Wall clock time and date at job start Sat Mar 6 2021 20:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.46913 * 2 1 4 4 C 1.50701 * 109.47534 * 239.99393 * 2 1 3 5 5 C 1.34231 * 126.49712 * 105.31583 * 4 2 1 6 6 N 1.36833 * 109.93643 * 180.17164 * 5 4 2 7 7 C 1.46501 * 125.06545 * 179.81281 * 6 5 4 8 8 C 1.50696 * 109.47368 * 264.69936 * 7 6 5 9 9 O 1.21281 * 119.99909 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00051 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99775 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47565 * 34.99894 * 11 10 8 13 13 C 1.52997 * 109.46953 * 154.99854 * 11 10 8 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46626 * 299.99539 * 14 13 11 16 16 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 17 17 C 1.50706 * 109.46957 * 180.02562 * 15 14 13 18 18 N 1.30637 * 119.24968 * 335.00073 * 17 15 14 19 19 C 1.33531 * 121.50593 * 179.97438 * 18 17 15 20 20 C 1.36203 * 119.90453 * 0.02562 * 19 18 17 21 21 C 1.41026 * 118.59625 * 0.02562 * 20 19 18 22 22 O 1.21981 * 120.70998 * 180.02562 * 21 20 19 23 23 N 1.34746 * 119.25621 * 154.73028 * 17 15 14 24 24 C 1.52997 * 109.46991 * 60.00378 * 15 14 13 25 25 C 1.52996 * 109.47131 * 299.99311 * 24 15 14 26 26 C 1.37689 * 109.87329 * 359.54688 * 6 5 4 27 27 C 1.39084 * 133.51568 * 180.23704 * 26 6 5 28 28 C 1.37793 * 119.78182 * 180.02562 * 27 26 6 29 29 C 1.38791 * 120.66191 * 0.02562 * 28 27 26 30 30 C 1.36658 * 120.53030 * 359.97438 * 29 28 27 31 31 C 1.39589 * 119.76356 * 0.02562 * 30 29 28 32 32 H 0.96698 * 114.00144 * 60.00425 * 1 2 3 33 33 H 1.09002 * 109.46642 * 119.99516 * 2 1 3 34 34 H 1.48504 * 109.99707 * 298.67552 * 3 2 1 35 35 H 1.48493 * 110.00114 * 59.99652 * 3 2 1 36 36 H 1.07998 * 125.03818 * 0.02562 * 5 4 2 37 37 H 1.08994 * 109.47152 * 144.69430 * 7 6 5 38 38 H 1.09005 * 109.46566 * 24.69983 * 7 6 5 39 39 H 0.97001 * 119.99650 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.47502 * 60.00124 * 13 11 10 41 41 H 1.09001 * 109.47289 * 299.99920 * 13 11 10 42 42 H 1.08993 * 109.46955 * 60.00011 * 14 13 11 43 43 H 1.09000 * 109.47050 * 179.97438 * 14 13 11 44 44 H 1.07997 * 120.04827 * 180.02562 * 19 18 17 45 45 H 1.07995 * 120.70335 * 180.02562 * 20 19 18 46 46 H 0.97001 * 120.04023 * 359.97438 * 23 17 15 47 47 H 1.09001 * 109.47289 * 179.97438 * 24 15 14 48 48 H 1.09000 * 109.47611 * 59.99933 * 24 15 14 49 49 H 1.08996 * 109.47452 * 300.00000 * 25 24 15 50 50 H 1.09000 * 109.47054 * 180.02562 * 25 24 15 51 51 H 1.08005 * 120.10998 * 0.05963 * 27 26 6 52 52 H 1.07991 * 119.66877 * 180.02562 * 28 27 26 53 53 H 1.07997 * 119.73015 * 180.02562 * 29 28 27 54 54 H 1.08004 * 120.12025 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.4663 -0.1382 -2.3204 6 7 2.8030 -1.0992 -3.2344 7 6 3.4078 -0.8407 -4.5434 8 6 2.3282 -0.7843 -5.5933 9 8 1.1678 -0.9447 -5.2791 10 7 2.6522 -0.5566 -6.8816 11 6 1.6027 -0.5023 -7.9022 12 1 0.7045 -0.0551 -7.4765 13 6 2.0830 0.3436 -9.0831 14 6 0.9872 0.3998 -10.1494 15 6 0.6723 -1.0175 -10.6321 16 1 1.5706 -1.4645 -11.0576 17 6 -0.4067 -0.9622 -11.6828 18 7 -1.2355 0.0475 -11.6942 19 6 -2.2076 0.1422 -12.6047 20 6 -2.3505 -0.8289 -13.5490 21 6 -1.4565 -1.9196 -13.5362 22 8 -1.5490 -2.8106 -14.3641 23 7 -0.4912 -1.9525 -12.5927 24 6 0.1919 -1.8635 -9.4512 25 6 1.2877 -1.9196 -8.3850 26 6 2.4941 -2.3458 -2.7381 27 6 2.6287 -3.6363 -3.2390 28 6 2.2147 -4.7109 -2.4823 29 6 1.6630 -4.5193 -1.2232 30 6 1.5214 -3.2600 -0.7116 31 6 1.9342 -2.1571 -1.4611 32 1 -0.3933 0.4416 -0.7651 33 1 1.7922 -0.5138 0.8901 34 1 1.5878 2.4585 -1.2243 35 1 1.5613 2.4679 1.2084 36 1 2.6077 0.9238 -2.4569 37 1 4.1077 -1.6406 -4.7846 38 1 3.9387 0.1109 -4.5167 39 1 3.5803 -0.4286 -7.1329 40 1 2.9812 -0.1036 -9.5090 41 1 2.3079 1.3532 -8.7392 42 1 0.0888 0.8468 -9.7239 43 1 1.3292 1.0028 -10.9905 44 1 -2.8795 0.9876 -12.5925 45 1 -3.1318 -0.7651 -14.2917 46 1 0.1381 -2.6903 -12.5673 47 1 -0.0329 -2.8731 -9.7951 48 1 -0.7066 -1.4165 -9.0257 49 1 2.1862 -2.3666 -8.8104 50 1 0.9457 -2.5227 -7.5439 51 1 3.0569 -3.7958 -4.2176 52 1 2.3204 -5.7121 -2.8728 53 1 1.3439 -5.3724 -0.6428 54 1 1.0909 -3.1186 0.2688 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_9818708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:00:31 Heat of formation + Delta-G solvation = 0.493470 kcal Electronic energy + Delta-G solvation = -38287.537216 eV Core-core repulsion = 33384.436559 eV Total energy + Delta-G solvation = -4903.100657 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 409.183 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.92361 -42.51322 -40.98009 -39.62024 -38.53950 -38.13719 -37.66669 -35.87996 -35.17585 -34.09357 -32.62386 -31.82781 -31.46049 -30.31361 -30.19761 -28.66896 -26.13149 -25.63405 -25.18696 -23.78394 -23.73109 -22.99755 -22.38385 -21.56018 -20.92693 -20.60752 -19.79823 -19.20314 -18.66641 -18.32963 -17.85677 -17.77721 -17.41063 -17.10195 -16.88957 -16.40833 -16.35447 -16.08214 -15.99072 -15.66623 -15.55784 -15.44798 -15.19291 -15.15224 -14.80013 -14.68416 -14.46562 -14.42868 -14.10780 -14.07523 -13.98127 -13.62968 -13.46152 -13.24384 -13.07183 -12.72337 -12.56531 -12.51251 -12.37891 -12.36032 -12.14296 -12.05836 -11.99385 -11.72903 -11.62179 -11.41247 -11.34487 -11.12298 -11.04522 -10.52694 -10.44695 -10.09108 -9.69631 -9.14121 -8.61259 -4.88665 -0.48253 0.15813 0.65183 0.65704 1.36029 1.44801 1.51993 1.53820 1.62413 1.72901 2.01134 2.25034 2.47464 2.75729 2.96491 3.38592 3.51428 3.53917 3.62003 3.67162 3.68350 3.72235 3.78202 3.87496 3.97143 4.06722 4.14488 4.15386 4.20263 4.23717 4.27220 4.32224 4.34400 4.38345 4.47374 4.49966 4.51393 4.60165 4.64739 4.73489 4.80702 4.81973 4.85854 4.91073 4.99572 5.05702 5.14685 5.15347 5.21368 5.29838 5.32684 5.41432 5.45367 5.52260 5.55656 5.67976 5.75275 5.76921 6.21415 6.26228 6.53677 6.56135 6.64181 6.68135 7.22084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.057 4.057 3 Si 0.787 3.213 4 C -0.217 4.217 5 C 0.076 3.924 6 N -0.465 5.465 7 C 0.086 3.914 8 C 0.490 3.510 9 O -0.573 6.573 10 N -0.707 5.707 11 C 0.145 3.855 12 H 0.059 0.941 13 C -0.116 4.116 14 C -0.094 4.094 15 C -0.038 4.038 16 H 0.134 0.866 17 C 0.408 3.592 18 N -0.545 5.545 19 C 0.172 3.828 20 C -0.319 4.319 21 C 0.509 3.491 22 O -0.593 6.593 23 N -0.615 5.615 24 C -0.105 4.105 25 C -0.119 4.119 26 C 0.093 3.907 27 C -0.132 4.132 28 C -0.108 4.108 29 C -0.155 4.155 30 C -0.089 4.089 31 C -0.116 4.116 32 H 0.381 0.619 33 H 0.108 0.892 34 H -0.272 1.272 35 H -0.305 1.305 36 H 0.197 0.803 37 H 0.145 0.855 38 H 0.164 0.836 39 H 0.422 0.578 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.197 0.803 45 H 0.158 0.842 46 H 0.429 0.571 47 H 0.075 0.925 48 H 0.057 0.943 49 H 0.094 0.906 50 H 0.046 0.954 51 H 0.135 0.865 52 H 0.145 0.855 53 H 0.134 0.866 54 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.910 4.710 -1.587 12.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.165 4.165 3 Si 0.691 3.309 4 C -0.225 4.225 5 C -0.050 4.050 6 N -0.147 5.147 7 C -0.039 4.039 8 C 0.276 3.724 9 O -0.452 6.452 10 N -0.360 5.360 11 C 0.040 3.960 12 H 0.077 0.923 13 C -0.153 4.153 14 C -0.132 4.132 15 C -0.058 4.058 16 H 0.152 0.848 17 C 0.144 3.856 18 N -0.268 5.268 19 C 0.033 3.967 20 C -0.343 4.343 21 C 0.310 3.690 22 O -0.475 6.475 23 N -0.252 5.252 24 C -0.144 4.144 25 C -0.157 4.157 26 C -0.013 4.013 27 C -0.152 4.152 28 C -0.127 4.127 29 C -0.174 4.174 30 C -0.108 4.108 31 C -0.120 4.120 32 H 0.230 0.770 33 H 0.126 0.874 34 H -0.198 1.198 35 H -0.233 1.233 36 H 0.214 0.786 37 H 0.163 0.837 38 H 0.182 0.818 39 H 0.260 0.740 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.214 0.786 45 H 0.176 0.824 46 H 0.269 0.731 47 H 0.093 0.907 48 H 0.076 0.924 49 H 0.112 0.888 50 H 0.065 0.935 51 H 0.153 0.847 52 H 0.162 0.838 53 H 0.152 0.848 54 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.864 5.430 -1.208 12.206 hybrid contribution -1.536 -1.420 -1.193 2.407 sum 9.328 4.011 -2.400 10.434 Atomic orbital electron populations 1.86554 1.19601 1.80590 1.49659 1.24726 0.82496 1.12113 0.97154 0.94204 0.89548 0.70419 0.76778 1.20699 1.10985 0.91910 0.98882 1.22005 0.99435 0.95101 0.88442 1.43423 1.53263 1.03712 1.14308 1.22031 0.93888 1.09249 0.78700 1.21451 0.90362 0.76002 0.84629 1.90812 1.22444 1.50055 1.81862 1.45868 1.11974 1.72312 1.05820 1.20981 0.90895 0.95917 0.88209 0.92291 1.21780 0.99321 1.00765 0.93475 1.21337 0.99546 0.93381 0.98985 1.20678 0.93847 1.00280 0.91044 0.84803 1.23758 0.93187 0.81741 0.86929 1.68390 1.08058 1.22889 1.27509 1.23175 0.91262 0.96606 0.85675 1.23007 1.06123 0.97449 1.07712 1.17656 0.82067 0.88285 0.81029 1.90990 1.74192 1.41974 1.40381 1.44627 1.29926 1.24238 1.26439 1.21489 0.98940 0.99792 0.94195 1.21805 0.99472 0.96840 0.97603 1.18380 1.01711 0.87039 0.94123 1.20241 1.04929 0.89034 1.01021 1.21124 0.98263 0.99073 0.94286 1.20906 1.02410 0.96993 0.97076 1.20440 0.99030 0.91767 0.99531 1.19339 1.03819 0.93768 0.95123 0.77043 0.87358 1.19829 1.23336 0.78607 0.83695 0.81809 0.74000 0.88307 0.89862 0.91137 0.89947 0.78584 0.82385 0.73056 0.90670 0.92410 0.88758 0.93549 0.84744 0.83774 0.84786 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.61 12.88 -148.98 -1.92 -6.53 16 2 C -0.06 -0.21 3.06 71.24 0.22 0.01 16 3 Si 0.79 -1.31 30.81 68.60 2.11 0.80 16 4 C -0.22 -1.07 5.58 -18.63 -0.10 -1.17 16 5 C 0.08 0.01 9.89 83.00 0.82 0.83 16 6 N -0.46 0.01 2.27 -520.01 -1.18 -1.17 16 7 C 0.09 -0.82 6.48 85.63 0.56 -0.27 16 8 C 0.49 -1.87 7.86 87.66 0.69 -1.18 16 9 O -0.57 -4.98 16.08 -3.03 -0.05 -5.03 16 10 N -0.71 7.76 5.08 -442.54 -2.25 5.51 16 11 C 0.14 -1.20 2.45 44.99 0.11 -1.09 16 12 H 0.06 -0.04 7.58 -2.39 -0.02 -0.06 16 13 C -0.12 1.57 5.39 30.60 0.16 1.73 16 14 C -0.09 0.98 4.67 30.60 0.14 1.12 16 15 C -0.04 0.40 2.48 -11.54 -0.03 0.37 16 16 H 0.13 -2.19 8.14 -2.39 -0.02 -2.21 16 17 C 0.41 -1.76 6.73 138.18 0.93 -0.83 16 18 N -0.55 0.82 9.11 -187.55 -1.71 -0.89 16 19 C 0.17 -0.26 11.20 83.96 0.94 0.68 16 20 C -0.32 -0.97 10.07 22.48 0.23 -0.74 16 21 C 0.51 3.60 7.75 84.89 0.66 4.26 16 22 O -0.59 -9.76 17.97 -5.25 -0.09 -9.86 16 23 N -0.61 1.07 5.25 -310.68 -1.63 -0.56 16 24 C -0.10 0.80 5.19 30.59 0.16 0.96 16 25 C -0.12 0.94 5.49 30.59 0.17 1.11 16 26 C 0.09 0.54 6.80 39.03 0.27 0.81 16 27 C -0.13 -0.50 10.00 22.37 0.22 -0.28 16 28 C -0.11 -0.43 10.01 22.30 0.22 -0.21 16 29 C -0.15 -0.95 9.97 22.03 0.22 -0.73 16 30 C -0.09 -0.81 10.05 22.23 0.22 -0.58 16 31 C -0.12 -1.05 6.35 -20.20 -0.13 -1.18 16 32 H 0.38 1.26 8.70 -74.06 -0.64 0.61 16 33 H 0.11 0.38 7.96 -2.39 -0.02 0.36 16 34 H -0.27 -0.04 7.00 99.48 0.70 0.65 16 35 H -0.31 -1.95 7.11 99.48 0.71 -1.24 16 36 H 0.20 -1.32 6.27 -2.91 -0.02 -1.33 16 37 H 0.15 -2.15 8.14 -2.39 -0.02 -2.17 16 38 H 0.16 -2.93 8.12 -2.38 -0.02 -2.95 16 39 H 0.42 -7.94 8.60 -92.71 -0.80 -8.74 16 40 H 0.10 -1.78 8.14 -2.39 -0.02 -1.80 16 41 H 0.08 -1.12 8.14 -2.39 -0.02 -1.14 16 42 H 0.07 -0.42 7.76 -2.39 -0.02 -0.44 16 43 H 0.08 -0.88 8.14 -2.39 -0.02 -0.90 16 44 H 0.20 -1.51 8.06 -2.91 -0.02 -1.53 16 45 H 0.16 0.30 8.06 -2.91 -0.02 0.28 16 46 H 0.43 -2.83 8.78 -92.71 -0.81 -3.65 16 47 H 0.07 -0.61 8.14 -2.39 -0.02 -0.63 16 48 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 49 H 0.09 -1.19 8.14 -2.39 -0.02 -1.21 16 50 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 51 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 52 H 0.14 -0.16 8.06 -2.92 -0.02 -0.18 16 53 H 0.13 0.31 8.06 -2.91 -0.02 0.29 16 54 H 0.12 0.98 8.06 -2.91 -0.02 0.96 16 Total: 0.00 -40.34 446.43 -1.30 -41.64 By element: Atomic # 1 Polarization: -26.27 SS G_CDS: -1.26 Total: -27.53 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 6.68 Total: 3.62 kcal Atomic # 7 Polarization: 9.65 SS G_CDS: -6.77 Total: 2.88 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -2.06 Total: -21.41 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: 2.11 Total: 0.80 kcal Total: -40.34 -1.30 -41.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_9818708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.131 kcal (2) G-P(sol) polarization free energy of solvation -40.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds