Wall clock time and date at job start Sat Mar 6 2021 20:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33817 * 122.44644 * 2 1 4 4 C 1.50693 * 124.52558 * 359.95884 * 3 2 1 5 5 O 1.42897 * 109.46955 * 329.99992 * 4 3 2 6 6 Si 1.86304 * 109.47444 * 209.99840 * 4 3 2 7 7 S 1.70622 * 110.95293 * 179.97438 * 3 2 1 8 8 C 1.75831 * 91.56240 * 0.02562 * 7 3 2 9 9 C 1.46583 * 125.45674 * 180.02562 * 8 7 3 10 10 O 1.21703 * 120.00189 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99851 * 0.02562 * 9 8 7 12 12 C 1.46503 * 119.99777 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.47438 * 35.00002 * 12 11 9 14 14 C 1.52998 * 109.47230 * 155.00145 * 12 11 9 15 15 C 1.52998 * 109.47474 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.47008 * 300.00397 * 15 14 12 17 17 H 1.08997 * 109.46741 * 299.98909 * 16 15 14 18 18 C 1.50706 * 109.46616 * 179.97438 * 16 15 14 19 19 N 1.30633 * 119.25763 * 335.01529 * 18 16 15 20 20 C 1.33515 * 121.50886 * 179.71529 * 19 18 16 21 21 C 1.36204 * 119.90743 * 0.53042 * 20 19 18 22 22 C 1.41023 * 118.58995 * 359.48307 * 21 20 19 23 23 O 1.21987 * 120.70631 * 180.27550 * 22 21 20 24 24 N 1.34748 * 119.24745 * 154.99824 * 18 16 15 25 25 C 1.52994 * 109.47491 * 59.99845 * 16 15 14 26 26 C 1.53000 * 109.46940 * 274.99957 * 12 11 9 27 27 C 1.36647 * 109.08597 * 0.26447 * 8 7 3 28 28 H 1.08994 * 109.47234 * 89.99939 * 1 2 3 29 29 H 1.09009 * 109.46935 * 209.99832 * 1 2 3 30 30 H 1.09004 * 109.47064 * 329.99551 * 1 2 3 31 31 H 1.09001 * 109.47109 * 89.99620 * 4 3 2 32 32 H 0.96707 * 114.00125 * 180.02562 * 5 4 3 33 33 H 1.48499 * 109.99585 * 59.99759 * 6 4 3 34 34 H 1.48499 * 110.00260 * 181.31659 * 6 4 3 35 35 H 0.97002 * 120.00520 * 0.02562 * 11 9 8 36 36 H 1.09008 * 109.47266 * 59.99784 * 14 12 11 37 37 H 1.08998 * 109.47320 * 299.99926 * 14 12 11 38 38 H 1.09002 * 109.47579 * 179.97438 * 15 14 12 39 39 H 1.09008 * 109.46807 * 59.99801 * 15 14 12 40 40 H 1.07998 * 120.05039 * 180.28597 * 20 19 18 41 41 H 1.08002 * 120.70805 * 179.76896 * 21 20 19 42 42 H 0.96993 * 120.04757 * 0.04279 * 24 18 16 43 43 H 1.08999 * 109.47286 * 59.99328 * 25 16 15 44 44 H 1.08998 * 109.47484 * 179.97438 * 25 16 15 45 45 H 1.08999 * 109.47673 * 299.99815 * 26 12 11 46 46 H 1.08999 * 109.47345 * 60.00320 * 26 12 11 47 47 H 1.07990 * 123.35312 * 179.73840 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1293 0.0000 4 6 1.6354 2.5161 -0.0009 5 8 0.3757 2.4978 -0.6753 6 14 2.7929 3.6825 -0.8788 7 16 3.8969 0.7893 0.0007 8 6 3.5937 -0.9427 0.0002 9 6 4.6231 -1.9862 0.0010 10 8 4.3002 -3.1596 0.0001 11 7 5.9273 -1.6461 0.0028 12 6 6.9562 -2.6891 0.0030 13 1 6.6128 -3.5384 -0.5875 14 6 8.2457 -2.1335 -0.6046 15 6 9.3204 -3.2224 -0.6038 16 6 9.5873 -3.6745 0.8333 17 1 9.9306 -2.8249 1.4236 18 6 10.6455 -4.7476 0.8340 19 7 10.8176 -5.4751 -0.2373 20 6 11.7455 -6.4338 -0.2880 21 6 12.5305 -6.6772 0.7981 22 6 12.3448 -5.8919 1.9546 23 8 13.0300 -6.0735 2.9475 24 7 11.3928 -4.9346 1.9395 25 6 8.2978 -4.2302 1.4410 26 6 7.2232 -3.1416 1.4400 27 6 2.2446 -1.1601 -0.0064 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.4926 2.8509 1.0266 32 1 -0.0621 3.3592 -0.7144 33 1 2.9958 3.2369 -2.2808 34 1 2.2379 5.0597 -0.8588 35 1 6.1847 -0.7109 0.0039 36 1 8.5892 -1.2840 -0.0141 37 1 8.0555 -1.8110 -1.6283 38 1 10.2390 -2.8267 -1.0372 39 1 8.9772 -4.0721 -1.1942 40 1 11.8707 -7.0182 -1.1875 41 1 13.2825 -7.4521 0.7726 42 1 11.2468 -4.3825 2.7235 43 1 7.9546 -5.0797 0.8506 44 1 8.4880 -4.5527 2.4646 45 1 7.5667 -2.2923 2.0306 46 1 6.3046 -3.5375 1.8729 47 1 1.8020 -2.1451 -0.0122 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_6739946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:00:15 Heat of formation + Delta-G solvation = -39.213458 kcal Electronic energy + Delta-G solvation = -30991.657563 eV Core-core repulsion = 26653.403141 eV Total energy + Delta-G solvation = -4338.254421 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.87749 -41.18177 -39.96648 -39.41526 -38.45461 -37.47421 -35.86073 -35.16247 -32.84934 -32.07459 -31.76099 -30.25252 -30.08149 -26.78481 -25.66877 -25.22214 -24.22281 -23.70034 -22.61358 -21.67183 -20.93198 -19.97513 -19.74173 -19.21998 -19.02511 -18.48032 -17.80270 -17.51177 -17.05142 -16.96496 -16.40132 -16.19378 -16.04394 -15.71364 -15.60544 -15.24049 -15.13317 -14.90307 -14.58106 -14.50545 -14.39690 -14.16788 -14.05113 -13.95670 -13.43449 -13.20698 -13.16761 -13.09475 -12.94157 -12.58161 -12.48155 -12.32502 -12.11708 -12.09134 -12.01295 -11.97254 -11.58274 -11.38598 -11.32038 -11.15446 -11.05728 -10.79258 -10.17166 -9.65055 -9.57877 -9.32145 -5.11741 -0.62820 -0.43584 0.31788 0.69846 0.70524 1.07856 1.36500 1.55048 1.58097 1.91496 2.03209 2.11572 2.52172 2.80306 3.24999 3.43506 3.58340 3.65469 3.66351 3.74290 3.79135 4.00360 4.14314 4.18142 4.19914 4.31468 4.34967 4.38491 4.42541 4.43660 4.52004 4.55396 4.58631 4.67196 4.85000 4.86505 4.87761 4.90772 5.00460 5.04975 5.10958 5.19834 5.25172 5.33872 5.37099 5.40329 5.41697 5.45176 5.49660 5.57986 6.41683 6.56079 6.68723 6.73120 7.09230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.042 4.042 5 O -0.542 6.542 6 Si 0.735 3.265 7 S 0.277 5.723 8 C -0.287 4.287 9 C 0.591 3.409 10 O -0.571 6.571 11 N -0.708 5.708 12 C 0.142 3.858 13 H 0.068 0.932 14 C -0.119 4.119 15 C -0.092 4.092 16 C -0.040 4.040 17 H 0.135 0.865 18 C 0.410 3.590 19 N -0.545 5.545 20 C 0.173 3.827 21 C -0.319 4.319 22 C 0.509 3.491 23 O -0.593 6.593 24 N -0.614 5.614 25 C -0.104 4.104 26 C -0.121 4.121 27 C -0.064 4.064 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.398 0.602 33 H -0.292 1.292 34 H -0.260 1.260 35 H 0.412 0.588 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.197 0.803 41 H 0.158 0.842 42 H 0.429 0.571 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.051 0.949 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 10.024 -0.607 10.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C -0.327 4.327 4 C -0.152 4.152 5 O -0.353 6.353 6 Si 0.637 3.363 7 S 0.546 5.454 8 C -0.407 4.407 9 C 0.378 3.622 10 O -0.452 6.452 11 N -0.359 5.359 12 C 0.038 3.962 13 H 0.086 0.914 14 C -0.157 4.157 15 C -0.131 4.131 16 C -0.060 4.060 17 H 0.153 0.847 18 C 0.146 3.854 19 N -0.268 5.268 20 C 0.034 3.966 21 C -0.344 4.344 22 C 0.310 3.690 23 O -0.476 6.476 24 N -0.252 5.252 25 C -0.143 4.143 26 C -0.160 4.160 27 C -0.098 4.098 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.131 0.869 32 H 0.249 0.751 33 H -0.219 1.219 34 H -0.184 1.184 35 H 0.249 0.751 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.214 0.786 41 H 0.176 0.824 42 H 0.270 0.730 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.070 0.930 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.977 9.821 -1.573 9.994 hybrid contribution -2.155 -0.786 0.751 2.413 sum -1.178 9.035 -0.822 9.149 Atomic orbital electron populations 1.20462 0.88631 1.02725 1.02242 1.18766 0.98904 0.90817 1.03936 1.23725 0.99693 0.99174 1.10110 1.24288 0.91516 0.96468 1.02960 1.86654 1.32109 1.37195 1.79361 0.94822 0.84323 0.76529 0.80648 1.82162 1.00282 0.95459 1.67473 1.24676 0.97617 0.98771 1.19606 1.17120 0.82661 0.86870 0.75511 1.90834 1.82391 1.20028 1.51935 1.45823 1.04320 1.11212 1.74573 1.21147 0.87594 0.90393 0.97087 0.91366 1.21818 0.92067 0.99187 1.02625 1.21326 0.99395 0.98899 0.93439 1.20692 0.90406 0.93581 1.01309 0.84715 1.23728 0.88359 0.92524 0.80827 1.68385 1.23594 1.10628 1.24203 1.23168 0.85570 0.89714 0.98196 1.23001 1.09460 1.07627 0.94279 1.17651 0.80159 0.81199 0.90004 1.90990 1.48484 1.70936 1.37231 1.44621 1.30722 1.32431 1.17405 1.21483 0.92692 0.98527 1.01574 1.21832 0.98267 0.99372 0.96499 1.20724 0.91684 0.99988 0.97421 0.91923 0.92059 0.89947 0.86947 0.75063 1.21857 1.18441 0.75063 0.88266 0.90011 0.89788 0.90843 0.78607 0.82437 0.73027 0.91970 0.90309 0.88757 0.93037 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.17 8.70 71.23 0.62 0.45 16 2 C -0.11 -0.38 5.75 -21.05 -0.12 -0.50 16 3 C -0.21 0.09 5.57 24.68 0.14 0.23 16 4 C -0.04 0.20 2.75 71.23 0.20 0.39 16 5 O -0.54 1.55 9.81 -148.98 -1.46 0.08 16 6 Si 0.74 -4.20 31.31 68.60 2.15 -2.05 16 7 S 0.28 -1.24 19.79 -56.49 -1.12 -2.36 16 8 C -0.29 -0.81 6.45 24.08 0.16 -0.65 16 9 C 0.59 2.78 7.75 86.42 0.67 3.45 16 10 O -0.57 -7.67 16.50 -4.36 -0.07 -7.75 16 11 N -0.71 2.55 5.07 -446.59 -2.27 0.29 16 12 C 0.14 -0.69 2.45 44.99 0.11 -0.58 16 13 H 0.07 0.09 7.58 -2.39 -0.02 0.07 16 14 C -0.12 1.29 5.39 30.59 0.16 1.46 16 15 C -0.09 0.85 4.67 30.60 0.14 0.99 16 16 C -0.04 0.39 2.48 -11.54 -0.03 0.36 16 17 H 0.14 -2.12 8.14 -2.39 -0.02 -2.14 16 18 C 0.41 -1.68 6.73 138.19 0.93 -0.75 16 19 N -0.54 0.72 9.11 -187.56 -1.71 -0.99 16 20 C 0.17 -0.24 11.20 83.96 0.94 0.70 16 21 C -0.32 -1.00 10.07 22.48 0.23 -0.78 16 22 C 0.51 3.65 7.75 84.89 0.66 4.31 16 23 O -0.59 -9.85 17.97 -5.27 -0.09 -9.95 16 24 N -0.61 0.99 5.25 -310.68 -1.63 -0.64 16 25 C -0.10 0.75 5.18 30.58 0.16 0.91 16 26 C -0.12 0.74 5.49 30.58 0.17 0.91 16 27 C -0.06 -0.34 9.80 21.72 0.21 -0.13 16 28 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.06 0.07 8.13 -2.38 -0.02 0.06 16 30 H 0.08 0.06 6.42 -2.39 -0.02 0.04 16 31 H 0.11 -1.06 7.96 -2.39 -0.02 -1.07 16 32 H 0.40 -4.34 8.74 -74.05 -0.65 -4.99 16 33 H -0.29 -0.80 7.11 99.48 0.71 -0.09 16 34 H -0.26 0.70 7.11 99.48 0.71 1.41 16 35 H 0.41 -3.99 7.72 -92.71 -0.72 -4.70 16 36 H 0.10 -1.53 8.14 -2.38 -0.02 -1.55 16 37 H 0.08 -0.84 8.14 -2.39 -0.02 -0.86 16 38 H 0.08 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H 0.07 -0.39 7.76 -2.38 -0.02 -0.40 16 40 H 0.20 -1.48 8.06 -2.91 -0.02 -1.50 16 41 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 42 H 0.43 -2.78 8.78 -92.71 -0.81 -3.59 16 43 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 45 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 46 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.14 0.95 8.06 -2.92 -0.02 0.92 16 Total: 0.00 -31.27 397.75 -1.96 -33.24 By element: Atomic # 1 Polarization: -19.56 SS G_CDS: -1.10 Total: -20.66 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 5.34 Total: 10.78 kcal Atomic # 7 Polarization: 4.26 SS G_CDS: -5.61 Total: -1.34 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -1.63 Total: -17.61 kcal Atomic # 14 Polarization: -4.20 SS G_CDS: 2.15 Total: -2.05 kcal Atomic # 16 Polarization: -1.24 SS G_CDS: -1.12 Total: -2.36 kcal Total: -31.27 -1.96 -33.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_6739946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.976 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds