Wall clock time and date at job start Sat Mar 6 2021 21:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42898 * 109.47263 * 2 1 4 4 C 1.35899 * 117.00376 * 83.94386 * 3 2 1 5 5 C 1.38732 * 120.05894 * 174.71502 * 4 3 2 6 6 C 1.38145 * 119.94271 * 179.74811 * 5 4 3 7 7 C 1.38270 * 120.05463 * 0.50959 * 6 5 4 8 8 C 1.50695 * 119.94095 * 179.74512 * 7 6 5 9 9 O 1.42896 * 109.47107 * 120.02274 * 8 7 6 10 10 Si 1.86298 * 109.47304 * 0.02562 * 8 7 6 11 11 C 1.38267 * 120.11124 * 359.76847 * 7 6 5 12 12 C 1.38140 * 120.05496 * 359.97438 * 11 7 6 13 13 C 1.50709 * 109.47146 * 239.99965 * 2 1 3 14 14 O 1.21279 * 119.99829 * 119.99845 * 13 2 1 15 15 N 1.34773 * 119.99834 * 300.00184 * 13 2 1 16 16 C 1.46503 * 119.99881 * 179.97438 * 15 13 2 17 17 C 1.53001 * 109.46912 * 182.64723 * 16 15 13 18 18 C 1.50695 * 112.85513 * 295.95627 * 17 16 15 19 19 C 1.38239 * 119.99669 * 294.09720 * 18 17 16 20 20 C 1.38233 * 120.00067 * 180.02562 * 19 18 17 21 21 C 1.38237 * 119.99801 * 0.02562 * 20 19 18 22 22 C 1.38235 * 120.00240 * 0.24375 * 21 20 19 23 23 C 1.38227 * 120.00419 * 114.11933 * 18 17 16 24 24 C 1.53783 * 113.61033 * 164.75387 * 17 16 15 25 25 C 1.53948 * 87.02370 * 270.77613 * 24 17 16 26 26 H 1.08996 * 113.61463 * 89.19791 * 25 24 17 27 27 F 1.39893 * 113.66830 * 220.06972 * 25 24 17 28 28 C 1.53784 * 87.11157 * 334.63772 * 25 24 17 29 29 H 1.09000 * 109.47326 * 60.00170 * 1 2 3 30 30 H 1.09008 * 109.47018 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47534 * 299.99723 * 1 2 3 32 32 H 1.09000 * 109.47326 * 119.99830 * 2 1 3 33 33 H 1.08002 * 120.02759 * 0.02562 * 5 4 3 34 34 H 1.07996 * 119.96921 * 180.23816 * 6 5 4 35 35 H 1.08996 * 109.47459 * 240.02447 * 8 7 6 36 36 H 0.96705 * 114.00348 * 300.00229 * 9 8 7 37 37 H 1.48499 * 110.00129 * 58.68179 * 10 8 7 38 38 H 1.48509 * 110.00102 * 180.02562 * 10 8 7 39 39 H 1.08000 * 119.96734 * 179.97438 * 11 7 6 40 40 H 1.08007 * 120.02381 * 179.97438 * 12 11 7 41 41 H 0.96997 * 120.00473 * 359.97438 * 15 13 2 42 42 H 1.09002 * 109.46855 * 62.65497 * 16 15 13 43 43 H 1.08988 * 109.47194 * 302.65253 * 16 15 13 44 44 H 1.07998 * 120.00075 * 0.02562 * 19 18 17 45 45 H 1.07995 * 120.00324 * 179.97438 * 20 19 18 46 46 H 1.08002 * 120.00254 * 179.97438 * 21 20 19 47 47 H 1.07997 * 120.00622 * 179.72269 * 22 21 20 48 48 H 1.08006 * 119.99764 * 0.02562 * 23 18 17 49 49 H 1.09001 * 113.61172 * 25.35435 * 24 17 16 50 50 H 1.09002 * 113.61083 * 156.25192 * 24 17 16 51 51 H 1.08997 * 113.61302 * 270.81224 * 28 25 24 52 52 H 1.09002 * 113.61823 * 139.90749 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0916 1.9716 1.2041 5 6 2.6480 3.2394 1.2916 6 6 2.7287 3.8740 2.5160 7 6 2.2651 3.2423 3.6552 8 6 2.3597 3.9346 4.9904 9 8 1.0500 4.0891 5.5407 10 14 3.1410 5.6109 4.7669 11 6 1.7154 1.9764 3.5715 12 6 1.6276 1.3397 2.3487 13 6 2.0323 -0.7105 -1.2305 14 8 2.7295 -0.1210 -2.0288 15 7 1.7067 -2.0007 -1.4438 16 6 2.1946 -2.6912 -2.6402 17 6 1.6309 -4.1132 -2.6739 18 6 2.1129 -4.9612 -1.5252 19 6 3.4502 -5.2978 -1.4281 20 6 3.8923 -6.0760 -0.3747 21 6 2.9971 -6.5182 0.5813 22 6 1.6589 -6.1864 0.4812 23 6 1.2179 -5.4029 -0.5689 24 6 1.7670 -4.7975 -4.0444 25 6 0.3959 -4.1908 -4.3937 26 1 0.4586 -3.1990 -4.8415 27 9 -0.4362 -5.0583 -5.1093 28 6 0.1083 -4.1675 -2.8832 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0136 3.7317 0.4025 34 1 3.1582 4.8625 2.5840 35 1 2.9699 3.3367 5.6673 36 1 0.4511 4.6118 4.9900 37 1 2.3355 6.4247 3.8213 38 1 3.2405 6.3037 6.0767 39 1 1.3544 1.4849 4.4629 40 1 1.1985 0.3507 2.2839 41 1 1.1493 -2.4723 -0.8052 42 1 3.2836 -2.7326 -2.6172 43 1 1.8702 -2.1507 -3.5293 44 1 4.1495 -4.9526 -2.1752 45 1 4.9369 -6.3393 -0.2990 46 1 3.3424 -7.1267 1.4041 47 1 0.9587 -6.5355 1.2256 48 1 0.1729 -5.1406 -0.6452 49 1 2.5855 -4.4059 -4.6485 50 1 1.7620 -5.8862 -3.9912 51 1 -0.3511 -5.0836 -2.5121 52 1 -0.4104 -3.2681 -2.5512 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_10157680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:25:56 Heat of formation + Delta-G solvation = -63.693246 kcal Electronic energy + Delta-G solvation = -35471.509160 eV Core-core repulsion = 30704.438815 eV Total energy + Delta-G solvation = -4767.070345 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.173 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -48.58133 -41.95154 -41.40809 -40.39031 -39.13027 -38.69315 -37.27823 -35.55437 -33.33781 -32.08814 -31.99936 -31.84503 -31.43101 -28.61346 -27.12785 -26.68082 -25.53313 -24.79637 -23.99724 -23.21757 -22.54486 -22.39292 -21.41061 -20.02493 -19.49657 -18.65293 -18.38507 -18.16468 -17.47207 -17.26277 -16.90061 -16.63059 -16.52922 -16.33760 -16.23045 -16.01350 -15.82533 -15.67083 -15.50510 -15.42992 -15.08060 -14.80138 -14.66472 -14.48865 -14.30654 -14.27080 -14.25208 -13.71626 -13.60068 -13.51721 -13.38918 -13.34365 -13.31643 -12.87975 -12.51096 -12.44166 -12.26779 -12.20955 -12.19478 -12.00646 -11.78638 -11.60703 -11.33845 -11.26367 -10.97619 -10.59848 -10.26043 -10.04432 -9.82057 -9.64846 -9.22842 -4.91396 0.24135 0.32273 0.40718 0.49670 1.33058 1.37748 1.45849 1.60357 1.95715 2.44017 2.64380 2.82267 3.12729 3.21553 3.39397 3.44216 3.45599 3.58158 3.60817 3.66470 3.72224 3.79997 3.85742 3.87416 3.92108 4.11751 4.13179 4.20256 4.26690 4.30162 4.35005 4.47557 4.53968 4.57714 4.60025 4.63343 4.64490 4.66750 4.68708 4.70673 4.72297 4.85733 4.94741 4.99075 5.07218 5.09858 5.15166 5.18155 5.22527 5.27261 5.28702 5.47588 5.58602 5.64036 5.65395 5.67285 6.09846 6.22979 6.39550 6.50111 7.03129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.064 3.936 3 O -0.311 6.311 4 C 0.121 3.879 5 C -0.160 4.160 6 C -0.076 4.076 7 C -0.158 4.158 8 C -0.072 4.072 9 O -0.548 6.548 10 Si 0.756 3.244 11 C -0.056 4.056 12 C -0.208 4.208 13 C 0.519 3.481 14 O -0.565 6.565 15 N -0.703 5.703 16 C 0.147 3.853 17 C -0.040 4.040 18 C -0.072 4.072 19 C -0.122 4.122 20 C -0.130 4.130 21 C -0.132 4.132 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.139 4.139 25 C 0.054 3.946 26 H 0.122 0.878 27 F -0.224 7.224 28 C -0.146 4.146 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.148 0.852 35 H 0.126 0.874 36 H 0.386 0.614 37 H -0.285 1.285 38 H -0.304 1.304 39 H 0.139 0.861 40 H 0.153 0.847 41 H 0.416 0.584 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.130 0.870 47 H 0.137 0.863 48 H 0.143 0.857 49 H 0.094 0.906 50 H 0.097 0.903 51 H 0.106 0.894 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 -3.936 2.614 4.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.005 3.995 3 O -0.224 6.224 4 C 0.076 3.924 5 C -0.178 4.178 6 C -0.094 4.094 7 C -0.159 4.159 8 C -0.182 4.182 9 O -0.356 6.356 10 Si 0.662 3.338 11 C -0.075 4.075 12 C -0.227 4.227 13 C 0.305 3.695 14 O -0.443 6.443 15 N -0.357 5.357 16 C 0.024 3.976 17 C -0.041 4.041 18 C -0.072 4.072 19 C -0.140 4.140 20 C -0.148 4.148 21 C -0.150 4.150 22 C -0.142 4.142 23 C -0.138 4.138 24 C -0.177 4.177 25 C 0.018 3.982 26 H 0.140 0.860 27 F -0.205 7.205 28 C -0.183 4.183 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.139 0.861 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.144 0.856 36 H 0.235 0.765 37 H -0.211 1.211 38 H -0.232 1.232 39 H 0.157 0.843 40 H 0.170 0.830 41 H 0.253 0.747 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.155 0.845 48 H 0.161 0.839 49 H 0.113 0.887 50 H 0.115 0.885 51 H 0.125 0.875 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.307 -2.979 2.362 3.814 hybrid contribution -1.256 -0.406 0.087 1.323 sum -1.563 -3.385 2.449 4.461 Atomic orbital electron populations 1.22389 0.90517 1.05672 1.04515 1.22380 0.97169 0.82220 0.97736 1.86179 1.81395 1.26729 1.28087 1.19258 0.95863 0.93057 0.84269 1.20587 1.03989 0.93957 0.99280 1.20975 0.97650 0.99741 0.91010 1.20269 1.03690 0.96522 0.95393 1.25055 0.88539 1.10367 0.94215 1.86561 1.22705 1.75665 1.50668 0.94153 0.88688 0.73492 0.77473 1.20984 0.95402 0.93622 0.97446 1.21519 1.06583 1.02545 0.92015 1.20408 0.79841 0.82288 0.86985 1.90760 1.38799 1.66952 1.47821 1.45588 1.53661 1.10514 1.25943 1.21144 0.99141 0.89431 0.87880 1.20551 0.96559 0.93044 0.93910 1.19460 0.93579 0.98591 0.95619 1.21132 0.95650 0.98597 0.98593 1.21374 1.00475 0.98104 0.94829 1.21457 0.94039 1.00157 0.99375 1.21437 0.96018 0.98030 0.98699 1.21310 1.00318 0.98210 0.94006 1.23663 0.97554 1.01870 0.94638 1.23400 0.89584 0.93418 0.91798 0.86004 1.92787 1.74293 1.72540 1.80842 1.23770 0.94868 1.05415 0.94243 0.91739 0.87313 0.89757 0.86088 0.84671 0.83488 0.85605 0.76527 1.21129 1.23189 0.84291 0.82973 0.74684 0.91337 0.90367 0.85823 0.85409 0.85182 0.84464 0.83902 0.88691 0.88490 0.87538 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.16 9.05 71.98 0.65 1.81 16 2 C 0.06 -0.09 2.65 29.85 0.08 -0.01 16 3 O -0.31 -1.86 9.34 -73.37 -0.69 -2.54 16 4 C 0.12 0.42 6.59 22.51 0.15 0.56 16 5 C -0.16 -0.50 9.99 22.37 0.22 -0.27 16 6 C -0.08 0.00 8.66 22.26 0.19 0.19 16 7 C -0.16 0.04 5.39 -19.85 -0.11 -0.06 16 8 C -0.07 0.08 2.82 71.23 0.20 0.28 16 9 O -0.55 -0.90 12.77 -148.98 -1.90 -2.80 16 10 Si 0.76 -1.20 29.78 68.60 2.04 0.84 16 11 C -0.06 0.04 9.60 22.25 0.21 0.25 16 12 C -0.21 0.18 8.20 22.36 0.18 0.36 16 13 C 0.52 1.30 7.23 87.66 0.63 1.94 16 14 O -0.57 -7.41 16.50 16.01 0.26 -7.14 16 15 N -0.70 3.24 5.12 -463.06 -2.37 0.87 16 16 C 0.15 -0.57 4.83 86.38 0.42 -0.15 16 17 C -0.04 0.26 0.63 -52.40 -0.03 0.23 16 18 C -0.07 0.33 4.48 -19.87 -0.09 0.24 16 19 C -0.12 0.27 9.36 22.27 0.21 0.47 16 20 C -0.13 0.21 10.05 22.27 0.22 0.43 16 21 C -0.13 0.33 10.05 22.27 0.22 0.55 16 22 C -0.12 0.53 10.05 22.27 0.22 0.75 16 23 C -0.12 0.69 9.05 22.27 0.20 0.89 16 24 C -0.14 0.69 7.02 31.18 0.22 0.91 16 25 C 0.05 -0.21 5.32 31.18 0.17 -0.04 16 26 H 0.12 -0.75 7.61 -2.39 -0.02 -0.77 16 27 F -0.22 -0.76 17.41 44.97 0.78 0.02 16 28 C -0.15 1.09 6.12 31.12 0.19 1.28 16 29 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.11 -1.41 7.57 -2.38 -0.02 -1.43 16 31 H 0.08 -0.60 6.83 -2.39 -0.02 -0.61 16 32 H 0.12 -0.74 6.35 -2.39 -0.02 -0.76 16 33 H 0.14 0.34 8.06 -2.91 -0.02 0.32 16 34 H 0.15 -0.55 4.87 -2.91 -0.01 -0.57 16 35 H 0.13 -0.37 7.96 -2.39 -0.02 -0.39 16 36 H 0.39 -1.37 8.70 -74.05 -0.64 -2.01 16 37 H -0.28 -0.71 7.11 99.48 0.71 -0.01 16 38 H -0.30 -1.89 7.11 99.48 0.71 -1.18 16 39 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 40 H 0.15 -0.94 5.41 -2.91 -0.02 -0.96 16 41 H 0.42 -4.16 7.64 -92.71 -0.71 -4.86 16 42 H 0.07 -0.08 7.99 -2.39 -0.02 -0.10 16 43 H 0.08 -0.24 7.31 -2.39 -0.02 -0.25 16 44 H 0.12 -0.41 8.06 -2.91 -0.02 -0.44 16 45 H 0.13 -0.45 8.06 -2.91 -0.02 -0.48 16 46 H 0.13 -0.63 8.06 -2.91 -0.02 -0.66 16 47 H 0.14 -1.04 8.06 -2.91 -0.02 -1.06 16 48 H 0.14 -1.42 6.41 -2.91 -0.02 -1.44 16 49 H 0.09 -0.59 8.10 -2.39 -0.02 -0.61 16 50 H 0.10 -0.31 8.09 -2.39 -0.02 -0.33 16 51 H 0.11 -0.78 6.79 -2.39 -0.02 -0.80 16 52 H 0.10 -1.02 7.99 -2.39 -0.02 -1.04 16 Total: 0.00 -23.38 424.36 2.16 -21.22 By element: Atomic # 1 Polarization: -20.72 SS G_CDS: -0.34 Total: -21.07 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 4.37 Total: 10.60 kcal Atomic # 7 Polarization: 3.24 SS G_CDS: -2.37 Total: 0.87 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -2.32 Total: -12.49 kcal Atomic # 9 Polarization: -0.76 SS G_CDS: 0.78 Total: 0.02 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: 2.04 Total: 0.84 kcal Total: -23.38 2.16 -21.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_10157680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.476 kcal (2) G-P(sol) polarization free energy of solvation -23.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds