 125.45674 * 180.02562 * 8 7 3 10 10 O 1.21703 * 120.00189 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99851 * 0.02562 * 9 8 7 12 12 C 1.46503 * 119.99777 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.47438 * 35.00002 * 12 11 9 14 14 C 1.52998 * 109.47230 * 155.00145 * 12 11 9 15 15 C 1.52998 * 109.47474 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.47008 * 300.00397 * 15 14 12 17 17 H 1.08997 * 109.46741 * 299.98909 * 16 15 14 18 18 C 1.50706 * 109.46616 * 179.97438 * 16 15 14 19 19 N 1.30633 * 119.25763 * 335.01529 * 18 16 15 20 20 C 1.33515 * 121.50886 * 179.71529 * 19 18 16 21 21 C 1.36204 * 119.90743 * 0.53042 * 20 19 18 22 22 C 1.41023 * 118.58995 * 359.48307 * 21 20 19 23 23 O 1.21987 * 120.70631 * 180.27550 * 22 21 20 24 24 N 1.34748 * 119.24745 * 154.99824 * 18 16 15 25 25 C 1.52994 * 109.47491 * 59.99845 * 16 15 14 26 26 C 1.53000 * 109.46940 * 274.99957 * 12 11 9 27 27 C 1.36647 * 109.08597 * 0.26447 * 8 7 3 28 28 H 1.08994 * 109.47234 * 89.99939 * 1 2 3 29 29 H 1.09009 * 109.46935 * 209.99832 * 1 2 3 30 30 H 1.09004 * 109.47064 * 329.99551 * 1 2 3 31 31 H 1.09001 * 109.47109 * 89.99620 * 4 3 2 32 32 H 0.96707 * 114.00125 * 180.02562 * 5 4 3 33 33 H 1.48499 * 109.99585 * 59.99759 * 6 4 3 34 34 H 1.48499 * 110.00260 * 181.31659 * 6 4 3 35 35 H 0.97002 * 120.00520 * 0.02562 * 11 9 8 36 36 H 1.09008 * 109.47266 * 59.99784 * 14 12 11 37 37 H 1.08998 * 109.47320 * 299.99926 * 14 12 11 38 38 H 1.09002 * 109.47579 * 179.97438 * 15 14 12 39 39 H 1.09008 * 109.46807 * 59.99801 * 15 14 12 40 40 H 1.07998 * 120.05039 * 180.28597 * 20 19 18 41 41 H 1.08002 * 120.70805 * 179.76896 * 21 20 19 42 42 H 0.96993 * 120.04757 * 0.04279 * 24 18 16 43 43 H 1.08999 * 109.47286 * 59.99328 * 25 16 15 44 44 H 1.08998 * 109.47484 * 179.97438 * 25 16 15 45 45 H 1.08999 * 109.47673 * 299.99815 * 26 12 11 46 46 H 1.08999 * 109.47345 * 60.00320 * 26 12 11 47 47 H 1.07990 * 123.35312 * 179.73840 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1293 0.0000 4 6 1.6354 2.5161 -0.0009 5 8 0.3757 2.4978 -0.6753 6 14 2.7929 3.6825 -0.8788 7 16 3.8969 0.7893 0.0007 8 6 3.5937 -0.9427 0.0002 9 6 4.6231 -1.9862 0.0010 10 8 4.3002 -3.1596 0.0001 11 7 5.9273 -1.6461 0.0028 12 6 6.9562 -2.6891 0.0030 13 1 6.6128 -3.5384 -0.5875 14 6 8.2457 -2.1335 -0.6046 15 6 9.3204 -3.2224 -0.6038 16 6 9.5873 -3.6745 0.8333 17 1 9.9306 -2.8249 1.4236 18 6 10.6455 -4.7476 0.8340 19 7 10.8176 -5.4751 -0.2373 20 6 11.7455 -6.4338 -0.2880 21 6 12.5305 -6.6772 0.7981 22 6 12.3448 -5.8919 1.9546 23 8 13.0300 -6.0735 2.9475 24 7 11.3928 -4.9346 1.9395 25 6 8.2978 -4.2302 1.4410 26 6 7.2232 -3.1416 1.4400 27 6 2.2446 -1.1601 -0.0064 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.4926 2.8509 1.0266 32 1 -0.0621 3.3592 -0.7144 33 1 2.9958 3.2369 -2.2808 34 1 2.2379 5.0597 -0.8588 35 1 6.1847 -0.7109 0.0039 36 1 8.5892 -1.2840 -0.0141 37 1 8.0555 -1.8110 -1.6283 38 1 10.2390 -2.8267 -1.0372 39 1 8.9772 -4.0721 -1.1942 40 1 11.8707 -7.0182 -1.1875 41 1 13.2825 -7.4521 0.7726 42 1 11.2468 -4.3825 2.7235 43 1 7.9546 -5.0797 0.8506 44 1 8.4880 -4.5527 2.4646 45 1 7.5667 -2.2923 2.0306 46 1 6.3046 -3.5375 1.8729 47 1 1.8020 -2.1451 -0.0122 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13456076_6739946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:00:16 Heat of formation + Delta-G solvation = -37.159616 kcal Electronic energy + Delta-G solvation = -30991.568501 eV Core-core repulsion = 26653.403141 eV Total energy + Delta-G solvation = -4338.165360 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.85370 -41.16464 -40.02076 -39.38324 -38.37733 -37.55589 -35.86615 -35.13119 -32.83782 -32.12011 -31.97135 -30.30559 -30.12991 -26.80754 -25.68213 -25.24311 -24.24525 -23.93242 -22.70189 -21.66205 -21.10852 -20.00865 -19.73799 -19.20536 -19.03317 -18.58756 -17.84153 -17.55053 -16.98933 -16.98477 -16.42857 -16.23569 -16.04058 -15.76005 -15.57528 -15.34786 -15.31151 -14.90720 -14.57427 -14.52850 -14.38183 -14.25361 -14.07371 -14.02538 -13.58133 -13.36379 -13.20799 -13.13979 -12.95931 -12.67294 -12.55132 -12.48431 -12.33761 -12.16001 -12.04665 -11.98841 -11.78944 -11.48580 -11.20899 -11.10767 -11.05449 -10.87213 -10.19555 -9.62902 -9.55449 -9.37281 -5.27171 -0.59601 -0.46054 0.27012 0.68866 0.79647 0.99833 1.34475 1.44913 1.56885 1.78758 1.98464 2.20515 2.55879 2.68202 3.04544 3.25703 3.41430 3.51898 3.55730 3.61309 3.71111 3.80803 3.97445 3.99773 4.09893 4.12734 4.17576 4.24195 4.24341 4.28545 4.41102 4.43131 4.52174 4.59575 4.60003 4.78296 4.84639 4.86287 4.89581 4.90631 4.94377 5.01740 5.06302 5.10857 5.21409 5.36772 5.42190 5.43344 5.44473 5.48881 6.21857 6.35530 6.70665 6.80745 7.11067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.090 4.090 3 C -0.196 4.196 4 C -0.033 4.033 5 O -0.524 6.524 6 Si 0.659 3.341 7 S 0.202 5.798 8 C -0.264 4.264 9 C 0.595 3.405 10 O -0.523 6.523 11 N -0.725 5.725 12 C 0.144 3.856 13 H 0.096 0.904 14 C -0.129 4.129 15 C -0.095 4.095 16 C -0.046 4.046 17 H 0.102 0.898 18 C 0.403 3.597 19 N -0.533 5.533 20 C 0.156 3.844 21 C -0.293 4.293 22 C 0.520 3.480 23 O -0.537 6.537 24 N -0.627 5.627 25 C -0.109 4.109 26 C -0.128 4.128 27 C -0.047 4.047 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.382 0.618 33 H -0.242 1.242 34 H -0.242 1.242 35 H 0.398 0.602 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.170 0.830 41 H 0.157 0.843 42 H 0.418 0.582 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 7.347 -0.649 7.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.315 4.315 4 C -0.145 4.145 5 O -0.332 6.332 6 Si 0.557 3.443 7 S 0.470 5.530 8 C -0.384 4.384 9 C 0.381 3.619 10 O -0.401 6.401 11 N -0.376 5.376 12 C 0.040 3.960 13 H 0.114 0.886 14 C -0.167 4.167 15 C -0.134 4.134 16 C -0.067 4.067 17 H 0.120 0.880 18 C 0.138 3.862 19 N -0.256 5.256 20 C 0.018 3.982 21 C -0.318 4.318 22 C 0.318 3.682 23 O -0.415 6.415 24 N -0.265 5.265 25 C -0.148 4.148 26 C -0.166 4.166 27 C -0.080 4.080 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.231 0.769 33 H -0.166 1.166 34 H -0.166 1.166 35 H 0.233 0.767 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.188 0.812 41 H 0.175 0.825 42 H 0.256 0.744 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.361 7.074 -1.629 7.268 hybrid contribution -1.868 -0.043 0.887 2.069 sum -1.507 7.031 -0.742 7.228 Atomic orbital electron populations 1.20514 0.88692 1.02491 1.02795 1.18708 0.98547 0.90571 1.02401 1.23271 0.98345 0.98535 1.11331 1.24026 0.91504 0.97582 1.01354 1.86688 1.31778 1.35549 1.79200 0.95575 0.85992 0.78652 0.84131 1.82569 1.02205 0.98662 1.69532 1.24581 0.97961 0.96750 1.19066 1.16921 0.81602 0.87371 0.75988 1.90864 1.81561 1.18120 1.49531 1.45917 1.05294 1.10202 1.76161 1.21080 0.86916 0.91141 0.96841 0.88606 1.21869 0.93852 0.98799 1.02193 1.21367 0.99039 0.99244 0.93721 1.20567 0.91783 0.93563 1.00770 0.88023 1.23203 0.88688 0.92681 0.81602 1.68289 1.23464 1.10298 1.23552 1.22761 0.87003 0.90414 0.98003 1.22976 1.08014 1.06745 0.94050 1.17360 0.80049 0.80586 0.90195 1.91030 1.46092 1.69011 1.35393 1.44768 1.31775 1.33330 1.16659 1.21556 0.92559 0.99229 1.01417 1.21909 0.99270 0.98598 0.96854 1.20716 0.90967 1.00098 0.96223 0.90979 0.92104 0.90391 0.89476 0.76939 1.16564 1.16576 0.76728 0.90953 0.90222 0.90524 0.89167 0.81244 0.82537 0.74367 0.90111 0.91019 0.91118 0.90391 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.04 8.70 36.00 0.31 0.27 16 2 C -0.09 -0.11 5.75 -106.45 -0.61 -0.73 16 3 C -0.20 -0.01 5.57 -35.86 -0.20 -0.21 16 4 C -0.03 0.06 2.75 36.00 0.10 0.16 16 5 O -0.52 0.58 9.81 -35.23 -0.35 0.23 16 6 Si 0.66 -1.45 31.31 -169.99 -5.32 -6.77 16 7 S 0.20 -0.33 19.79 -107.50 -2.13 -2.46 16 8 C -0.26 -0.27 6.45 -36.79 -0.24 -0.51 16 9 C 0.59 1.04 7.75 -12.90 -0.10 0.94 16 10 O -0.52 -2.81 16.50 5.19 0.09 -2.73 16 11 N -0.72 1.18 5.07 -55.14 -0.28 0.90 16 12 C 0.14 -0.34 2.45 -67.93 -0.17 -0.50 16 13 H 0.10 -0.02 7.58 -51.93 -0.39 -0.41 16 14 C -0.13 0.57 5.39 -26.73 -0.14 0.43 16 15 C -0.10 0.37 4.67 -26.73 -0.12 0.24 16 16 C -0.05 0.19 2.48 -91.77 -0.23 -0.04 16 17 H 0.10 -0.61 8.14 -51.93 -0.42 -1.04 16 18 C 0.40 -0.65 6.73 -155.57 -1.05 -1.70 16 19 N -0.53 0.19 9.11 -10.63 -0.10 0.09 16 20 C 0.16 -0.08 11.20 -17.55 -0.20 -0.28 16 21 C -0.29 -0.34 10.07 -39.26 -0.40 -0.74 16 22 C 0.52 1.58 7.75 -15.09 -0.12 1.46 16 23 O -0.54 -3.90 17.97 4.93 0.09 -3.81 16 24 N -0.63 0.44 5.25 -12.27 -0.06 0.37 16 25 C -0.11 0.37 5.18 -26.75 -0.14 0.23 16 26 C -0.13 0.36 5.49 -26.75 -0.15 0.21 16 27 C -0.05 -0.08 9.80 -40.43 -0.40 -0.48 16 28 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.06 -0.01 8.13 -51.92 -0.42 -0.44 16 30 H 0.08 0.02 6.42 -51.93 -0.33 -0.32 16 31 H 0.09 -0.30 7.96 -51.93 -0.41 -0.71 16 32 H 0.38 -1.89 8.74 45.56 0.40 -1.50 16 33 H -0.24 -0.32 7.11 56.52 0.40 0.08 16 34 H -0.24 0.15 7.11 56.52 0.40 0.56 16 35 H 0.40 -1.57 7.72 -40.82 -0.31 -1.88 16 36 H 0.07 -0.41 8.14 -51.92 -0.42 -0.83 16 37 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 38 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 39 H 0.09 -0.23 7.76 -51.92 -0.40 -0.63 16 40 H 0.17 -0.54 8.06 -52.49 -0.42 -0.97 16 41 H 0.16 0.04 8.06 -52.49 -0.42 -0.38 16 42 H 0.42 -1.22 8.78 -40.82 -0.36 -1.58 16 43 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 44 H 0.07 -0.27 8.14 -51.93 -0.42 -0.69 16 45 H 0.07 -0.28 8.14 -51.93 -0.42 -0.71 16 46 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 47 H 0.16 0.25 8.06 -52.49 -0.42 -0.17 16 LS Contribution 397.75 15.07 5.99 5.99 Total: 0.00 -11.47 397.75 -12.42 -23.89 By element: Atomic # 1 Polarization: -7.97 SS G_CDS: -6.51 Total: -14.48 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -3.84 Total: -1.23 kcal Atomic # 7 Polarization: 1.80 SS G_CDS: -0.44 Total: 1.36 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.17 Total: -6.31 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: -5.32 Total: -6.77 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -2.13 Total: -2.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -11.47 -12.42 -23.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_6739946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.268 kcal (2) G-P(sol) polarization free energy of solvation -11.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds