Wall clock time and date at job start Sat Mar 6 2021 20:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36773 * 125.80562 * 2 1 4 4 C 1.47261 * 126.93772 * 359.97438 * 3 2 1 5 5 O 1.21625 * 120.00462 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99709 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99928 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47336 * 325.00245 * 7 6 4 9 9 C 1.52999 * 109.47228 * 85.00430 * 7 6 4 10 10 C 1.52993 * 109.47433 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46968 * 299.99930 * 10 9 7 12 12 H 1.08999 * 109.46838 * 300.00065 * 11 10 9 13 13 C 1.50702 * 109.47281 * 179.97438 * 11 10 9 14 14 N 1.30634 * 119.25130 * 264.99868 * 13 11 10 15 15 C 1.33524 * 121.50344 * 179.97438 * 14 13 11 16 16 C 1.36196 * 119.90913 * 0.02562 * 15 14 13 17 17 C 1.41022 * 118.59563 * 359.97428 * 16 15 14 18 18 O 1.21978 * 120.71082 * 180.02562 * 17 16 15 19 19 N 1.34742 * 119.25283 * 84.97815 * 13 11 10 20 20 C 1.53003 * 109.47307 * 59.99662 * 11 10 9 21 21 C 1.52993 * 109.47228 * 300.00446 * 20 11 10 22 22 C 1.46682 * 106.11663 * 180.24784 * 3 2 1 23 23 C 1.34483 * 106.33454 * 359.62303 * 22 3 2 24 24 C 1.50708 * 125.57456 * 180.15952 * 23 22 3 25 25 O 1.42899 * 109.47046 * 300.28066 * 24 23 22 26 26 Si 1.86297 * 109.47214 * 180.27816 * 24 23 22 27 27 N 1.34660 * 125.80184 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47168 * 89.99685 * 1 2 3 29 29 H 1.08997 * 109.47467 * 210.00210 * 1 2 3 30 30 H 1.09007 * 109.47002 * 330.00210 * 1 2 3 31 31 H 0.96999 * 119.99849 * 0.02562 * 6 4 3 32 32 H 1.09006 * 109.46463 * 300.00190 * 9 7 6 33 33 H 1.08999 * 109.47113 * 59.99678 * 9 7 6 34 34 H 1.08998 * 109.47595 * 179.97438 * 10 9 7 35 35 H 1.09007 * 109.47239 * 59.99330 * 10 9 7 36 36 H 1.08000 * 120.04638 * 179.72271 * 15 14 13 37 37 H 1.08001 * 120.70726 * 179.97438 * 16 15 14 38 38 H 0.97001 * 120.04680 * 0.02562 * 19 13 11 39 39 H 1.09004 * 109.46522 * 60.00088 * 20 11 10 40 40 H 1.08994 * 109.47443 * 179.97438 * 20 11 10 41 41 H 1.08998 * 109.47441 * 179.97438 * 21 20 11 42 42 H 1.08999 * 109.47176 * 299.99756 * 21 20 11 43 43 H 1.08000 * 126.83328 * 179.75079 * 22 3 2 44 44 H 1.08999 * 109.46797 * 60.27613 * 24 23 22 45 45 H 0.96705 * 114.00183 * 180.02562 * 25 24 23 46 46 H 1.48505 * 109.99797 * 60.00248 * 26 24 23 47 47 H 1.48494 * 109.99974 * 181.32026 * 26 24 23 48 48 H 0.97001 * 124.85180 * 359.96079 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6840 2.7839 -0.0015 6 7 2.7851 3.5054 0.0001 7 6 2.3505 4.9044 -0.0010 8 1 1.4395 5.0015 -0.5915 9 6 2.0777 5.3549 1.4355 10 6 1.6233 6.8157 1.4343 11 6 2.7207 7.6907 0.8253 12 1 3.6319 7.5940 1.4156 13 6 2.2729 9.1297 0.8235 14 7 1.7123 9.6224 -0.2486 15 6 1.2984 10.8909 -0.2993 16 6 1.4582 11.7012 0.7837 17 6 2.0633 11.1694 1.9412 18 8 2.2250 11.8606 2.9331 19 7 2.4595 9.8786 1.9280 20 6 2.9937 7.2403 -0.6113 21 6 3.4480 5.7794 -0.6101 22 6 3.6881 0.6151 -0.0061 23 6 3.6095 -0.7275 -0.0007 24 6 4.7819 -1.6744 -0.0006 25 8 5.5759 -1.4497 -1.1672 26 14 4.1614 -3.4310 -0.0005 27 7 2.2947 -1.0922 -0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 3.7312 3.2913 0.0005 32 1 1.2955 4.7317 1.8692 33 1 2.9888 5.2578 2.0259 34 1 1.4285 7.1365 2.4577 35 1 0.7121 6.9124 0.8439 36 1 0.8419 11.2752 -1.1995 37 1 1.1284 12.7293 0.7567 38 1 2.8782 9.4912 2.7125 39 1 2.0824 7.3369 -1.2016 40 1 3.7752 7.8639 -1.0453 41 1 3.6420 5.4584 -1.6335 42 1 4.3592 5.6827 -0.0197 43 1 4.5890 1.2108 -0.0115 44 1 5.3873 -1.5029 0.8895 45 1 6.3496 -2.0260 -1.2335 46 1 3.3345 -3.6776 -1.2092 47 1 5.3076 -4.3745 0.0318 48 1 1.9733 -2.0074 -0.0004 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_9865296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:00:36 Heat of formation + Delta-G solvation = -30.057358 kcal Electronic energy + Delta-G solvation = -31436.504016 eV Core-core repulsion = 27072.294616 eV Total energy + Delta-G solvation = -4364.209400 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.88113 -42.42885 -40.67342 -39.41325 -38.39218 -37.83828 -35.79733 -35.07464 -32.86581 -32.80102 -31.93483 -31.71772 -29.99946 -28.92170 -26.15584 -25.54225 -25.05446 -23.67614 -23.50017 -22.17820 -21.37303 -21.13372 -20.25639 -19.74132 -19.12174 -18.66751 -18.09864 -17.80442 -17.32352 -17.03460 -16.91875 -16.26712 -16.06231 -15.84226 -15.60979 -15.42333 -15.20488 -15.13333 -14.89289 -14.56544 -14.47472 -14.39279 -14.07618 -14.02252 -13.92193 -13.64648 -13.40464 -13.36291 -13.11365 -12.90203 -12.52116 -12.44569 -12.28951 -12.11369 -12.07581 -12.00757 -11.55855 -11.35920 -11.25928 -11.06539 -10.84322 -10.53467 -10.05590 -9.74724 -9.65214 -9.10367 -5.07262 -0.43895 0.69513 0.74421 1.11046 1.31704 1.46998 1.57653 1.81884 2.04949 2.44171 2.52121 2.59501 2.81070 3.42168 3.44919 3.60204 3.68696 3.72135 3.76042 3.92072 4.01874 4.14057 4.19728 4.24609 4.26437 4.32908 4.40896 4.44940 4.47409 4.52459 4.56026 4.56874 4.71438 4.73747 4.80823 4.87106 4.90457 5.04036 5.08242 5.12689 5.20896 5.24933 5.30433 5.36952 5.37447 5.48476 5.52506 5.68584 5.74842 5.90645 6.42154 6.59146 6.68205 6.72946 6.74306 7.43640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.115 3.885 3 C -0.264 4.264 4 C 0.588 3.412 5 O -0.585 6.585 6 N -0.713 5.713 7 C 0.145 3.855 8 H 0.065 0.935 9 C -0.118 4.118 10 C -0.103 4.103 11 C -0.039 4.039 12 H 0.132 0.868 13 C 0.410 3.590 14 N -0.545 5.545 15 C 0.173 3.827 16 C -0.319 4.319 17 C 0.509 3.491 18 O -0.593 6.593 19 N -0.615 5.615 20 C -0.091 4.091 21 C -0.118 4.118 22 C -0.135 4.135 23 C 0.011 3.989 24 C -0.048 4.048 25 O -0.553 6.553 26 Si 0.747 3.253 27 N -0.537 5.537 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.411 0.589 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.198 0.802 37 H 0.159 0.841 38 H 0.429 0.571 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.160 0.840 44 H 0.113 0.887 45 H 0.399 0.601 46 H -0.295 1.295 47 H -0.276 1.276 48 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.685 -8.192 0.179 9.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.005 4.005 3 C -0.274 4.274 4 C 0.379 3.621 5 O -0.467 6.467 6 N -0.363 5.363 7 C 0.041 3.959 8 H 0.083 0.917 9 C -0.157 4.157 10 C -0.142 4.142 11 C -0.060 4.060 12 H 0.150 0.850 13 C 0.146 3.854 14 N -0.268 5.268 15 C 0.033 3.967 16 C -0.343 4.343 17 C 0.310 3.690 18 O -0.476 6.476 19 N -0.252 5.252 20 C -0.130 4.130 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.097 4.097 24 C -0.158 4.158 25 O -0.364 6.364 26 Si 0.651 3.349 27 N -0.138 5.138 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.247 0.753 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.215 0.785 37 H 0.176 0.824 38 H 0.269 0.731 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.178 0.822 44 H 0.130 0.870 45 H 0.251 0.749 46 H -0.222 1.222 47 H -0.201 1.201 48 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.269 -8.255 -0.590 8.899 hybrid contribution 1.363 0.244 0.261 1.409 sum 4.632 -8.012 -0.328 9.260 Atomic orbital electron populations 1.20608 0.86044 1.04855 1.03795 1.20581 0.94312 0.85571 1.00004 1.20244 0.94010 0.91994 1.21154 1.17542 0.85094 0.84843 0.74666 1.90727 1.18103 1.84926 1.52966 1.45739 1.10025 1.05415 1.75135 1.21006 0.98543 0.79749 0.96648 0.91721 1.21810 1.02374 0.94797 0.96707 1.21490 0.97323 0.93908 1.01462 1.20671 1.00733 0.83360 1.01195 0.85047 1.23700 0.86192 0.94660 0.80849 1.68394 1.18934 1.15405 1.24080 1.23178 0.88019 0.87235 0.98226 1.23000 1.12090 1.04916 0.94307 1.17657 0.80157 0.81158 0.90031 1.90986 1.60068 1.59262 1.37300 1.44629 1.50777 1.12387 1.17414 1.21312 1.03188 0.94956 0.93509 1.21780 0.97944 0.93619 1.02247 1.21957 0.95532 0.93026 1.05414 1.19466 0.83867 0.94747 1.11661 1.24203 0.92480 1.07706 0.91415 1.86556 1.42681 1.63441 1.43686 0.94740 0.82668 0.72174 0.85361 1.41654 1.05198 1.08826 1.58088 0.90294 0.88922 0.89672 0.75262 0.92944 0.89399 0.90368 0.91862 0.78543 0.82353 0.73067 0.90774 0.90074 0.90540 0.88904 0.82223 0.86969 0.74948 1.22250 1.20147 0.73471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.04 9.88 71.23 0.70 0.66 16 2 C 0.11 0.28 7.17 41.78 0.30 0.58 16 3 C -0.26 -1.15 6.29 -19.04 -0.12 -1.27 16 4 C 0.59 3.70 7.77 86.61 0.67 4.37 16 5 O -0.59 -7.54 14.48 -4.11 -0.06 -7.60 16 6 N -0.71 0.61 5.07 -445.95 -2.26 -1.66 16 7 C 0.14 -0.36 2.45 44.99 0.11 -0.25 16 8 H 0.06 0.23 7.58 -2.39 -0.02 0.21 16 9 C -0.12 0.48 5.49 30.59 0.17 0.65 16 10 C -0.10 0.58 5.19 30.59 0.16 0.74 16 11 C -0.04 0.32 2.48 -11.54 -0.03 0.29 16 12 H 0.13 -1.77 8.14 -2.39 -0.02 -1.79 16 13 C 0.41 -1.15 6.73 138.19 0.93 -0.22 16 14 N -0.54 0.13 9.11 -187.56 -1.71 -1.58 16 15 C 0.17 -0.11 11.20 83.96 0.94 0.83 16 16 C -0.32 -1.21 10.07 22.48 0.23 -0.98 16 17 C 0.51 4.05 7.75 84.88 0.66 4.71 16 18 O -0.59 -10.24 17.97 -5.25 -0.09 -10.33 16 19 N -0.61 0.32 5.25 -310.69 -1.63 -1.31 16 20 C -0.09 0.64 4.67 30.59 0.14 0.78 16 21 C -0.12 0.93 5.39 30.59 0.16 1.09 16 22 C -0.14 -0.11 10.43 23.62 0.25 0.14 16 23 C 0.01 -0.01 6.14 40.98 0.25 0.24 16 24 C -0.05 0.25 2.97 71.24 0.21 0.46 16 25 O -0.55 1.22 12.84 -148.98 -1.91 -0.69 16 26 Si 0.75 -4.79 30.94 68.60 2.12 -2.67 16 27 N -0.54 0.85 5.41 -171.07 -0.93 -0.08 16 28 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.08 0.42 6.47 -2.38 -0.02 0.40 16 31 H 0.41 -2.35 7.73 -92.71 -0.72 -3.06 16 32 H 0.05 0.09 8.14 -2.38 -0.02 0.07 16 33 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H 0.06 -0.11 8.14 -2.38 -0.02 -0.13 16 36 H 0.20 -1.36 8.06 -2.91 -0.02 -1.38 16 37 H 0.16 0.40 8.06 -2.91 -0.02 0.37 16 38 H 0.43 -2.26 8.78 -92.71 -0.81 -3.08 16 39 H 0.07 -0.25 7.76 -2.38 -0.02 -0.27 16 40 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 41 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.09 -1.09 8.14 -2.39 -0.02 -1.11 16 43 H 0.16 -0.53 7.70 -2.91 -0.02 -0.55 16 44 H 0.11 -1.09 7.96 -2.39 -0.02 -1.11 16 45 H 0.40 -4.12 8.74 -74.05 -0.65 -4.77 16 46 H -0.30 -0.33 7.11 99.48 0.71 0.38 16 47 H -0.28 0.56 7.11 99.48 0.71 1.27 16 48 H 0.42 -2.89 6.70 -92.71 -0.62 -3.51 16 Total: 0.00 -31.60 394.32 -2.45 -34.05 By element: Atomic # 1 Polarization: -19.25 SS G_CDS: -1.72 Total: -20.97 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 5.74 Total: 12.84 kcal Atomic # 7 Polarization: 1.90 SS G_CDS: -6.53 Total: -4.62 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -2.07 Total: -18.62 kcal Atomic # 14 Polarization: -4.79 SS G_CDS: 2.12 Total: -2.67 kcal Total: -31.60 -2.45 -34.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_9865296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.995 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds