Wall clock time and date at job start Sat Mar 6 2021 21:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47333 * 2 1 4 4 C 1.50701 * 109.47311 * 119.99940 * 2 1 3 5 5 C 1.35444 * 126.06917 * 245.02535 * 4 2 1 6 6 N 1.35536 * 108.87298 * 179.97438 * 5 4 2 7 7 C 1.37650 * 108.64544 * 0.02562 * 6 5 4 8 8 C 1.46672 * 126.23783 * 179.97438 * 7 6 5 9 9 O 1.21692 * 120.00103 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99946 * 0.02562 * 8 7 6 11 11 C 1.46496 * 120.00292 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47444 * 184.77833 * 11 10 8 13 13 C 1.50704 * 112.84962 * 65.36179 * 12 11 10 14 14 C 1.38229 * 120.00221 * 246.25798 * 13 12 11 15 15 C 1.38240 * 119.99877 * 179.78647 * 14 13 12 16 16 C 1.38231 * 119.99890 * 0.45070 * 15 14 13 17 17 C 1.38235 * 120.00246 * 359.80080 * 16 15 14 18 18 C 1.38237 * 119.99574 * 66.53509 * 13 12 11 19 19 C 1.53784 * 113.61351 * 294.17046 * 12 11 10 20 20 C 1.53778 * 87.08176 * 270.88214 * 19 12 11 21 21 H 1.08996 * 113.61286 * 89.19509 * 20 19 12 22 22 F 1.39897 * 113.61500 * 220.01799 * 20 19 12 23 23 C 1.53783 * 113.61605 * 196.67263 * 12 11 10 24 24 C 1.37881 * 107.53089 * 0.25801 * 7 6 5 25 25 H 0.96705 * 113.99942 * 300.00454 * 1 2 3 26 26 H 1.09005 * 109.47351 * 239.99770 * 2 1 3 27 27 H 1.48505 * 109.99788 * 299.99818 * 3 2 1 28 28 H 1.48497 * 109.99724 * 61.31556 * 3 2 1 29 29 H 1.07997 * 125.56611 * 359.94287 * 5 4 2 30 30 H 0.96999 * 125.68082 * 180.02562 * 6 5 4 31 31 H 0.97005 * 120.00052 * 0.02562 * 10 8 7 32 32 H 1.08995 * 109.47241 * 64.77304 * 11 10 8 33 33 H 1.09006 * 109.47160 * 304.77523 * 11 10 8 34 34 H 1.08004 * 120.00165 * 0.02562 * 14 13 12 35 35 H 1.08002 * 119.99896 * 180.27561 * 15 14 13 36 36 H 1.08006 * 119.99825 * 179.83446 * 16 15 14 37 37 H 1.08003 * 120.00149 * 179.97438 * 17 16 15 38 38 H 1.07998 * 120.00118 * 359.97438 * 18 13 12 39 39 H 1.09004 * 113.61441 * 25.43280 * 19 12 11 40 40 H 1.09002 * 113.61286 * 156.32996 * 19 12 11 41 41 H 1.09003 * 113.61063 * 203.66298 * 23 12 11 42 42 H 1.08997 * 113.61570 * 334.56573 * 23 12 11 43 43 H 1.07995 * 126.45235 * 179.70798 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6330 -0.1498 2.2443 6 7 2.9046 -1.1028 3.1690 7 6 2.3686 -2.2963 2.7414 8 6 2.4372 -3.5800 3.4476 9 8 1.9211 -4.5696 2.9625 10 7 3.0716 -3.6636 4.6337 11 6 3.1406 -4.9458 5.3389 12 6 3.8041 -4.7430 6.7025 13 6 2.9879 -3.8774 7.6276 14 6 3.4623 -2.6372 8.0117 15 6 2.7116 -1.8414 8.8568 16 6 1.4907 -2.2898 9.3250 17 6 1.0187 -3.5323 8.9450 18 6 1.7674 -4.3262 8.0965 19 6 5.2817 -4.3261 6.6126 20 6 5.6231 -5.8255 6.6100 21 1 5.6489 -6.2657 5.6132 22 9 6.7504 -6.1449 7.3744 23 6 4.2936 -6.0493 7.3498 24 6 1.7612 -2.0668 1.5251 25 1 -0.3933 0.4418 0.7651 26 1 1.7924 -0.5139 -0.8900 27 1 1.5615 2.4679 -1.2086 28 1 1.5879 2.4585 1.2242 29 1 2.9283 0.8872 2.3057 30 1 3.3951 -0.9665 3.9947 31 1 3.4826 -2.8746 5.0206 32 1 3.7263 -5.6526 4.7513 33 1 2.1332 -5.3376 5.4798 34 1 4.4178 -2.2883 7.6486 35 1 3.0802 -0.8706 9.1534 36 1 0.9054 -1.6692 9.9874 37 1 0.0650 -3.8828 9.3112 38 1 1.3986 -5.2969 7.7995 39 1 5.5364 -3.8187 5.6822 40 1 5.6408 -3.7980 7.4960 41 1 4.3826 -5.9922 8.4347 42 1 3.7506 -6.9329 7.0146 43 1 1.2484 -2.7965 0.9160 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_10543058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:26:00 Heat of formation + Delta-G solvation = -15.129894 kcal Electronic energy + Delta-G solvation = -28039.919680 eV Core-core repulsion = 23967.512860 eV Total energy + Delta-G solvation = -4072.406820 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.59040 -42.50452 -41.54826 -40.05037 -38.77382 -37.79514 -35.51164 -32.62853 -32.06429 -31.88420 -30.92528 -28.68165 -27.15811 -26.38745 -25.15951 -23.73200 -23.21404 -22.53170 -21.28589 -20.78303 -20.43638 -19.48564 -18.42774 -17.67122 -17.44892 -17.23766 -16.77061 -16.63007 -16.48091 -16.08975 -15.99272 -15.70919 -15.53514 -15.45391 -15.00506 -14.88557 -14.58416 -14.44695 -14.31527 -14.24689 -13.85901 -13.67699 -13.56711 -13.44930 -13.38727 -12.54562 -12.45234 -12.44742 -12.22430 -11.82165 -11.80448 -11.41884 -11.35918 -11.26497 -10.47736 -10.34433 -9.96885 -9.86012 -9.68192 -9.29785 -4.83092 0.35142 0.37742 0.45742 1.40005 1.55346 1.68452 1.86912 2.08879 2.12296 2.25146 2.78569 3.10949 3.21673 3.40085 3.51571 3.56919 3.58003 3.80730 3.85633 3.98899 4.08312 4.09569 4.16160 4.18482 4.26249 4.35643 4.44813 4.57159 4.61643 4.63921 4.66336 4.69543 4.74633 4.83048 4.89992 4.92838 5.02335 5.06452 5.11194 5.18998 5.25393 5.54390 5.58134 5.60294 5.61331 5.72890 6.06339 6.30608 6.49025 6.63189 7.01258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.061 4.061 3 Si 0.788 3.212 4 C -0.223 4.223 5 C 0.060 3.940 6 N -0.515 5.515 7 C -0.069 4.069 8 C 0.589 3.411 9 O -0.574 6.574 10 N -0.709 5.709 11 C 0.147 3.853 12 C -0.042 4.042 13 C -0.072 4.072 14 C -0.121 4.121 15 C -0.123 4.123 16 C -0.134 4.134 17 C -0.131 4.131 18 C -0.124 4.124 19 C -0.145 4.145 20 C 0.056 3.944 21 H 0.124 0.876 22 F -0.223 7.223 23 C -0.140 4.140 24 C -0.103 4.103 25 H 0.384 0.616 26 H 0.108 0.892 27 H -0.314 1.314 28 H -0.267 1.267 29 H 0.213 0.787 30 H 0.436 0.564 31 H 0.409 0.591 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.062 5.834 4.336 8.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.169 4.169 3 Si 0.692 3.308 4 C -0.229 4.229 5 C -0.078 4.078 6 N -0.112 5.112 7 C -0.182 4.182 8 C 0.378 3.622 9 O -0.454 6.454 10 N -0.360 5.360 11 C 0.024 3.976 12 C -0.042 4.042 13 C -0.072 4.072 14 C -0.139 4.139 15 C -0.141 4.141 16 C -0.152 4.152 17 C -0.149 4.149 18 C -0.142 4.142 19 C -0.183 4.183 20 C 0.020 3.980 21 H 0.142 0.858 22 F -0.204 7.204 23 C -0.178 4.178 24 C -0.131 4.131 25 H 0.233 0.767 26 H 0.126 0.874 27 H -0.243 1.243 28 H -0.193 1.193 29 H 0.230 0.770 30 H 0.277 0.723 31 H 0.245 0.755 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.704 5.559 3.682 8.160 hybrid contribution -1.192 -0.288 0.998 1.581 sum 3.513 5.271 4.680 7.875 Atomic orbital electron populations 1.86573 1.19503 1.80539 1.49969 1.24761 0.82568 1.12243 0.97370 0.94268 0.89381 0.70418 0.76722 1.19862 1.08854 0.94220 0.99991 1.22372 1.00511 0.95832 0.89091 1.41851 1.42886 1.06494 1.20010 1.20102 1.11975 0.86711 0.99393 1.17199 0.77728 0.86577 0.80670 1.90858 1.48588 1.37875 1.68036 1.45555 1.56974 1.13109 1.20391 1.21150 1.01238 0.85305 0.89931 1.20567 0.93901 0.96681 0.93066 1.19485 0.94691 0.95043 0.97949 1.21320 1.00651 0.93513 0.98411 1.21449 0.94612 1.00644 0.97404 1.21460 0.97033 0.96378 1.00285 1.21382 1.00367 0.95038 0.98159 1.21140 0.94825 1.00256 0.97979 1.23776 0.93101 0.95977 1.05413 1.23352 0.81387 0.97838 0.95437 0.85840 1.92790 1.55271 1.94175 1.78172 1.23639 0.95210 0.97453 1.01505 1.21235 1.00359 0.96614 0.94847 0.76710 0.87383 1.24272 1.19307 0.77022 0.72330 0.75470 0.90186 0.91449 0.83638 0.84230 0.85181 0.85536 0.85984 0.88160 0.87396 0.88494 0.88740 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.70 12.88 -148.98 -1.92 -4.62 16 2 C -0.06 -0.01 3.02 71.24 0.22 0.21 16 3 Si 0.79 -3.70 30.60 68.60 2.10 -1.60 16 4 C -0.22 0.03 5.43 -20.12 -0.11 -0.08 16 5 C 0.06 -0.41 10.45 83.48 0.87 0.46 16 6 N -0.52 3.65 5.99 -183.63 -1.10 2.55 16 7 C -0.07 -0.13 7.06 40.35 0.28 0.15 16 8 C 0.59 2.79 7.79 86.45 0.67 3.47 16 9 O -0.57 -8.23 16.88 -4.32 -0.07 -8.31 16 10 N -0.71 2.36 5.18 -467.09 -2.42 -0.06 16 11 C 0.15 -0.45 4.84 86.38 0.42 -0.03 16 12 C -0.04 0.26 0.63 -52.40 -0.03 0.22 16 13 C -0.07 0.28 4.64 -19.87 -0.09 0.19 16 14 C -0.12 0.70 9.05 22.27 0.20 0.90 16 15 C -0.12 0.52 10.05 22.27 0.22 0.75 16 16 C -0.13 0.25 10.05 22.27 0.22 0.47 16 17 C -0.13 0.06 10.05 22.27 0.22 0.29 16 18 C -0.12 0.12 9.35 22.27 0.21 0.33 16 19 C -0.15 1.15 5.98 31.12 0.19 1.34 16 20 C 0.06 -0.23 5.32 31.12 0.17 -0.07 16 21 H 0.12 -0.83 7.61 -2.39 -0.02 -0.85 16 22 F -0.22 -0.66 17.41 44.97 0.78 0.12 16 23 C -0.14 0.67 6.99 31.12 0.22 0.89 16 24 C -0.10 -0.59 10.59 22.57 0.24 -0.35 16 25 H 0.38 -0.58 8.70 -74.05 -0.64 -1.22 16 26 H 0.11 0.07 7.96 -2.38 -0.02 0.05 16 27 H -0.31 -1.51 7.11 99.48 0.71 -0.80 16 28 H -0.27 0.92 7.11 99.48 0.71 1.62 16 29 H 0.21 -3.08 6.21 -2.91 -0.02 -3.10 16 30 H 0.44 -6.33 8.19 -92.71 -0.76 -7.09 16 31 H 0.41 -3.82 7.24 -92.70 -0.67 -4.49 16 32 H 0.08 -0.24 7.31 -2.39 -0.02 -0.26 16 33 H 0.07 0.04 7.97 -2.38 -0.02 0.02 16 34 H 0.15 -1.57 6.43 -2.91 -0.02 -1.59 16 35 H 0.14 -1.12 8.06 -2.91 -0.02 -1.14 16 36 H 0.13 -0.56 8.06 -2.91 -0.02 -0.58 16 37 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 38 H 0.12 -0.23 8.06 -2.91 -0.02 -0.25 16 39 H 0.10 -1.09 7.81 -2.38 -0.02 -1.11 16 40 H 0.11 -0.87 6.82 -2.39 -0.02 -0.88 16 41 H 0.10 -0.30 8.10 -2.39 -0.02 -0.31 16 42 H 0.09 -0.56 8.10 -2.39 -0.02 -0.58 16 43 H 0.12 1.24 8.06 -2.91 -0.02 1.22 16 Total: 0.00 -24.98 363.17 0.53 -24.45 By element: Atomic # 1 Polarization: -20.71 SS G_CDS: -0.96 Total: -21.67 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 4.12 Total: 9.14 kcal Atomic # 7 Polarization: 6.00 SS G_CDS: -3.52 Total: 2.49 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -1.99 Total: -12.93 kcal Atomic # 9 Polarization: -0.66 SS G_CDS: 0.78 Total: 0.12 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 2.10 Total: -1.60 kcal Total: -24.98 0.53 -24.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_10543058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.323 kcal (2) G-P(sol) polarization free energy of solvation -24.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds