Wall clock time and date at job start Sat Mar 6 2021 20:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37941 * 120.07711 * 2 1 4 4 C 1.38380 * 120.14818 * 179.70500 * 3 2 1 5 5 C 1.50693 * 119.85548 * 180.27745 * 4 3 2 6 6 C 1.38345 * 120.28917 * 0.25399 * 4 3 2 7 7 C 1.50700 * 119.92502 * 180.02562 * 6 4 3 8 8 O 1.42901 * 109.46944 * 285.00307 * 7 6 4 9 9 Si 1.86292 * 109.47307 * 164.99886 * 7 6 4 10 10 C 1.37973 * 120.14659 * 359.97438 * 6 4 3 11 11 C 1.39554 * 119.85572 * 0.02562 * 10 6 4 12 12 C 1.47844 * 120.14809 * 180.02562 * 11 10 6 13 13 O 1.21552 * 120.00048 * 186.16683 * 12 11 10 14 14 N 1.34773 * 119.99955 * 6.16351 * 12 11 10 15 15 C 1.46501 * 120.00251 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47184 * 34.99874 * 15 14 12 17 17 C 1.52998 * 109.47027 * 155.00171 * 15 14 12 18 18 C 1.53006 * 109.46912 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46760 * 299.99700 * 18 17 15 20 20 H 1.09004 * 109.47100 * 299.99669 * 19 18 17 21 21 C 1.50700 * 109.47099 * 180.02562 * 19 18 17 22 22 N 1.30642 * 119.25330 * 335.00250 * 21 19 18 23 23 C 1.33526 * 121.50797 * 179.97438 * 22 21 19 24 24 C 1.36197 * 119.90594 * 359.97438 * 23 22 21 25 25 C 1.41030 * 118.59541 * 0.02562 * 24 23 22 26 26 O 1.21986 * 120.70540 * 179.97438 * 25 24 23 27 27 N 1.34746 * 119.25708 * 154.72817 * 21 19 18 28 28 C 1.52997 * 109.47049 * 60.00078 * 19 18 17 29 29 C 1.52997 * 109.47433 * 299.99689 * 28 19 18 30 30 H 1.08995 * 109.47176 * 96.80089 * 1 2 3 31 31 H 1.09001 * 109.46997 * 216.80391 * 1 2 3 32 32 H 1.09001 * 109.46734 * 336.79653 * 1 2 3 33 33 H 1.07996 * 119.92179 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.47528 * 90.00047 * 5 4 3 35 35 H 1.08997 * 109.47313 * 210.00267 * 5 4 3 36 36 H 1.09009 * 109.46937 * 329.99875 * 5 4 3 37 37 H 1.09001 * 109.46949 * 44.99887 * 7 6 4 38 38 H 0.96701 * 113.99902 * 299.99314 * 8 7 6 39 39 H 1.48499 * 110.00414 * 179.97438 * 9 7 6 40 40 H 1.48503 * 110.00280 * 301.32288 * 9 7 6 41 41 H 1.08002 * 120.07363 * 180.02562 * 10 6 4 42 42 H 0.97007 * 119.99693 * 0.02562 * 14 12 11 43 43 H 1.08998 * 109.47367 * 299.99650 * 17 15 14 44 44 H 1.09004 * 109.47754 * 60.00046 * 17 15 14 45 45 H 1.08999 * 109.47412 * 59.99634 * 18 17 15 46 46 H 1.08999 * 109.47082 * 180.02562 * 18 17 15 47 47 H 1.07995 * 120.04715 * 180.02562 * 23 22 21 48 48 H 1.07997 * 120.70438 * 180.02562 * 24 23 22 49 49 H 0.97002 * 120.03654 * 0.02562 * 27 21 19 50 50 H 1.08999 * 109.47131 * 60.00060 * 28 19 18 51 51 H 1.09003 * 109.46734 * 179.97438 * 28 19 18 52 52 H 1.09004 * 109.46897 * 300.00520 * 29 28 19 53 53 H 1.08999 * 109.47239 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1937 0.0000 4 6 3.5821 1.1954 0.0062 5 6 4.3306 2.5033 0.0124 6 6 4.2813 0.0017 0.0071 7 6 5.7883 0.0131 0.0144 8 8 6.2682 0.3682 -1.2840 9 14 6.4200 -1.6795 0.4685 10 6 3.6021 -1.1993 0.0023 11 6 2.2066 -1.2081 -0.0039 12 6 1.4722 -2.4912 -0.0084 13 8 0.2625 -2.4987 -0.1269 14 7 2.1440 -3.6526 0.1188 15 6 1.4164 -4.9242 0.1138 16 1 0.5677 -4.8545 -0.5666 17 6 2.3503 -6.0443 -0.3487 18 6 1.5902 -7.3722 -0.3545 19 6 1.0872 -7.6780 1.0577 20 1 1.9357 -7.7481 1.7384 21 6 0.3391 -8.9862 1.0521 22 7 -0.2087 -9.4037 -0.0580 23 6 -0.8813 -10.5558 -0.1141 24 6 -1.0068 -11.3239 1.0036 25 6 -0.4156 -10.8734 2.2021 26 8 -0.5046 -11.5306 3.2260 27 7 0.2549 -9.7015 2.1909 28 6 0.1534 -6.5578 1.5202 29 6 0.9134 -5.2300 1.5260 30 1 -0.3633 -0.1217 -1.0204 31 1 -0.3633 -0.8229 0.6157 32 1 -0.3633 0.9446 0.4049 33 1 1.6583 2.1289 -0.0004 34 1 4.5065 2.8163 1.0416 35 1 5.2857 2.3777 -0.4974 36 1 3.7409 3.2619 -0.5024 37 1 6.1425 0.7411 0.7443 38 1 5.9909 -0.2374 -1.9850 39 1 7.9049 -1.6817 0.4787 40 1 5.9019 -2.0739 1.8032 41 1 4.1491 -2.1305 0.0035 42 1 3.1094 -3.6466 0.2137 43 1 2.7083 -5.8267 -1.3549 44 1 3.1990 -6.1141 0.3317 45 1 0.7417 -7.3022 -1.0352 46 1 2.2556 -8.1703 -0.6836 47 1 -1.3244 -10.8785 -1.0445 48 1 -1.5476 -12.2582 0.9728 49 1 0.6728 -9.3733 3.0025 50 1 -0.6951 -6.4879 0.8395 51 1 -0.2053 -6.7760 2.5261 52 1 1.7619 -5.3001 2.2067 53 1 0.2480 -4.4319 1.8551 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_9599494.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:00:28 Heat of formation + Delta-G solvation = -48.341902 kcal Electronic energy + Delta-G solvation = -35345.620912 eV Core-core repulsion = 30762.280787 eV Total energy + Delta-G solvation = -4583.340126 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.188 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.87599 -41.69848 -40.40515 -39.46227 -38.47364 -37.55464 -35.90785 -35.24281 -34.35061 -33.51998 -32.34504 -31.73343 -30.30996 -29.12743 -28.37821 -25.91067 -25.55446 -25.22389 -23.74895 -23.59369 -23.04745 -21.78690 -21.27455 -20.58216 -19.74845 -19.19134 -18.87391 -17.81075 -17.60689 -17.42467 -17.05285 -16.60288 -16.39547 -16.21963 -16.07773 -15.87930 -15.65228 -15.56962 -15.20343 -15.12143 -14.84669 -14.67105 -14.47283 -14.40176 -14.13824 -14.03366 -13.95093 -13.86209 -13.39014 -13.35232 -13.10486 -13.04414 -12.81386 -12.62584 -12.48818 -12.38357 -12.25750 -12.11585 -12.06536 -11.99370 -11.84902 -11.54757 -11.34793 -11.25354 -11.05665 -10.62215 -10.38558 -10.08639 -9.86531 -9.65009 -9.57046 -5.02978 -0.43366 -0.21574 0.20041 0.69735 1.31901 1.58086 1.65648 1.81068 2.01086 2.13937 2.52192 2.69088 2.80899 3.43916 3.49485 3.55327 3.60701 3.65101 3.72665 3.76414 3.77221 3.84181 4.04325 4.17042 4.20256 4.22139 4.27233 4.33093 4.42311 4.45442 4.49483 4.53016 4.53636 4.57462 4.58723 4.69658 4.71511 4.75067 4.82363 4.89033 4.90670 4.92549 5.05640 5.07552 5.13193 5.17454 5.22150 5.26456 5.29882 5.37304 5.39135 5.46733 5.49762 5.51413 5.55527 5.64599 5.82645 6.56639 6.68261 6.73103 6.80005 7.25324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.027 4.027 3 C -0.139 4.139 4 C -0.034 4.034 5 C -0.127 4.127 6 C -0.140 4.140 7 C -0.073 4.073 8 O -0.551 6.551 9 Si 0.768 3.232 10 C -0.062 4.062 11 C -0.157 4.157 12 C 0.558 3.442 13 O -0.562 6.562 14 N -0.711 5.711 15 C 0.143 3.857 16 H 0.071 0.929 17 C -0.120 4.120 18 C -0.092 4.092 19 C -0.041 4.041 20 H 0.131 0.869 21 C 0.409 3.591 22 N -0.543 5.543 23 C 0.174 3.826 24 C -0.320 4.320 25 C 0.509 3.491 26 O -0.594 6.594 27 N -0.615 5.615 28 C -0.103 4.103 29 C -0.122 4.122 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.140 0.860 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.395 0.605 39 H -0.299 1.299 40 H -0.275 1.275 41 H 0.157 0.843 42 H 0.413 0.587 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.198 0.802 48 H 0.158 0.842 49 H 0.428 0.572 50 H 0.063 0.937 51 H 0.074 0.926 52 H 0.088 0.912 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.386 2.317 -3.789 6.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.029 4.029 3 C -0.157 4.157 4 C -0.035 4.035 5 C -0.183 4.183 6 C -0.140 4.140 7 C -0.183 4.183 8 O -0.359 6.359 9 Si 0.673 3.327 10 C -0.080 4.080 11 C -0.160 4.160 12 C 0.347 3.653 13 O -0.442 6.442 14 N -0.363 5.363 15 C 0.039 3.961 16 H 0.089 0.911 17 C -0.158 4.158 18 C -0.131 4.131 19 C -0.061 4.061 20 H 0.149 0.851 21 C 0.145 3.855 22 N -0.266 5.266 23 C 0.034 3.966 24 C -0.344 4.344 25 C 0.309 3.691 26 O -0.477 6.477 27 N -0.253 5.253 28 C -0.142 4.142 29 C -0.161 4.161 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.245 0.755 39 H -0.227 1.227 40 H -0.202 1.202 41 H 0.174 0.826 42 H 0.251 0.749 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.215 0.785 48 H 0.175 0.825 49 H 0.269 0.731 50 H 0.082 0.918 51 H 0.093 0.907 52 H 0.107 0.893 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.091 2.118 -3.241 6.396 hybrid contribution -0.169 0.243 1.476 1.505 sum 4.922 2.361 -1.766 5.737 Atomic orbital electron populations 1.21000 0.90237 1.02992 1.03083 1.20219 0.96901 0.92102 0.93632 1.21168 0.93717 0.98028 1.02793 1.20215 0.93452 0.95969 0.93843 1.20998 1.00970 0.93267 1.03110 1.20200 0.96563 0.92834 1.04408 1.25190 0.91008 1.12740 0.89356 1.86479 1.75878 1.56872 1.16720 0.94167 0.77441 0.78086 0.82969 1.21190 0.92330 0.97861 0.96613 1.19727 0.93821 0.92960 1.09492 1.18350 0.86752 0.84392 0.75844 1.90749 1.15161 1.87491 1.50807 1.45896 1.11556 1.05037 1.73768 1.21081 0.95664 0.82348 0.96989 0.91109 1.21833 0.98132 0.92034 1.03811 1.21333 1.00991 0.97120 0.93625 1.20701 0.97580 0.85595 1.02206 0.85085 1.23762 0.88554 0.92580 0.80593 1.68397 1.16703 1.17688 1.23836 1.23180 0.87638 0.86663 0.99096 1.22996 1.11766 1.06867 0.92800 1.17668 0.79859 0.80686 0.90846 1.90989 1.63582 1.56854 1.36315 1.44637 1.45735 1.20185 1.14697 1.21481 0.97812 0.92851 1.02090 1.21844 1.00761 0.96125 0.97339 0.91167 0.90288 0.91256 0.84181 0.90266 0.90157 0.90563 0.87528 0.75493 1.22694 1.20150 0.82629 0.74950 0.89406 0.88524 0.90701 0.89907 0.78518 0.82465 0.73120 0.91795 0.90731 0.89347 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.41 8.71 71.24 0.62 0.21 16 2 C -0.03 -0.07 5.91 -19.61 -0.12 -0.19 16 3 C -0.14 -0.07 9.31 22.23 0.21 0.14 16 4 C -0.03 0.02 5.89 -19.81 -0.12 -0.10 16 5 C -0.13 0.31 9.31 71.23 0.66 0.97 16 6 C -0.14 0.41 5.26 -19.90 -0.10 0.30 16 7 C -0.07 0.32 1.88 71.24 0.13 0.45 16 8 O -0.55 2.07 11.92 -148.98 -1.78 0.29 16 9 Si 0.77 -5.45 29.91 68.60 2.05 -3.40 16 10 C -0.06 0.30 8.13 22.52 0.18 0.48 16 11 C -0.16 -0.05 5.87 -20.09 -0.12 -0.17 16 12 C 0.56 0.72 7.67 86.79 0.67 1.38 16 13 O -0.56 -4.78 13.02 -3.88 -0.05 -4.83 16 14 N -0.71 4.55 5.03 -445.42 -2.24 2.31 16 15 C 0.14 -1.00 2.45 44.99 0.11 -0.89 16 16 H 0.07 -0.10 7.58 -2.39 -0.02 -0.12 16 17 C -0.12 1.53 5.39 30.60 0.16 1.70 16 18 C -0.09 0.96 4.67 30.60 0.14 1.11 16 19 C -0.04 0.42 2.48 -11.54 -0.03 0.39 16 20 H 0.13 -2.06 8.14 -2.38 -0.02 -2.08 16 21 C 0.41 -1.85 6.73 138.18 0.93 -0.92 16 22 N -0.54 1.08 9.11 -187.56 -1.71 -0.63 16 23 C 0.17 -0.34 11.20 83.96 0.94 0.60 16 24 C -0.32 -0.91 10.07 22.48 0.23 -0.68 16 25 C 0.51 3.58 7.75 84.89 0.66 4.24 16 26 O -0.59 -9.87 17.97 -5.27 -0.09 -9.96 16 27 N -0.62 1.06 5.25 -310.68 -1.63 -0.57 16 28 C -0.10 0.81 5.19 30.59 0.16 0.97 16 29 C -0.12 0.86 5.50 30.59 0.17 1.03 16 30 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.08 0.56 5.90 -2.39 -0.01 0.55 16 32 H 0.07 0.04 8.04 -2.39 -0.02 0.03 16 33 H 0.14 -0.30 8.05 -2.91 -0.02 -0.32 16 34 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.08 -0.09 6.18 -2.39 -0.01 -0.10 16 36 H 0.08 -0.27 8.08 -2.38 -0.02 -0.29 16 37 H 0.11 -0.31 7.38 -2.39 -0.02 -0.33 16 38 H 0.40 -4.55 8.70 -74.06 -0.64 -5.20 16 39 H -0.30 -0.36 7.11 99.48 0.71 0.34 16 40 H -0.28 0.88 7.11 99.48 0.71 1.58 16 41 H 0.16 -1.88 3.52 -2.91 -0.01 -1.89 16 42 H 0.41 -5.24 6.68 -92.70 -0.62 -5.86 16 43 H 0.09 -1.16 8.14 -2.39 -0.02 -1.18 16 44 H 0.10 -1.63 8.14 -2.38 -0.02 -1.65 16 45 H 0.07 -0.50 7.76 -2.39 -0.02 -0.52 16 46 H 0.08 -0.90 8.14 -2.39 -0.02 -0.92 16 47 H 0.20 -1.62 8.06 -2.91 -0.02 -1.64 16 48 H 0.16 0.28 8.06 -2.91 -0.02 0.26 16 49 H 0.43 -2.72 8.78 -92.71 -0.81 -3.54 16 50 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 51 H 0.07 -0.62 8.14 -2.39 -0.02 -0.64 16 52 H 0.09 -0.94 8.14 -2.38 -0.02 -0.96 16 53 H 0.05 -0.06 8.14 -2.39 -0.02 -0.07 16 Total: 0.00 -29.56 419.96 -1.02 -30.58 By element: Atomic # 1 Polarization: -23.77 SS G_CDS: -1.06 Total: -24.83 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 5.49 Total: 11.04 kcal Atomic # 7 Polarization: 6.69 SS G_CDS: -5.58 Total: 1.11 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -1.92 Total: -14.51 kcal Atomic # 14 Polarization: -5.45 SS G_CDS: 2.05 Total: -3.40 kcal Total: -29.56 -1.02 -30.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_9599494.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.761 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds