Wall clock time and date at job start Sat Mar 6 2021 21:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86306 * 109.47188 * 2 1 4 4 C 1.50700 * 109.47125 * 120.00090 * 2 1 3 5 5 C 1.36448 * 120.29729 * 119.99979 * 4 2 1 6 6 C 1.40093 * 119.25383 * 179.97438 * 5 4 2 7 7 C 1.40853 * 132.86453 * 180.02562 * 6 5 4 8 8 C 1.46574 * 126.57870 * 359.97438 * 7 6 5 9 9 O 1.21720 * 119.99928 * 359.71464 * 8 7 6 10 10 N 1.34775 * 119.99735 * 179.72031 * 8 7 6 11 11 C 1.46502 * 119.99787 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47142 * 184.61035 * 11 10 8 13 13 C 1.50703 * 112.84658 * 62.70656 * 12 11 10 14 14 C 1.38236 * 120.00047 * 55.19702 * 13 12 11 15 15 C 1.38236 * 119.99879 * 179.72518 * 14 13 12 16 16 C 1.38235 * 119.99979 * 0.27729 * 15 14 13 17 17 C 1.38228 * 120.00213 * 359.95483 * 16 15 14 18 18 C 1.38234 * 119.99940 * 235.40997 * 13 12 11 19 19 C 1.53784 * 113.62000 * 291.51103 * 12 11 10 20 20 C 1.53783 * 87.07934 * 270.79843 * 19 12 11 21 21 H 1.09000 * 113.61572 * 89.10973 * 20 19 12 22 22 F 1.39896 * 113.61406 * 219.93065 * 20 19 12 23 23 C 1.53784 * 87.08325 * 334.56440 * 20 19 12 24 24 C 1.40553 * 106.84319 * 179.73584 * 7 6 5 25 25 N 1.30742 * 108.73941 * 0.25769 * 24 7 6 26 26 N 1.36576 * 120.23332 * 0.17567 * 6 5 4 27 27 C 1.36240 * 120.08058 * 0.02562 * 26 6 5 28 28 C 1.35197 * 120.70375 * 359.59280 * 27 26 6 29 29 H 0.96699 * 114.00143 * 60.00132 * 1 2 3 30 30 H 1.08995 * 109.47077 * 239.99904 * 2 1 3 31 31 H 1.48499 * 109.99699 * 59.99909 * 3 2 1 32 32 H 1.48500 * 109.99714 * 181.31839 * 3 2 1 33 33 H 1.07998 * 120.37361 * 0.02562 * 5 4 2 34 34 H 0.97000 * 120.00202 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.46948 * 64.61365 * 11 10 8 36 36 H 1.09002 * 109.47112 * 304.61317 * 11 10 8 37 37 H 1.07997 * 119.99845 * 359.97438 * 14 13 12 38 38 H 1.08003 * 119.99875 * 180.25417 * 15 14 13 39 39 H 1.08002 * 120.00015 * 179.97438 * 16 15 14 40 40 H 1.08000 * 120.00565 * 179.97438 * 17 16 15 41 41 H 1.07997 * 120.00152 * 0.04609 * 18 13 12 42 42 H 1.09003 * 113.60848 * 25.34259 * 19 12 11 43 43 H 1.08993 * 113.61600 * 156.24587 * 19 12 11 44 44 H 1.08997 * 113.61476 * 270.88631 * 23 20 19 45 45 H 1.08998 * 113.61698 * 139.97793 * 23 20 19 46 46 H 1.07999 * 125.63325 * 180.29338 * 24 7 6 47 47 H 1.07993 * 119.65215 * 180.27221 * 27 26 6 48 48 H 1.07997 * 119.83961 * 180.21470 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.7161 -1.8203 1.1123 6 6 3.1714 -2.4633 2.2707 7 6 3.9759 -3.6000 2.4823 8 6 4.5763 -4.4497 1.4499 9 8 4.3921 -4.1997 0.2730 10 7 5.3324 -5.5078 1.8038 11 6 5.9330 -6.3567 0.7719 12 6 6.6386 -7.5420 1.4337 13 6 5.6930 -8.4358 2.1941 14 6 4.5933 -8.9797 1.5570 15 6 3.7291 -9.8041 2.2530 16 6 3.9613 -10.0798 3.5875 17 6 5.0582 -9.5321 4.2258 18 6 5.9228 -8.7080 3.5297 19 6 7.8896 -7.1451 2.2352 20 6 8.6866 -7.3317 0.9334 21 1 8.7446 -6.4299 0.3238 22 9 9.9316 -7.9415 1.1210 23 6 7.5822 -8.3053 0.4892 24 6 4.0970 -3.7599 3.8735 25 7 3.4221 -2.8096 4.4658 26 7 2.8289 -1.9842 3.5029 27 6 2.0414 -0.8777 3.6107 28 6 1.5968 -0.2367 2.5065 29 1 -0.3933 0.4417 -0.7650 30 1 1.7923 -0.5138 -0.8899 31 1 1.5614 2.4679 1.2085 32 1 3.5346 1.7702 -0.0321 33 1 2.9840 -2.1984 0.1368 34 1 5.4794 -5.7068 2.7417 35 1 6.6568 -5.7762 0.1999 36 1 5.1533 -6.7244 0.1047 37 1 4.4117 -8.7639 0.5145 38 1 2.8722 -10.2324 1.7542 39 1 3.2858 -10.7236 4.1314 40 1 5.2394 -9.7472 5.2685 41 1 6.7795 -8.2797 4.0285 42 1 7.8709 -6.1152 2.5920 43 1 8.1534 -7.8595 3.0150 44 1 7.7621 -9.3369 0.7916 45 1 7.3154 -8.2121 -0.5635 46 1 4.6558 -4.5387 4.3710 47 1 1.7784 -0.5023 4.5885 48 1 0.9761 0.6413 2.6081 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_11618758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:26:09 Heat of formation + Delta-G solvation = 50.354459 kcal Electronic energy + Delta-G solvation = -34614.952786 eV Core-core repulsion = 29939.743629 eV Total energy + Delta-G solvation = -4675.209157 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.148 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -48.57495 -43.42697 -41.60366 -40.16328 -39.21622 -38.72228 -37.28202 -35.31518 -34.35904 -32.28709 -32.07648 -31.84655 -30.72308 -28.54754 -27.26209 -26.96898 -25.33663 -24.75062 -23.67086 -23.24369 -22.92227 -22.45721 -21.31200 -19.99646 -19.16962 -18.52671 -18.35387 -18.01845 -17.63869 -17.37200 -17.06828 -16.97183 -16.64981 -16.54960 -16.09364 -15.97622 -15.89377 -15.59788 -15.51518 -15.49271 -15.01075 -14.59663 -14.57956 -14.39898 -14.31102 -14.27156 -13.94801 -13.65662 -13.52982 -13.42445 -13.34625 -13.11186 -12.60056 -12.49944 -12.44984 -12.19346 -12.17036 -11.98815 -11.74196 -11.71661 -11.33708 -11.25515 -11.06367 -10.85582 -10.24354 -10.16192 -9.83158 -9.64305 -8.91390 -5.01406 -0.69472 -0.25580 0.40260 0.48848 0.89607 0.93063 1.22425 1.64054 1.90636 1.96989 2.10169 2.39997 2.81360 2.94308 3.08239 3.15659 3.28127 3.40015 3.43057 3.57936 3.59644 3.63085 3.69270 3.79562 3.87590 3.90241 4.09548 4.11674 4.12908 4.21663 4.24870 4.27291 4.32770 4.47186 4.49525 4.60050 4.64052 4.65747 4.66730 4.73569 4.74788 4.88023 4.96348 4.99482 5.03374 5.09245 5.14069 5.15981 5.28632 5.37465 5.52400 5.57563 5.63882 5.64404 6.09089 6.17218 6.50778 6.85949 7.20808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.083 4.083 3 Si 0.803 3.197 4 C -0.032 4.032 5 C -0.119 4.119 6 C 0.149 3.851 7 C -0.336 4.336 8 C 0.601 3.399 9 O -0.587 6.587 10 N -0.708 5.708 11 C 0.150 3.850 12 C -0.041 4.041 13 C -0.070 4.070 14 C -0.121 4.121 15 C -0.131 4.131 16 C -0.133 4.133 17 C -0.124 4.124 18 C -0.122 4.122 19 C -0.149 4.149 20 C 0.056 3.944 21 H 0.124 0.876 22 F -0.223 7.223 23 C -0.137 4.137 24 C 0.131 3.869 25 N -0.336 5.336 26 N -0.275 5.275 27 C 0.109 3.891 28 C -0.151 4.151 29 H 0.409 0.591 30 H 0.093 0.907 31 H -0.273 1.273 32 H -0.305 1.305 33 H 0.156 0.844 34 H 0.410 0.590 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.233 0.767 47 H 0.205 0.795 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.339 3.234 -0.667 4.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.191 4.191 3 Si 0.706 3.294 4 C -0.038 4.038 5 C -0.139 4.139 6 C 0.028 3.972 7 C -0.351 4.351 8 C 0.391 3.609 9 O -0.469 6.469 10 N -0.359 5.359 11 C 0.027 3.973 12 C -0.042 4.042 13 C -0.070 4.070 14 C -0.139 4.139 15 C -0.149 4.149 16 C -0.151 4.151 17 C -0.142 4.142 18 C -0.140 4.140 19 C -0.187 4.187 20 C 0.020 3.980 21 H 0.141 0.859 22 F -0.204 7.204 23 C -0.175 4.175 24 C -0.050 4.050 25 N -0.157 5.157 26 N -0.039 5.039 27 C -0.016 4.016 28 C -0.172 4.172 29 H 0.261 0.739 30 H 0.111 0.889 31 H -0.199 1.199 32 H -0.233 1.233 33 H 0.174 0.826 34 H 0.246 0.754 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.161 0.839 42 H 0.116 0.884 43 H 0.126 0.874 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.249 0.751 47 H 0.222 0.778 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.166 4.047 0.712 4.645 hybrid contribution 0.389 -1.348 -0.150 1.411 sum -1.777 2.700 0.562 3.280 Atomic orbital electron populations 1.86423 1.16016 1.82619 1.51681 1.24888 0.86825 1.11479 0.95875 0.94244 0.76998 0.72807 0.85371 1.19875 0.94813 0.93088 0.95992 1.20708 1.00073 0.95208 0.97866 1.19547 0.96151 0.94817 0.86707 1.19717 1.16976 1.04026 0.94332 1.16872 0.77400 0.79862 0.86753 1.90755 1.63194 1.73100 1.19887 1.45407 1.51574 1.28071 1.10897 1.21100 0.97084 0.89319 0.89811 1.20572 0.92499 0.94116 0.96985 1.19457 0.95350 0.98065 0.94128 1.21110 0.94767 0.97674 1.00303 1.21367 0.99836 0.98566 0.95111 1.21440 0.98327 1.00267 0.95069 1.21428 0.94728 0.97221 1.00857 1.21350 1.00179 0.98809 0.93662 1.23815 0.93083 1.04627 0.97142 1.23352 0.77618 0.97203 0.99780 0.85862 1.92786 1.46150 1.85204 1.96285 1.23623 0.93306 0.99558 1.01057 1.24581 0.93523 0.95585 0.91293 1.77568 1.19218 1.07455 1.11432 1.46298 1.32283 1.19750 1.05542 1.22176 0.91493 0.84604 1.03372 1.21168 1.02954 1.03037 0.90026 0.73873 0.88938 1.19929 1.23266 0.82609 0.75366 0.90461 0.91306 0.86003 0.85477 0.85182 0.84521 0.83946 0.88450 0.87359 0.88516 0.88612 0.75096 0.77807 0.80019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.96 12.76 -148.98 -1.90 0.06 16 2 C -0.08 0.22 2.81 71.24 0.20 0.42 16 3 Si 0.80 -4.08 31.97 68.60 2.19 -1.88 16 4 C -0.03 -0.11 4.53 -19.81 -0.09 -0.20 16 5 C -0.12 -0.92 9.35 22.30 0.21 -0.71 16 6 C 0.15 1.42 6.76 39.50 0.27 1.69 16 7 C -0.34 -2.57 6.17 -19.90 -0.12 -2.70 16 8 C 0.60 4.73 7.78 86.42 0.67 5.41 16 9 O -0.59 -8.57 15.70 -4.41 -0.07 -8.63 16 10 N -0.71 -0.22 5.24 -467.16 -2.45 -2.67 16 11 C 0.15 -0.15 4.73 86.38 0.41 0.26 16 12 C -0.04 0.16 0.68 -52.40 -0.04 0.12 16 13 C -0.07 0.10 4.60 -19.86 -0.09 0.01 16 14 C -0.12 -0.11 9.31 22.27 0.21 0.10 16 15 C -0.13 -0.18 10.05 22.27 0.22 0.05 16 16 C -0.13 -0.06 10.05 22.27 0.22 0.16 16 17 C -0.12 0.14 10.05 22.27 0.22 0.37 16 18 C -0.12 0.29 9.14 22.27 0.20 0.50 16 19 C -0.15 0.76 6.30 31.12 0.20 0.95 16 20 C 0.06 -0.13 5.32 31.12 0.17 0.04 16 21 H 0.12 -0.60 7.60 -2.39 -0.02 -0.62 16 22 F -0.22 -1.02 17.41 44.97 0.78 -0.24 16 23 C -0.14 0.44 7.12 31.12 0.22 0.66 16 24 C 0.13 0.43 11.44 85.42 0.98 1.41 16 25 N -0.34 -2.52 12.57 -56.62 -0.71 -3.24 16 26 N -0.27 -2.09 3.86 -187.28 -0.72 -2.82 16 27 C 0.11 0.22 11.18 83.31 0.93 1.15 16 28 C -0.15 -0.16 8.67 22.04 0.19 0.03 16 29 H 0.41 -5.73 8.74 -74.06 -0.65 -6.38 16 30 H 0.09 -0.44 7.71 -2.39 -0.02 -0.46 16 31 H -0.27 0.27 7.07 99.48 0.70 0.97 16 32 H -0.30 -0.97 7.11 99.48 0.71 -0.27 16 33 H 0.16 1.32 7.01 -2.91 -0.02 1.30 16 34 H 0.41 -1.77 7.16 -92.71 -0.66 -2.43 16 35 H 0.08 -0.09 7.31 -2.39 -0.02 -0.11 16 36 H 0.07 0.12 7.37 -2.39 -0.02 0.10 16 37 H 0.12 -0.01 7.48 -2.91 -0.02 -0.03 16 38 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 39 H 0.13 -0.28 8.06 -2.91 -0.02 -0.31 16 40 H 0.14 -0.62 8.06 -2.91 -0.02 -0.64 16 41 H 0.14 -0.90 5.95 -2.91 -0.02 -0.92 16 42 H 0.10 -0.68 8.04 -2.39 -0.02 -0.70 16 43 H 0.11 -0.58 6.23 -2.39 -0.01 -0.60 16 44 H 0.10 -0.15 8.09 -2.39 -0.02 -0.17 16 45 H 0.10 -0.45 8.10 -2.39 -0.02 -0.47 16 46 H 0.23 -1.42 7.46 -2.91 -0.02 -1.44 16 47 H 0.21 -0.95 8.06 -2.91 -0.02 -0.97 16 48 H 0.18 -0.66 7.52 -2.91 -0.02 -0.69 16 Total: 0.00 -26.70 403.69 2.06 -24.64 By element: Atomic # 1 Polarization: -14.68 SS G_CDS: -0.24 Total: -14.93 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 5.18 Total: 9.71 kcal Atomic # 7 Polarization: -4.84 SS G_CDS: -3.88 Total: -8.72 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -1.97 Total: -8.58 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.78 Total: -0.24 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.19 Total: -1.88 kcal Total: -26.70 2.06 -24.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_11618758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.993 kcal (2) G-P(sol) polarization free energy of solvation -26.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds