Wall clock time and date at job start Sat Mar 6 2021 20:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47341 * 2 1 4 4 C 1.50701 * 109.46882 * 240.00227 * 2 1 3 5 5 C 1.32778 * 124.71172 * 299.72585 * 4 2 1 6 6 C 1.44418 * 113.08213 * 179.85233 * 5 4 2 7 7 C 1.47195 * 123.46260 * 180.19516 * 6 5 4 8 8 O 1.21637 * 119.99386 * 0.22994 * 7 6 5 9 9 N 1.34777 * 120.00451 * 180.22736 * 7 6 5 10 10 C 1.46498 * 119.99749 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47638 * 35.00346 * 10 9 7 12 12 C 1.53006 * 109.46401 * 155.00180 * 10 9 7 13 13 C 1.53010 * 109.46773 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47209 * 300.00498 * 13 12 10 15 15 H 1.08996 * 109.46564 * 299.99468 * 14 13 12 16 16 C 1.50703 * 109.46900 * 180.02562 * 14 13 12 17 17 N 1.30632 * 119.25070 * 334.99484 * 16 14 13 18 18 C 1.33521 * 121.50550 * 179.97438 * 17 16 14 19 19 C 1.36204 * 119.90889 * 359.97438 * 18 17 16 20 20 C 1.41028 * 118.58917 * 0.02562 * 19 18 17 21 21 O 1.21981 * 120.70523 * 180.02562 * 20 19 18 22 22 N 1.34747 * 119.25381 * 154.72510 * 16 14 13 23 23 C 1.52995 * 109.47505 * 59.99709 * 14 13 12 24 24 C 1.52997 * 109.47310 * 275.00098 * 10 9 7 25 25 C 1.36006 * 113.08329 * 0.42610 * 6 5 4 26 26 S 1.70458 * 110.81347 * 359.77159 * 25 6 5 27 27 H 0.96702 * 113.99767 * 300.00194 * 1 2 3 28 28 H 1.09004 * 109.46985 * 120.00760 * 2 1 3 29 29 H 1.48501 * 109.99832 * 178.68108 * 3 2 1 30 30 H 1.48498 * 109.99998 * 300.00426 * 3 2 1 31 31 H 1.08002 * 123.45438 * 0.02562 * 5 4 2 32 32 H 0.96996 * 119.99833 * 0.02562 * 9 7 6 33 33 H 1.08991 * 109.47379 * 299.99908 * 12 10 9 34 34 H 1.09002 * 109.47019 * 60.00199 * 12 10 9 35 35 H 1.09004 * 109.46656 * 59.99995 * 13 12 10 36 36 H 1.09000 * 109.47074 * 180.02562 * 13 12 10 37 37 H 1.08000 * 120.04916 * 179.97438 * 18 17 16 38 38 H 1.07999 * 120.70494 * 180.02562 * 19 18 17 39 39 H 0.97000 * 120.04170 * 359.97438 * 22 16 14 40 40 H 1.09002 * 109.46822 * 59.99887 * 23 14 13 41 41 H 1.08991 * 109.47224 * 179.97438 * 23 14 13 42 42 H 1.09010 * 109.46738 * 300.00356 * 24 10 9 43 43 H 1.08999 * 109.46958 * 59.99870 * 24 10 9 44 44 H 1.07998 * 124.59729 * 179.73536 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6730 -1.9778 -1.5302 6 6 2.2778 -2.4006 -2.7717 7 6 2.1354 -3.7581 -3.3229 8 8 1.4771 -4.5900 -2.7279 9 7 2.7345 -4.0791 -4.4867 10 6 2.5923 -5.4300 -5.0354 11 1 1.5966 -5.8112 -4.8090 12 6 2.7894 -5.3875 -6.5522 13 6 2.6415 -6.7985 -7.1253 14 6 3.6939 -7.7161 -6.4996 15 1 4.6894 -7.3344 -6.7261 16 6 3.5485 -9.1056 -7.0646 17 7 2.3907 -9.4854 -7.5352 18 6 2.2116 -10.7058 -8.0466 19 6 3.2511 -11.5851 -8.0853 20 6 4.5011 -11.1751 -7.5773 21 8 5.4582 -11.9312 -7.5932 22 7 4.6173 -9.9261 -7.0779 23 6 3.4968 -7.7584 -4.9830 24 6 3.6443 -6.3480 -4.4099 25 6 2.9965 -1.4173 -3.3768 26 16 2.9450 0.0206 -2.4627 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5140 0.8899 29 1 3.5347 1.7702 0.0321 30 1 1.5615 2.4679 -1.2084 31 1 1.0701 -2.6252 -0.9107 32 1 3.2598 -3.4158 -4.9609 33 1 2.0399 -4.7336 -6.9978 34 1 3.7851 -5.0063 -6.7786 35 1 1.6459 -7.1801 -6.8988 36 1 2.7824 -6.7684 -8.2057 37 1 1.2439 -10.9953 -8.4289 38 1 3.1207 -12.5752 -8.4965 39 1 5.4684 -9.6207 -6.7268 40 1 2.5012 -8.1400 -4.7565 41 1 4.2462 -8.4124 -4.5373 42 1 4.6401 -5.9666 -4.6364 43 1 3.5039 -6.3781 -3.3294 44 1 3.5283 -1.5319 -4.3097 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13456076_6894386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:00:20 Heat of formation + Delta-G solvation = -33.564075 kcal Electronic energy + Delta-G solvation = -28908.080057 eV Core-core repulsion = 24725.608230 eV Total energy + Delta-G solvation = -4182.471827 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.86711 -41.25536 -39.79619 -38.76504 -38.30111 -37.15637 -35.88407 -35.15304 -32.80682 -32.08460 -31.78827 -30.10679 -27.00623 -26.37785 -25.54537 -24.88153 -23.94859 -22.77937 -21.76422 -21.22540 -20.32036 -19.75426 -19.12975 -18.82235 -18.46666 -18.08239 -17.81119 -17.15658 -16.97424 -16.37942 -16.13126 -15.99396 -15.72030 -15.58240 -15.37973 -15.27489 -14.96815 -14.47300 -14.35075 -14.16292 -14.08540 -13.89828 -13.83665 -13.73542 -13.53700 -13.31098 -12.71508 -12.67094 -12.49857 -12.36200 -12.28466 -12.12288 -12.05592 -11.80030 -11.49837 -11.20728 -11.11708 -10.89484 -10.55740 -10.17594 -9.98102 -9.56633 -9.54932 -5.34216 -0.47273 -0.40760 0.31913 0.67526 0.78454 0.87319 1.10592 1.47910 1.55574 1.79151 2.02240 2.33841 2.54624 2.67031 3.22102 3.25474 3.40288 3.50589 3.58264 3.60137 3.75039 3.79032 3.92236 3.97060 3.99895 4.11039 4.16492 4.22588 4.23139 4.26684 4.31017 4.42418 4.51001 4.57989 4.67781 4.78769 4.83257 4.85740 4.92081 4.97485 5.02353 5.09221 5.18910 5.20883 5.38564 5.42693 5.43623 6.40240 6.48705 6.69445 6.79519 7.17868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.034 4.034 3 Si 0.670 3.330 4 C -0.198 4.198 5 C -0.049 4.049 6 C -0.155 4.155 7 C 0.581 3.419 8 O -0.528 6.528 9 N -0.724 5.724 10 C 0.144 3.856 11 H 0.095 0.905 12 C -0.128 4.128 13 C -0.095 4.095 14 C -0.046 4.046 15 H 0.101 0.899 16 C 0.403 3.597 17 N -0.532 5.532 18 C 0.156 3.844 19 C -0.293 4.293 20 C 0.520 3.480 21 O -0.537 6.537 22 N -0.627 5.627 23 C -0.108 4.108 24 C -0.127 4.127 25 C -0.203 4.203 26 S 0.174 5.826 27 H 0.385 0.615 28 H 0.085 0.915 29 H -0.238 1.238 30 H -0.234 1.234 31 H 0.159 0.841 32 H 0.398 0.602 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.171 0.829 38 H 0.157 0.843 39 H 0.417 0.583 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 7.928 1.599 8.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.147 4.147 3 Si 0.569 3.431 4 C -0.314 4.314 5 C -0.078 4.078 6 C -0.173 4.173 7 C 0.366 3.634 8 O -0.405 6.405 9 N -0.375 5.375 10 C 0.040 3.960 11 H 0.113 0.887 12 C -0.166 4.166 13 C -0.134 4.134 14 C -0.067 4.067 15 H 0.119 0.881 16 C 0.138 3.862 17 N -0.256 5.256 18 C 0.018 3.982 19 C -0.318 4.318 20 C 0.318 3.682 21 O -0.415 6.415 22 N -0.265 5.265 23 C -0.147 4.147 24 C -0.166 4.166 25 C -0.341 4.341 26 S 0.440 5.560 27 H 0.233 0.767 28 H 0.103 0.897 29 H -0.161 1.161 30 H -0.158 1.158 31 H 0.176 0.824 32 H 0.233 0.767 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.188 0.812 38 H 0.175 0.825 39 H 0.256 0.744 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.758 8.832 0.677 8.890 hybrid contribution 0.744 -2.193 -0.214 2.325 sum 1.503 6.639 0.463 6.823 Atomic orbital electron populations 1.86521 1.16721 1.81845 1.49815 1.23990 0.85979 1.09611 0.95162 0.94682 0.81910 0.78209 0.88298 1.23431 1.08231 0.97791 1.01956 1.21038 0.97720 0.94322 0.94714 1.20249 1.04408 0.94793 0.97849 1.17570 0.78852 0.86401 0.80549 1.90828 1.40034 1.50356 1.59311 1.45897 1.53726 1.14128 1.23766 1.21061 1.00810 0.81530 0.92618 0.88668 1.21862 1.03022 0.97946 0.93810 1.21368 0.99647 0.92269 1.00083 1.20559 1.02514 0.87085 0.96503 0.88118 1.23192 0.82478 0.92715 0.87809 1.68293 1.19695 1.18883 1.18715 1.22766 0.99416 0.87156 0.88851 1.22979 0.92783 1.04585 1.11408 1.17360 0.90934 0.80474 0.79423 1.91029 1.40971 1.51662 1.57848 1.44769 1.14559 1.14949 1.52267 1.21552 1.03922 0.97795 0.91480 1.21902 0.99345 0.93867 1.01461 1.25791 1.04625 0.98677 1.05000 1.83195 1.47156 1.12342 1.13293 0.76655 0.89724 1.16142 1.15763 0.82396 0.76709 0.90305 0.91129 0.89130 0.90566 0.81218 0.82510 0.74384 0.90079 0.91038 0.91278 0.90417 0.81049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.16 12.83 -35.23 -0.45 -0.29 16 2 C -0.03 0.03 2.94 36.01 0.11 0.13 16 3 Si 0.67 -1.37 30.91 -169.99 -5.25 -6.62 16 4 C -0.20 -0.30 5.72 -36.18 -0.21 -0.50 16 5 C -0.05 -0.12 9.91 -39.02 -0.39 -0.51 16 6 C -0.15 -0.25 5.98 -104.63 -0.63 -0.87 16 7 C 0.58 1.31 7.76 -12.62 -0.10 1.21 16 8 O -0.53 -3.17 16.46 5.24 0.09 -3.08 16 9 N -0.72 0.99 5.05 -54.95 -0.28 0.71 16 10 C 0.14 -0.27 2.45 -67.93 -0.17 -0.44 16 11 H 0.10 0.03 7.58 -51.93 -0.39 -0.36 16 12 C -0.13 0.51 5.39 -26.72 -0.14 0.37 16 13 C -0.10 0.33 4.67 -26.73 -0.12 0.20 16 14 C -0.05 0.17 2.48 -91.77 -0.23 -0.06 16 15 H 0.10 -0.56 8.14 -51.93 -0.42 -0.98 16 16 C 0.40 -0.52 6.73 -155.57 -1.05 -1.57 16 17 N -0.53 0.04 9.11 -10.63 -0.10 -0.06 16 18 C 0.16 -0.05 11.20 -17.55 -0.20 -0.24 16 19 C -0.29 -0.40 10.07 -39.26 -0.40 -0.79 16 20 C 0.52 1.70 7.75 -15.10 -0.12 1.58 16 21 O -0.54 -4.01 17.97 4.94 0.09 -3.92 16 22 N -0.63 0.25 5.25 -12.27 -0.06 0.19 16 23 C -0.11 0.32 5.19 -26.76 -0.14 0.18 16 24 C -0.13 0.30 5.49 -26.76 -0.15 0.15 16 25 C -0.20 0.14 10.38 29.93 0.31 0.45 16 26 S 0.17 0.05 20.18 -107.50 -2.17 -2.12 16 27 H 0.39 -2.11 8.74 45.56 0.40 -1.71 16 28 H 0.09 -0.21 7.96 -51.93 -0.41 -0.62 16 29 H -0.24 0.03 7.11 56.52 0.40 0.43 16 30 H -0.23 -0.20 7.11 56.52 0.40 0.21 16 31 H 0.16 0.48 8.06 -52.49 -0.42 0.05 16 32 H 0.40 -1.60 7.10 -40.82 -0.29 -1.89 16 33 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 34 H 0.07 -0.37 8.14 -51.93 -0.42 -0.79 16 35 H 0.09 -0.19 7.76 -51.93 -0.40 -0.59 16 36 H 0.08 -0.25 8.14 -51.93 -0.42 -0.68 16 37 H 0.17 -0.51 8.06 -52.49 -0.42 -0.94 16 38 H 0.16 0.07 8.06 -52.49 -0.42 -0.35 16 39 H 0.42 -1.09 8.78 -40.82 -0.36 -1.45 16 40 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 41 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 42 H 0.07 -0.24 8.14 -51.92 -0.42 -0.66 16 43 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 44 H 0.17 -0.70 7.01 -52.49 -0.37 -1.07 16 LS Contribution 380.31 15.07 5.73 5.73 Total: 0.00 -12.24 380.31 -11.69 -23.93 By element: Atomic # 1 Polarization: -8.09 SS G_CDS: -5.68 Total: -13.76 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -3.61 Total: -0.71 kcal Atomic # 7 Polarization: 1.28 SS G_CDS: -0.44 Total: 0.84 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.28 Total: -7.29 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: -5.25 Total: -6.62 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.17 Total: -2.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -12.24 -11.69 -23.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_6894386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.632 kcal (2) G-P(sol) polarization free energy of solvation -12.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds