Wall clock time and date at job start Sat Mar 6 2021 21:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47333 * 2 1 4 4 C 1.50701 * 109.47311 * 119.99940 * 2 1 3 5 5 C 1.35444 * 126.06917 * 245.02535 * 4 2 1 6 6 N 1.35536 * 108.87298 * 179.97438 * 5 4 2 7 7 C 1.37650 * 108.64544 * 0.02562 * 6 5 4 8 8 C 1.46672 * 126.23783 * 179.97438 * 7 6 5 9 9 O 1.21692 * 120.00103 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99946 * 0.02562 * 8 7 6 11 11 C 1.46496 * 120.00292 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47444 * 184.77833 * 11 10 8 13 13 C 1.50704 * 112.84962 * 65.36179 * 12 11 10 14 14 C 1.38229 * 120.00221 * 246.25798 * 13 12 11 15 15 C 1.38240 * 119.99877 * 179.78647 * 14 13 12 16 16 C 1.38231 * 119.99890 * 0.45070 * 15 14 13 17 17 C 1.38235 * 120.00246 * 359.80080 * 16 15 14 18 18 C 1.38237 * 119.99574 * 66.53509 * 13 12 11 19 19 C 1.53784 * 113.61351 * 294.17046 * 12 11 10 20 20 C 1.53778 * 87.08176 * 270.88214 * 19 12 11 21 21 H 1.08996 * 113.61286 * 89.19509 * 20 19 12 22 22 F 1.39897 * 113.61500 * 220.01799 * 20 19 12 23 23 C 1.53783 * 113.61605 * 196.67263 * 12 11 10 24 24 C 1.37881 * 107.53089 * 0.25801 * 7 6 5 25 25 H 0.96705 * 113.99942 * 300.00454 * 1 2 3 26 26 H 1.09005 * 109.47351 * 239.99770 * 2 1 3 27 27 H 1.48505 * 109.99788 * 299.99818 * 3 2 1 28 28 H 1.48497 * 109.99724 * 61.31556 * 3 2 1 29 29 H 1.07997 * 125.56611 * 359.94287 * 5 4 2 30 30 H 0.96999 * 125.68082 * 180.02562 * 6 5 4 31 31 H 0.97005 * 120.00052 * 0.02562 * 10 8 7 32 32 H 1.08995 * 109.47241 * 64.77304 * 11 10 8 33 33 H 1.09006 * 109.47160 * 304.77523 * 11 10 8 34 34 H 1.08004 * 120.00165 * 0.02562 * 14 13 12 35 35 H 1.08002 * 119.99896 * 180.27561 * 15 14 13 36 36 H 1.08006 * 119.99825 * 179.83446 * 16 15 14 37 37 H 1.08003 * 120.00149 * 179.97438 * 17 16 15 38 38 H 1.07998 * 120.00118 * 359.97438 * 18 13 12 39 39 H 1.09004 * 113.61441 * 25.43280 * 19 12 11 40 40 H 1.09002 * 113.61286 * 156.32996 * 19 12 11 41 41 H 1.09003 * 113.61063 * 203.66298 * 23 12 11 42 42 H 1.08997 * 113.61570 * 334.56573 * 23 12 11 43 43 H 1.07995 * 126.45235 * 179.70798 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6330 -0.1498 2.2443 6 7 2.9046 -1.1028 3.1690 7 6 2.3686 -2.2963 2.7414 8 6 2.4372 -3.5800 3.4476 9 8 1.9211 -4.5696 2.9625 10 7 3.0716 -3.6636 4.6337 11 6 3.1406 -4.9458 5.3389 12 6 3.8041 -4.7430 6.7025 13 6 2.9879 -3.8774 7.6276 14 6 3.4623 -2.6372 8.0117 15 6 2.7116 -1.8414 8.8568 16 6 1.4907 -2.2898 9.3250 17 6 1.0187 -3.5323 8.9450 18 6 1.7674 -4.3262 8.0965 19 6 5.2817 -4.3261 6.6126 20 6 5.6231 -5.8255 6.6100 21 1 5.6489 -6.2657 5.6132 22 9 6.7504 -6.1449 7.3744 23 6 4.2936 -6.0493 7.3498 24 6 1.7612 -2.0668 1.5251 25 1 -0.3933 0.4418 0.7651 26 1 1.7924 -0.5139 -0.8900 27 1 1.5615 2.4679 -1.2086 28 1 1.5879 2.4585 1.2242 29 1 2.9283 0.8872 2.3057 30 1 3.3951 -0.9665 3.9947 31 1 3.4826 -2.8746 5.0206 32 1 3.7263 -5.6526 4.7513 33 1 2.1332 -5.3376 5.4798 34 1 4.4178 -2.2883 7.6486 35 1 3.0802 -0.8706 9.1534 36 1 0.9054 -1.6692 9.9874 37 1 0.0650 -3.8828 9.3112 38 1 1.3986 -5.2969 7.7995 39 1 5.5364 -3.8187 5.6822 40 1 5.6408 -3.7980 7.4960 41 1 4.3826 -5.9922 8.4347 42 1 3.7506 -6.9329 7.0146 43 1 1.2484 -2.7965 0.9160 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13458982_10543058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:26:01 Heat of formation + Delta-G solvation = -15.972685 kcal Electronic energy + Delta-G solvation = -28039.956227 eV Core-core repulsion = 23967.512860 eV Total energy + Delta-G solvation = -4072.443366 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.60957 -42.53933 -41.67799 -39.97721 -38.89589 -37.75315 -35.45333 -32.66995 -32.20094 -32.03769 -30.92709 -28.74677 -27.35221 -26.43765 -25.27822 -23.75132 -23.34548 -22.67826 -21.25545 -20.81949 -20.51130 -19.60260 -18.55498 -17.74548 -17.50024 -17.19761 -16.85418 -16.70033 -16.50727 -16.16353 -15.97166 -15.76915 -15.61923 -15.54405 -15.07668 -14.95617 -14.62194 -14.46967 -14.42363 -14.26173 -13.83089 -13.77352 -13.69798 -13.50931 -13.45313 -12.68074 -12.60629 -12.41416 -12.37528 -11.97233 -11.81268 -11.52219 -11.46514 -11.20691 -10.48614 -10.30189 -9.99949 -9.99376 -9.81492 -9.34044 -4.96532 0.24018 0.32109 0.38451 1.31278 1.51373 1.58292 1.85100 1.96437 2.00802 2.35064 2.65294 2.92795 3.03975 3.21707 3.34816 3.42825 3.50712 3.68311 3.74187 3.86130 3.89559 3.92678 4.00524 4.01331 4.09131 4.31054 4.33245 4.39532 4.42600 4.46481 4.49366 4.54462 4.62152 4.72614 4.76753 4.88579 4.91062 4.94936 5.02739 5.07625 5.16615 5.39872 5.45891 5.48062 5.56183 5.77015 5.90709 6.15849 6.34961 6.53708 7.07099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.040 4.040 3 Si 0.683 3.317 4 C -0.208 4.208 5 C 0.036 3.964 6 N -0.535 5.535 7 C -0.058 4.058 8 C 0.591 3.409 9 O -0.523 6.523 10 N -0.728 5.728 11 C 0.147 3.853 12 C -0.056 4.056 13 C -0.068 4.068 14 C -0.121 4.121 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.114 4.114 18 C -0.108 4.108 19 C -0.155 4.155 20 C 0.066 3.934 21 H 0.113 0.887 22 F -0.203 7.203 23 C -0.139 4.139 24 C -0.074 4.074 25 H 0.374 0.626 26 H 0.116 0.884 27 H -0.258 1.258 28 H -0.261 1.261 29 H 0.175 0.825 30 H 0.417 0.583 31 H 0.395 0.605 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 3.786 3.353 6.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.151 4.151 3 Si 0.584 3.416 4 C -0.215 4.215 5 C -0.101 4.101 6 N -0.131 5.131 7 C -0.170 4.170 8 C 0.379 3.621 9 O -0.398 6.398 10 N -0.380 5.380 11 C 0.024 3.976 12 C -0.056 4.056 13 C -0.068 4.068 14 C -0.139 4.139 15 C -0.135 4.135 16 C -0.138 4.138 17 C -0.132 4.132 18 C -0.126 4.126 19 C -0.192 4.192 20 C 0.030 3.970 21 H 0.130 0.870 22 F -0.184 7.184 23 C -0.178 4.178 24 C -0.101 4.101 25 H 0.221 0.779 26 H 0.133 0.867 27 H -0.183 1.183 28 H -0.186 1.186 29 H 0.192 0.808 30 H 0.255 0.745 31 H 0.228 0.772 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.108 0.892 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.984 3.521 2.621 5.307 hybrid contribution -0.617 0.364 1.332 1.512 sum 2.367 3.885 3.953 6.026 Atomic orbital electron populations 1.86613 1.18062 1.79847 1.49092 1.24331 0.83372 1.09973 0.97421 0.95402 0.91283 0.74522 0.80378 1.19834 1.07613 0.95045 0.98998 1.21895 1.02894 0.94698 0.90619 1.41921 1.43842 1.07854 1.19489 1.20380 1.11060 0.86015 0.99573 1.17013 0.78144 0.86797 0.80150 1.90888 1.46197 1.36158 1.66590 1.45731 1.58248 1.12415 1.21580 1.21154 1.01796 0.85389 0.89286 1.20777 0.93773 0.96909 0.94180 1.19381 0.94960 0.94607 0.97865 1.21050 0.99935 0.94008 0.98931 1.21174 0.94891 0.99829 0.97562 1.21240 0.96330 0.96326 0.99871 1.21212 0.99887 0.94503 0.97620 1.20991 0.94114 1.00001 0.97527 1.23796 0.94220 0.96793 1.04419 1.23080 0.82163 0.96556 0.95192 0.86965 1.92833 1.54110 1.93903 1.77542 1.23648 0.95260 0.96939 1.01908 1.21233 0.99187 0.95688 0.93947 0.77875 0.86667 1.18286 1.18564 0.80761 0.74537 0.77151 0.90433 0.89987 0.85934 0.85899 0.85948 0.85821 0.85956 0.89791 0.87761 0.87821 0.89239 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.96 12.88 -35.23 -0.45 -1.41 16 2 C -0.04 0.01 3.02 36.01 0.11 0.12 16 3 Si 0.68 -1.19 30.60 -169.99 -5.20 -6.39 16 4 C -0.21 0.00 5.43 -105.02 -0.57 -0.57 16 5 C 0.04 -0.08 10.45 -16.91 -0.18 -0.26 16 6 N -0.54 1.37 5.99 -9.39 -0.06 1.32 16 7 C -0.06 -0.05 7.06 -81.98 -0.58 -0.63 16 8 C 0.59 1.13 7.79 -12.86 -0.10 1.03 16 9 O -0.52 -3.12 16.88 5.20 0.09 -3.03 16 10 N -0.73 1.08 5.18 -61.62 -0.32 0.77 16 11 C 0.15 -0.24 4.84 -4.04 -0.02 -0.26 16 12 C -0.06 0.16 0.63 -154.84 -0.10 0.06 16 13 C -0.07 0.12 4.64 -104.62 -0.49 -0.37 16 14 C -0.12 0.25 9.05 -39.58 -0.36 -0.11 16 15 C -0.12 0.17 10.05 -39.58 -0.40 -0.22 16 16 C -0.12 0.10 10.05 -39.58 -0.40 -0.30 16 17 C -0.11 0.07 10.05 -39.58 -0.40 -0.33 16 18 C -0.11 0.09 9.35 -39.58 -0.37 -0.28 16 19 C -0.15 0.50 5.98 -25.92 -0.16 0.34 16 20 C 0.07 -0.12 5.32 -25.92 -0.14 -0.26 16 21 H 0.11 -0.34 7.61 -51.93 -0.40 -0.74 16 22 F -0.20 -0.31 17.41 2.25 0.04 -0.27 16 23 C -0.14 0.34 6.99 -25.92 -0.18 0.16 16 24 C -0.07 -0.15 10.59 -39.11 -0.41 -0.56 16 25 H 0.37 -0.42 8.70 45.56 0.40 -0.02 16 26 H 0.12 -0.05 7.96 -51.93 -0.41 -0.46 16 27 H -0.26 -0.53 7.11 56.52 0.40 -0.13 16 28 H -0.26 0.07 7.11 56.52 0.40 0.47 16 29 H 0.18 -0.88 6.21 -52.49 -0.33 -1.21 16 30 H 0.42 -2.38 8.19 -40.82 -0.33 -2.71 16 31 H 0.39 -1.50 7.24 -40.82 -0.30 -1.80 16 32 H 0.08 -0.13 7.31 -51.93 -0.38 -0.51 16 33 H 0.08 -0.03 7.97 -51.93 -0.41 -0.45 16 34 H 0.12 -0.48 6.43 -52.48 -0.34 -0.82 16 35 H 0.12 -0.37 8.06 -52.49 -0.42 -0.79 16 36 H 0.12 -0.26 8.06 -52.48 -0.42 -0.68 16 37 H 0.12 -0.22 8.06 -52.48 -0.42 -0.64 16 38 H 0.12 -0.20 8.06 -52.49 -0.42 -0.62 16 39 H 0.08 -0.35 7.81 -51.93 -0.41 -0.76 16 40 H 0.10 -0.31 6.82 -51.93 -0.35 -0.66 16 41 H 0.10 -0.17 8.10 -51.93 -0.42 -0.59 16 42 H 0.09 -0.29 8.10 -51.93 -0.42 -0.71 16 43 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 363.17 15.07 5.47 5.47 Total: 0.00 -9.22 363.17 -10.57 -19.79 By element: Atomic # 1 Polarization: -8.40 SS G_CDS: -5.41 Total: -13.81 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -4.73 Total: -2.44 kcal Atomic # 7 Polarization: 2.46 SS G_CDS: -0.38 Total: 2.08 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.37 Total: -4.44 kcal Atomic # 9 Polarization: -0.31 SS G_CDS: 0.04 Total: -0.27 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -5.20 Total: -6.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -9.22 -10.57 -19.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_10543058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.815 kcal (2) G-P(sol) polarization free energy of solvation -9.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds