Wall clock time and date at job start Sat Mar 6 2021 20:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47341 * 2 1 4 4 C 1.50701 * 109.46882 * 240.00227 * 2 1 3 5 5 C 1.32778 * 124.71172 * 299.72585 * 4 2 1 6 6 C 1.44418 * 113.08213 * 179.85233 * 5 4 2 7 7 C 1.47195 * 123.46260 * 180.19516 * 6 5 4 8 8 O 1.21637 * 119.99386 * 0.22994 * 7 6 5 9 9 N 1.34777 * 120.00451 * 180.22736 * 7 6 5 10 10 C 1.46498 * 119.99749 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47638 * 35.00346 * 10 9 7 12 12 C 1.53006 * 109.46401 * 155.00180 * 10 9 7 13 13 C 1.53010 * 109.46773 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47209 * 300.00498 * 13 12 10 15 15 H 1.08996 * 109.46564 * 299.99468 * 14 13 12 16 16 C 1.50703 * 109.46900 * 180.02562 * 14 13 12 17 17 N 1.30632 * 119.25070 * 334.99484 * 16 14 13 18 18 C 1.33521 * 121.50550 * 179.97438 * 17 16 14 19 19 C 1.36204 * 119.90889 * 359.97438 * 18 17 16 20 20 C 1.41028 * 118.58917 * 0.02562 * 19 18 17 21 21 O 1.21981 * 120.70523 * 180.02562 * 20 19 18 22 22 N 1.34747 * 119.25381 * 154.72510 * 16 14 13 23 23 C 1.52995 * 109.47505 * 59.99709 * 14 13 12 24 24 C 1.52997 * 109.47310 * 275.00098 * 10 9 7 25 25 C 1.36006 * 113.08329 * 0.42610 * 6 5 4 26 26 S 1.70458 * 110.81347 * 359.77159 * 25 6 5 27 27 H 0.96702 * 113.99767 * 300.00194 * 1 2 3 28 28 H 1.09004 * 109.46985 * 120.00760 * 2 1 3 29 29 H 1.48501 * 109.99832 * 178.68108 * 3 2 1 30 30 H 1.48498 * 109.99998 * 300.00426 * 3 2 1 31 31 H 1.08002 * 123.45438 * 0.02562 * 5 4 2 32 32 H 0.96996 * 119.99833 * 0.02562 * 9 7 6 33 33 H 1.08991 * 109.47379 * 299.99908 * 12 10 9 34 34 H 1.09002 * 109.47019 * 60.00199 * 12 10 9 35 35 H 1.09004 * 109.46656 * 59.99995 * 13 12 10 36 36 H 1.09000 * 109.47074 * 180.02562 * 13 12 10 37 37 H 1.08000 * 120.04916 * 179.97438 * 18 17 16 38 38 H 1.07999 * 120.70494 * 180.02562 * 19 18 17 39 39 H 0.97000 * 120.04170 * 359.97438 * 22 16 14 40 40 H 1.09002 * 109.46822 * 59.99887 * 23 14 13 41 41 H 1.08991 * 109.47224 * 179.97438 * 23 14 13 42 42 H 1.09010 * 109.46738 * 300.00356 * 24 10 9 43 43 H 1.08999 * 109.46958 * 59.99870 * 24 10 9 44 44 H 1.07998 * 124.59729 * 179.73536 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6730 -1.9778 -1.5302 6 6 2.2778 -2.4006 -2.7717 7 6 2.1354 -3.7581 -3.3229 8 8 1.4771 -4.5900 -2.7279 9 7 2.7345 -4.0791 -4.4867 10 6 2.5923 -5.4300 -5.0354 11 1 1.5966 -5.8112 -4.8090 12 6 2.7894 -5.3875 -6.5522 13 6 2.6415 -6.7985 -7.1253 14 6 3.6939 -7.7161 -6.4996 15 1 4.6894 -7.3344 -6.7261 16 6 3.5485 -9.1056 -7.0646 17 7 2.3907 -9.4854 -7.5352 18 6 2.2116 -10.7058 -8.0466 19 6 3.2511 -11.5851 -8.0853 20 6 4.5011 -11.1751 -7.5773 21 8 5.4582 -11.9312 -7.5932 22 7 4.6173 -9.9261 -7.0779 23 6 3.4968 -7.7584 -4.9830 24 6 3.6443 -6.3480 -4.4099 25 6 2.9965 -1.4173 -3.3768 26 16 2.9450 0.0206 -2.4627 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5140 0.8899 29 1 3.5347 1.7702 0.0321 30 1 1.5615 2.4679 -1.2084 31 1 1.0701 -2.6252 -0.9107 32 1 3.2598 -3.4158 -4.9609 33 1 2.0399 -4.7336 -6.9978 34 1 3.7851 -5.0063 -6.7786 35 1 1.6459 -7.1801 -6.8988 36 1 2.7824 -6.7684 -8.2057 37 1 1.2439 -10.9953 -8.4289 38 1 3.1207 -12.5752 -8.4965 39 1 5.4684 -9.6207 -6.7268 40 1 2.5012 -8.1400 -4.7565 41 1 4.2462 -8.4124 -4.5373 42 1 4.6401 -5.9666 -4.6364 43 1 3.5039 -6.3781 -3.3294 44 1 3.5283 -1.5319 -4.3097 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_6894386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:00:19 Heat of formation + Delta-G solvation = -37.703588 kcal Electronic energy + Delta-G solvation = -28908.259560 eV Core-core repulsion = 24725.608230 eV Total energy + Delta-G solvation = -4182.651329 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.113 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.91320 -41.30544 -39.78940 -38.83631 -38.36547 -37.16618 -35.90394 -35.20521 -32.83003 -31.92823 -31.73968 -30.05136 -27.00058 -26.37485 -25.58614 -24.89190 -23.75259 -22.71671 -21.79848 -21.09784 -20.33134 -19.78172 -19.18523 -18.78612 -18.39409 -18.15182 -17.81983 -17.13214 -17.05244 -16.38881 -16.14775 -16.02107 -15.71850 -15.62741 -15.27096 -15.16452 -14.97515 -14.47683 -14.32550 -14.11900 -14.04661 -13.89228 -13.88352 -13.76606 -13.41614 -13.17651 -12.68202 -12.57243 -12.38759 -12.30078 -12.14172 -12.10791 -12.04901 -11.62322 -11.40703 -11.35193 -11.11172 -11.03597 -10.49489 -10.19135 -9.98418 -9.68208 -9.58600 -5.19101 -0.46948 -0.42808 0.29311 0.64387 0.66580 0.76531 1.20343 1.54486 1.60033 1.88927 2.05492 2.22279 2.48870 2.76547 3.33954 3.40387 3.55584 3.61776 3.69725 3.70330 3.85352 3.93243 3.98926 4.13668 4.15763 4.21646 4.27823 4.33468 4.38559 4.42540 4.48369 4.49986 4.61442 4.65195 4.80812 4.87188 4.91947 4.99349 5.04842 5.09231 5.14995 5.20258 5.29310 5.33866 5.38684 5.45869 5.54080 6.45556 6.65402 6.69695 6.83861 7.13590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.050 4.050 3 Si 0.757 3.243 4 C -0.212 4.212 5 C -0.072 4.072 6 C -0.178 4.178 7 C 0.578 3.422 8 O -0.579 6.579 9 N -0.706 5.706 10 C 0.142 3.858 11 H 0.066 0.934 12 C -0.117 4.117 13 C -0.092 4.092 14 C -0.039 4.039 15 H 0.133 0.867 16 C 0.409 3.591 17 N -0.545 5.545 18 C 0.173 3.827 19 C -0.318 4.318 20 C 0.509 3.491 21 O -0.593 6.593 22 N -0.615 5.615 23 C -0.103 4.103 24 C -0.120 4.120 25 C -0.181 4.181 26 S 0.181 5.819 27 H 0.405 0.595 28 H 0.100 0.900 29 H -0.260 1.260 30 H -0.273 1.273 31 H 0.140 0.860 32 H 0.415 0.585 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.198 0.802 38 H 0.159 0.841 39 H 0.429 0.571 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.196 9.857 0.652 9.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.161 4.161 3 Si 0.659 3.341 4 C -0.329 4.329 5 C -0.101 4.101 6 C -0.196 4.196 7 C 0.364 3.636 8 O -0.460 6.460 9 N -0.357 5.357 10 C 0.038 3.962 11 H 0.084 0.916 12 C -0.155 4.155 13 C -0.131 4.131 14 C -0.059 4.059 15 H 0.151 0.849 16 C 0.145 3.855 17 N -0.268 5.268 18 C 0.033 3.967 19 C -0.343 4.343 20 C 0.310 3.690 21 O -0.476 6.476 22 N -0.252 5.252 23 C -0.143 4.143 24 C -0.159 4.159 25 C -0.319 4.319 26 S 0.446 5.554 27 H 0.257 0.743 28 H 0.118 0.882 29 H -0.186 1.186 30 H -0.199 1.199 31 H 0.158 0.842 32 H 0.252 0.748 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.215 0.785 38 H 0.177 0.823 39 H 0.269 0.731 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.657 10.804 -0.258 10.933 hybrid contribution 0.384 -2.689 0.093 2.717 sum 2.041 8.115 -0.166 8.369 Atomic orbital electron populations 1.86469 1.17054 1.82526 1.51442 1.24314 0.85971 1.10950 0.94908 0.93601 0.79140 0.75287 0.86085 1.23799 1.08281 0.97748 1.03028 1.21061 0.98612 0.94827 0.95585 1.20214 1.06012 0.95148 0.98229 1.17758 0.78468 0.86251 0.81077 1.90799 1.42492 1.51717 1.60945 1.45775 1.52637 1.14764 1.22512 1.21106 0.99588 0.81164 0.94341 0.91595 1.21797 1.04617 0.97658 0.91444 1.21329 0.98794 0.92480 1.00472 1.20671 1.04267 0.85540 0.95462 0.84892 1.23699 0.81813 0.93246 0.86743 1.68387 1.20246 1.19031 1.19123 1.23179 0.99951 0.86481 0.87070 1.23008 0.92737 1.05421 1.13091 1.17658 0.90918 0.81034 0.79414 1.90989 1.42612 1.53394 1.60592 1.44625 1.15438 1.13983 1.51168 1.21479 1.03153 0.97519 0.92117 1.21819 1.00240 0.94130 0.99695 1.26141 1.02950 0.97241 1.05528 1.83199 1.46594 1.12562 1.13001 0.74274 0.88231 1.18553 1.19885 0.84194 0.74777 0.90116 0.88481 0.90802 0.89836 0.78536 0.82345 0.73068 0.91928 0.90341 0.88993 0.93169 0.77346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.01 12.83 -148.98 -1.91 -1.92 16 2 C -0.05 0.06 2.94 71.24 0.21 0.27 16 3 Si 0.76 -3.26 30.91 68.60 2.12 -1.14 16 4 C -0.21 -0.81 5.72 24.51 0.14 -0.67 16 5 C -0.07 -0.50 9.91 22.67 0.22 -0.27 16 6 C -0.18 -0.70 5.98 -19.87 -0.12 -0.82 16 7 C 0.58 3.28 7.76 86.60 0.67 3.95 16 8 O -0.58 -8.58 16.46 -4.15 -0.07 -8.65 16 9 N -0.71 2.30 5.05 -446.02 -2.25 0.05 16 10 C 0.14 -0.57 2.45 44.99 0.11 -0.46 16 11 H 0.07 0.16 7.58 -2.39 -0.02 0.14 16 12 C -0.12 1.18 5.39 30.60 0.17 1.34 16 13 C -0.09 0.77 4.67 30.60 0.14 0.92 16 14 C -0.04 0.35 2.48 -11.54 -0.03 0.33 16 15 H 0.13 -1.96 8.14 -2.39 -0.02 -1.98 16 16 C 0.41 -1.40 6.73 138.18 0.93 -0.47 16 17 N -0.54 0.41 9.11 -187.56 -1.71 -1.30 16 18 C 0.17 -0.17 11.20 83.96 0.94 0.77 16 19 C -0.32 -1.11 10.07 22.48 0.23 -0.88 16 20 C 0.51 3.88 7.75 84.89 0.66 4.54 16 21 O -0.59 -10.08 17.97 -5.25 -0.09 -10.17 16 22 N -0.61 0.61 5.25 -310.70 -1.63 -1.02 16 23 C -0.10 0.65 5.19 30.58 0.16 0.81 16 24 C -0.12 0.61 5.49 30.58 0.17 0.78 16 25 C -0.18 0.44 10.38 67.30 0.70 1.14 16 26 S 0.18 0.03 20.18 -56.49 -1.14 -1.11 16 27 H 0.41 -4.42 8.74 -74.06 -0.65 -5.07 16 28 H 0.10 -0.47 7.96 -2.39 -0.02 -0.49 16 29 H -0.26 0.17 7.11 99.48 0.71 0.88 16 30 H -0.27 -0.56 7.11 99.48 0.71 0.15 16 31 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.41 -4.24 7.10 -92.71 -0.66 -4.90 16 33 H 0.08 -0.76 8.14 -2.39 -0.02 -0.78 16 34 H 0.10 -1.41 8.14 -2.39 -0.02 -1.43 16 35 H 0.07 -0.33 7.76 -2.39 -0.02 -0.35 16 36 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 37 H 0.20 -1.42 8.06 -2.91 -0.02 -1.44 16 38 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 39 H 0.43 -2.48 8.78 -92.71 -0.81 -3.30 16 40 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 42 H 0.09 -0.86 8.14 -2.38 -0.02 -0.88 16 43 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.21 -2.34 7.01 -2.91 -0.02 -2.36 16 Total: 0.00 -33.22 380.31 -2.40 -35.62 By element: Atomic # 1 Polarization: -20.61 SS G_CDS: -1.01 Total: -21.62 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.30 Total: 11.26 kcal Atomic # 7 Polarization: 3.33 SS G_CDS: -5.59 Total: -2.27 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -2.07 Total: -20.74 kcal Atomic # 14 Polarization: -3.26 SS G_CDS: 2.12 Total: -1.14 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.14 Total: -1.11 kcal Total: -33.22 -2.40 -35.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_6894386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.085 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds