Wall clock time and date at job start Sat Mar 6 2021 21:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37650 * 125.68010 * 2 1 4 4 C 1.46676 * 126.23192 * 0.02562 * 3 2 1 5 5 O 1.21695 * 119.99656 * 185.99764 * 4 3 2 6 6 N 1.34773 * 119.99848 * 6.00284 * 4 3 2 7 7 C 1.46505 * 119.99861 * 184.14651 * 6 4 3 8 8 C 1.53001 * 109.47424 * 272.00255 * 7 6 4 9 9 C 1.50701 * 112.84539 * 313.88523 * 8 7 6 10 10 C 1.38236 * 119.99952 * 247.19859 * 9 8 7 11 11 C 1.38233 * 120.00050 * 179.79122 * 10 9 8 12 12 C 1.38239 * 119.99958 * 0.44050 * 11 10 9 13 13 C 1.38238 * 119.99976 * 359.81356 * 12 11 10 14 14 C 1.38237 * 119.99952 * 359.97438 * 13 12 11 15 15 C 1.53781 * 113.61517 * 182.69071 * 8 7 6 16 16 C 1.53781 * 87.07784 * 270.88182 * 15 8 7 17 17 H 1.09003 * 113.61578 * 89.12146 * 16 15 8 18 18 F 1.39904 * 113.61262 * 219.93271 * 16 15 8 19 19 C 1.53777 * 87.08480 * 334.56639 * 16 15 8 20 20 C 1.37871 * 107.52955 * 179.87915 * 3 2 1 21 21 C 1.39835 * 107.08985 * 0.37952 * 20 3 2 22 22 C 1.35451 * 107.86059 * 359.76368 * 21 20 3 23 23 C 1.50706 * 125.56222 * 179.97438 * 22 21 20 24 24 O 1.42897 * 109.47414 * 210.00093 * 23 22 21 25 25 Si 1.86303 * 109.46836 * 330.00085 * 23 22 21 26 26 H 1.09007 * 109.46755 * 276.18835 * 1 2 3 27 27 H 1.09003 * 109.47090 * 36.18796 * 1 2 3 28 28 H 1.09001 * 109.47431 * 156.19155 * 1 2 3 29 29 H 0.96993 * 120.00399 * 4.14658 * 6 4 3 30 30 H 1.09004 * 109.46547 * 32.00114 * 7 6 4 31 31 H 1.08993 * 109.47070 * 151.99693 * 7 6 4 32 32 H 1.08001 * 119.99634 * 0.02562 * 10 9 8 33 33 H 1.07997 * 120.00061 * 180.27834 * 11 10 9 34 34 H 1.07994 * 120.00110 * 179.83553 * 12 11 10 35 35 H 1.07997 * 120.00215 * 179.97438 * 13 12 11 36 36 H 1.08003 * 120.00061 * 179.97438 * 14 13 12 37 37 H 1.09005 * 113.61277 * 25.42916 * 15 8 7 38 38 H 1.08995 * 113.61249 * 156.33321 * 15 8 7 39 39 H 1.08998 * 113.61781 * 270.88774 * 19 16 15 40 40 H 1.08999 * 113.61318 * 139.98189 * 19 16 15 41 41 H 1.07999 * 126.45267 * 180.11523 * 20 3 2 42 42 H 1.08000 * 126.06908 * 179.76261 * 21 20 3 43 43 H 1.08997 * 109.47119 * 89.99727 * 23 22 21 44 44 H 0.96704 * 113.99916 * 59.99638 * 24 23 22 45 45 H 1.48506 * 109.99589 * 179.97438 * 25 23 22 46 46 H 1.48495 * 110.00093 * 301.31762 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2679 1.1181 0.0000 4 6 1.8125 2.5124 0.0005 5 8 2.6199 3.4162 -0.1097 6 7 0.4999 2.7925 0.1231 7 6 0.0352 4.1789 0.0326 8 6 0.0855 4.8253 1.4185 9 6 -0.4979 3.9471 2.4952 10 6 -1.6668 4.3190 3.1325 11 6 -2.2043 3.5113 4.1172 12 6 -1.5680 2.3362 4.4710 13 6 -0.3962 1.9669 3.8373 14 6 0.1390 2.7724 2.8496 15 6 -0.4461 6.2681 1.4450 16 6 0.9887 6.7190 1.1239 17 1 1.1997 6.7764 0.0561 18 9 1.3836 7.8677 1.8181 19 6 1.4624 5.4095 1.7761 20 6 3.5780 0.6886 0.0028 21 6 3.5521 -0.7095 -0.0044 22 6 2.2554 -1.1010 -0.0060 23 6 1.7707 -2.5279 -0.0137 24 8 0.5124 -2.6000 -0.6871 25 14 3.0110 -3.6002 -0.8985 26 1 -0.3633 0.1108 1.0218 27 1 -0.3633 0.8294 -0.6068 28 1 -0.3634 -0.9402 -0.4148 29 1 -0.1371 2.0762 0.2713 30 1 0.6783 4.7337 -0.6507 31 1 -0.9893 4.1952 -0.3389 32 1 -2.1622 5.2387 2.8584 33 1 -3.1200 3.7996 4.6120 34 1 -1.9864 1.7065 5.2421 35 1 0.1012 1.0490 4.1140 36 1 1.0547 2.4841 2.3548 37 1 -1.1601 6.4850 0.6504 38 1 -0.7945 6.5870 2.4273 39 1 1.6357 5.4936 2.8489 40 1 2.2891 4.9333 1.2489 41 1 4.4583 1.3142 0.0053 42 1 4.4132 -1.3614 -0.0081 43 1 1.6544 -2.8777 1.0121 44 1 0.5412 -2.3034 -1.6071 45 1 2.5448 -5.0102 -0.9124 46 1 3.2023 -3.1143 -2.2886 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_10803936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:26:06 Heat of formation + Delta-G solvation = 13.237460 kcal Electronic energy + Delta-G solvation = -31560.296919 eV Core-core repulsion = 27333.582580 eV Total energy + Delta-G solvation = -4226.714338 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.60943 -42.74395 -41.62078 -39.93585 -38.68288 -37.93974 -35.90996 -33.76780 -31.97947 -31.85924 -31.50372 -28.88583 -27.70921 -27.09932 -26.42120 -24.97128 -23.31172 -22.95821 -22.49339 -21.56659 -20.90134 -19.81957 -18.87894 -18.36503 -18.30627 -17.62416 -17.02663 -16.82333 -16.59721 -16.51807 -16.36670 -15.95801 -15.74747 -15.52516 -15.38965 -15.32409 -15.04793 -14.64185 -14.35571 -14.31861 -14.20681 -14.09355 -13.77618 -13.65827 -13.55950 -13.33828 -13.07848 -12.89613 -12.75132 -12.38182 -12.33523 -12.21749 -11.95579 -11.89462 -11.41027 -11.27464 -11.16229 -10.84832 -10.26479 -9.86114 -9.75051 -9.66472 -9.11744 -4.85459 0.29747 0.38181 0.43171 1.17143 1.60535 1.72591 1.79327 2.02149 2.07089 2.29220 2.78642 3.13546 3.18261 3.25932 3.41858 3.48601 3.61131 3.68542 3.72963 3.82519 3.88877 4.06032 4.08242 4.18691 4.22276 4.24645 4.33715 4.43548 4.45787 4.54056 4.55551 4.62268 4.65960 4.68077 4.70702 4.74492 4.90621 4.97676 5.06047 5.08445 5.09530 5.20096 5.25670 5.27800 5.54365 5.58702 5.63872 5.67191 5.90610 6.04701 6.10703 6.30316 6.36782 7.05222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.410 5.410 3 C -0.080 4.080 4 C 0.590 3.410 5 O -0.557 6.557 6 N -0.720 5.720 7 C 0.134 3.866 8 C -0.049 4.049 9 C -0.066 4.066 10 C -0.121 4.121 11 C -0.124 4.124 12 C -0.128 4.128 13 C -0.128 4.128 14 C -0.119 4.119 15 C -0.136 4.136 16 C 0.057 3.943 17 H 0.123 0.877 18 F -0.226 7.226 19 C -0.159 4.159 20 C -0.121 4.121 21 C -0.206 4.206 22 C 0.021 3.979 23 C -0.055 4.055 24 O -0.540 6.540 25 Si 0.796 3.204 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.408 0.592 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.144 0.856 42 H 0.178 0.822 43 H 0.138 0.862 44 H 0.388 0.612 45 H -0.294 1.294 46 H -0.293 1.293 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.687 -4.975 -0.648 6.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.085 5.085 3 C -0.193 4.193 4 C 0.379 3.621 5 O -0.436 6.436 6 N -0.375 5.375 7 C 0.011 3.989 8 C -0.050 4.050 9 C -0.066 4.066 10 C -0.138 4.138 11 C -0.142 4.142 12 C -0.146 4.146 13 C -0.146 4.146 14 C -0.137 4.137 15 C -0.174 4.174 16 C 0.021 3.979 17 H 0.140 0.860 18 F -0.207 7.207 19 C -0.197 4.197 20 C -0.148 4.148 21 C -0.229 4.229 22 C -0.097 4.097 23 C -0.163 4.163 24 O -0.348 6.348 25 Si 0.700 3.300 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.150 0.850 29 H 0.249 0.751 30 H 0.105 0.895 31 H 0.136 0.864 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.161 0.839 42 H 0.195 0.805 43 H 0.156 0.844 44 H 0.238 0.762 45 H -0.221 1.221 46 H -0.220 1.220 Dipole moment (debyes) X Y Z Total from point charges -4.607 -4.995 -0.823 6.845 hybrid contribution -0.769 0.447 -0.297 0.938 sum -5.377 -4.549 -1.120 7.131 Atomic orbital electron populations 1.22959 0.75663 1.07642 1.04805 1.43986 1.06928 1.04312 1.53303 1.20466 0.91767 0.86353 1.20672 1.17191 0.82713 0.86617 0.75596 1.90779 1.54477 1.46751 1.51618 1.46322 1.07409 1.10410 1.73399 1.21430 1.02254 0.81436 0.93827 1.20909 0.95669 0.93572 0.94849 1.19476 0.95396 0.94834 0.96935 1.21310 0.95563 1.00448 0.96510 1.21443 1.00569 0.94667 0.97482 1.21419 0.95654 0.97403 1.00109 1.21312 0.96616 1.00202 0.96480 1.21038 0.99642 0.95033 0.98035 1.23696 0.95934 0.92901 1.04901 1.23360 0.97294 0.80251 0.96972 0.85977 1.92768 1.92361 1.53801 1.81794 1.23816 0.98653 0.95890 1.01303 1.21468 0.94812 0.95684 1.02817 1.20937 0.96110 0.94689 1.11191 1.21297 0.91044 0.89505 1.07879 1.25035 0.93068 0.93495 1.04732 1.86517 1.30089 1.88038 1.30198 0.93209 0.83680 0.73909 0.79212 0.89519 0.89009 0.85007 0.75050 0.89539 0.86382 0.84344 0.84425 0.84775 0.85647 0.87690 0.87084 0.88320 0.90833 0.89362 0.83866 0.80490 0.84440 0.76152 1.22120 1.21996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.20 9.27 127.77 1.18 0.99 16 2 N -0.41 0.46 3.16 -519.69 -1.64 -1.18 16 3 C -0.08 -0.32 6.88 40.35 0.28 -0.04 16 4 C 0.59 3.04 6.47 86.45 0.56 3.60 16 5 O -0.56 -6.57 13.93 -4.33 -0.06 -6.63 16 6 N -0.72 1.05 3.00 -467.08 -1.40 -0.35 16 7 C 0.13 -0.42 5.45 86.38 0.47 0.06 16 8 C -0.05 0.04 0.96 -52.40 -0.05 -0.01 16 9 C -0.07 -0.02 4.79 -19.86 -0.10 -0.12 16 10 C -0.12 0.12 9.04 22.27 0.20 0.32 16 11 C -0.12 0.14 10.05 22.27 0.22 0.36 16 12 C -0.13 0.07 10.05 22.27 0.22 0.29 16 13 C -0.13 -0.09 10.05 22.27 0.22 0.13 16 14 C -0.12 -0.23 8.15 22.27 0.18 -0.05 16 15 C -0.14 0.33 6.19 31.12 0.19 0.52 16 16 C 0.06 0.16 5.32 31.12 0.17 0.33 16 17 H 0.12 -0.01 7.68 -2.39 -0.02 -0.02 16 18 F -0.23 -2.17 17.41 44.97 0.78 -1.38 16 19 C -0.16 -0.81 6.93 31.12 0.22 -0.59 16 20 C -0.12 -0.53 10.66 22.57 0.24 -0.29 16 21 C -0.21 0.15 9.37 22.01 0.21 0.35 16 22 C 0.02 -0.04 6.14 41.34 0.25 0.21 16 23 C -0.05 0.30 2.99 71.24 0.21 0.51 16 24 O -0.54 2.72 9.88 -148.98 -1.47 1.25 16 25 Si 0.80 -4.27 31.10 68.60 2.13 -2.14 16 26 H 0.09 -0.64 8.07 -2.38 -0.02 -0.66 16 27 H 0.09 -0.80 6.02 -2.39 -0.01 -0.81 16 28 H 0.13 -1.09 4.87 -2.39 -0.01 -1.10 16 29 H 0.41 -2.03 4.40 -92.71 -0.41 -2.44 16 30 H 0.09 -0.09 6.76 -2.39 -0.02 -0.11 16 31 H 0.12 -1.05 8.14 -2.39 -0.02 -1.07 16 32 H 0.14 -0.60 6.48 -2.91 -0.02 -0.62 16 33 H 0.14 -0.63 8.06 -2.91 -0.02 -0.65 16 34 H 0.13 -0.49 8.06 -2.91 -0.02 -0.52 16 35 H 0.13 -0.16 8.06 -2.91 -0.02 -0.18 16 36 H 0.11 0.46 5.96 -2.91 -0.02 0.44 16 37 H 0.11 -0.82 8.10 -2.38 -0.02 -0.84 16 38 H 0.10 -0.15 6.87 -2.39 -0.02 -0.16 16 39 H 0.07 0.59 8.10 -2.39 -0.02 0.57 16 40 H 0.09 0.83 5.31 -2.39 -0.01 0.82 16 41 H 0.14 0.72 8.06 -2.91 -0.02 0.70 16 42 H 0.18 -1.19 6.85 -2.91 -0.02 -1.21 16 43 H 0.14 -1.04 7.96 -2.39 -0.02 -1.06 16 44 H 0.39 -3.67 8.50 -74.05 -0.63 -4.30 16 45 H -0.29 -0.42 7.11 99.48 0.71 0.28 16 46 H -0.29 -0.27 7.11 99.48 0.71 0.44 16 Total: 0.00 -19.64 363.77 3.27 -16.37 By element: Atomic # 1 Polarization: -12.55 SS G_CDS: 0.04 Total: -12.51 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 4.89 Total: 6.57 kcal Atomic # 7 Polarization: 1.51 SS G_CDS: -3.04 Total: -1.53 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -1.53 Total: -5.38 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.78 Total: -1.38 kcal Atomic # 14 Polarization: -4.27 SS G_CDS: 2.13 Total: -2.14 kcal Total: -19.64 3.27 -16.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_10803936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.603 kcal (2) G-P(sol) polarization free energy of solvation -19.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds