Wall clock time and date at job start Sat Mar 6 2021 21:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.46897 * 2 1 4 4 C 1.50697 * 109.47223 * 239.99906 * 2 1 3 5 5 C 1.37851 * 119.89106 * 299.99817 * 4 2 1 6 6 C 1.39658 * 119.88248 * 179.97438 * 5 4 2 7 7 C 1.47695 * 120.17105 * 180.02562 * 6 5 4 8 8 O 1.21565 * 119.99848 * 179.97438 * 7 6 5 9 9 N 1.34780 * 119.99764 * 0.02562 * 7 6 5 10 10 C 1.46496 * 119.99938 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47149 * 179.02877 * 10 9 7 12 12 C 1.50701 * 112.84926 * 66.14255 * 11 10 9 13 13 C 1.38232 * 119.99993 * 245.83297 * 12 11 10 14 14 C 1.38235 * 120.00318 * 179.76724 * 13 12 11 15 15 C 1.38240 * 119.99386 * 0.47801 * 14 13 12 16 16 C 1.38232 * 120.00281 * 359.79556 * 15 14 13 17 17 C 1.38233 * 119.99897 * 359.95301 * 16 15 14 18 18 C 1.53777 * 113.61601 * 294.94345 * 11 10 9 19 19 C 1.53780 * 87.08199 * 270.88408 * 18 11 10 20 20 H 1.09003 * 113.61527 * 89.11647 * 19 18 11 21 21 F 1.39899 * 113.61511 * 219.93009 * 19 18 11 22 22 C 1.53776 * 87.08154 * 334.56990 * 19 18 11 23 23 C 1.39827 * 119.66345 * 0.02562 * 6 5 4 24 24 F 1.35095 * 120.11051 * 180.02562 * 23 6 5 25 25 C 1.38318 * 119.78103 * 359.97438 * 23 6 5 26 26 C 1.38210 * 120.11420 * 359.75264 * 25 23 6 27 27 H 0.96694 * 114.00220 * 59.99924 * 1 2 3 28 28 H 1.09007 * 109.47101 * 119.99461 * 2 1 3 29 29 H 1.48503 * 110.00180 * 298.68027 * 3 2 1 30 30 H 1.48502 * 110.00323 * 60.00218 * 3 2 1 31 31 H 1.08007 * 120.05969 * 359.96031 * 5 4 2 32 32 H 0.97000 * 120.00250 * 359.97438 * 9 7 6 33 33 H 1.09006 * 109.46946 * 299.03162 * 10 9 7 34 34 H 1.09001 * 109.47048 * 59.02688 * 10 9 7 35 35 H 1.08007 * 119.99665 * 359.97438 * 13 12 11 36 36 H 1.07988 * 120.00561 * 180.25092 * 14 13 12 37 37 H 1.08005 * 119.99924 * 179.76718 * 15 14 13 38 38 H 1.07998 * 120.00203 * 179.97438 * 16 15 14 39 39 H 1.08007 * 119.99600 * 179.97438 * 17 16 15 40 40 H 1.09000 * 113.61026 * 25.43069 * 18 11 10 41 41 H 1.08994 * 113.61227 * 156.25121 * 18 11 10 42 42 H 1.09007 * 113.61203 * 270.88157 * 22 19 18 43 43 H 1.08997 * 113.61832 * 139.98558 * 22 19 18 44 44 H 1.08001 * 119.94570 * 180.02562 * 25 23 6 45 45 H 1.08006 * 119.82764 * 180.27393 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.5970 -2.0302 -1.4463 6 6 2.0622 -2.6883 -2.5869 7 6 1.7074 -4.1021 -2.8248 8 8 2.1137 -4.6717 -3.8190 9 7 0.9323 -4.7604 -1.9402 10 6 0.5799 -6.1626 -2.1765 11 6 -0.2802 -6.6742 -1.0192 12 6 -1.6254 -5.9988 -0.9467 13 6 -1.9362 -5.1912 0.1312 14 6 -3.1683 -4.5679 0.1954 15 6 -4.0934 -4.7600 -0.8137 16 6 -3.7848 -5.5721 -1.8889 17 6 -2.5507 -6.1913 -1.9555 18 6 0.4612 -6.7166 0.3275 19 6 0.8988 -8.1423 -0.0478 20 1 1.8339 -8.1792 -0.6066 21 9 0.8726 -9.0376 1.0269 22 6 -0.3536 -8.2081 -0.9376 23 6 2.8656 -2.0018 -3.5026 24 9 3.3201 -2.6294 -4.6092 25 6 3.1925 -0.6777 -3.2721 26 6 2.7225 -0.0337 -2.1432 27 1 -0.3933 0.4417 -0.7650 28 1 1.7923 -0.5138 0.8901 29 1 1.5878 2.4586 -1.2243 30 1 1.5614 2.4679 1.2085 31 1 0.9765 -2.5545 -0.7345 32 1 0.6079 -4.3058 -1.1472 33 1 0.0209 -6.2446 -3.1087 34 1 1.4896 -6.7593 -2.2446 35 1 -1.2150 -5.0446 0.9218 36 1 -3.4096 -3.9337 1.0355 37 1 -5.0575 -4.2760 -0.7618 38 1 -4.5077 -5.7226 -2.6771 39 1 -2.3097 -6.8262 -2.7955 40 1 1.2878 -6.0092 0.3932 41 1 -0.2013 -6.6751 1.1920 42 1 -1.2390 -8.5759 -0.4188 43 1 -0.1849 -8.7048 -1.8930 44 1 3.8126 -0.1448 -3.9779 45 1 2.9770 1.0015 -1.9701 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_12335834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:26:21 Heat of formation + Delta-G solvation = -71.581107 kcal Electronic energy + Delta-G solvation = -32446.948459 eV Core-core repulsion = 27839.839526 eV Total energy + Delta-G solvation = -4607.108933 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.132 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.02148 -48.59484 -41.81887 -40.96356 -39.85599 -38.77728 -37.58294 -35.54645 -32.87827 -32.31282 -31.99880 -31.87190 -28.68427 -27.14329 -26.63862 -25.56393 -24.77028 -23.28660 -22.94359 -22.51508 -21.61204 -20.14832 -19.14379 -18.44166 -18.35842 -18.30533 -17.57036 -17.30012 -16.98637 -16.80838 -16.58152 -16.23712 -16.15874 -16.04042 -15.93836 -15.69219 -15.53781 -15.45217 -14.91972 -14.71891 -14.49860 -14.41643 -14.37166 -14.29221 -13.69144 -13.57639 -13.54691 -13.41602 -13.17978 -12.85443 -12.53893 -12.45780 -12.29937 -12.22037 -11.81499 -11.74296 -11.37082 -11.30785 -11.24238 -10.64820 -10.46514 -10.17129 -9.84983 -9.83358 -9.67141 -4.88347 -0.51094 -0.04125 0.38416 0.47129 1.30977 1.58896 1.63304 1.86021 2.01840 2.46170 2.79660 3.03563 3.10839 3.19208 3.32467 3.39998 3.43164 3.51355 3.56190 3.57139 3.64641 3.84617 3.99666 4.08799 4.09081 4.10841 4.17769 4.27024 4.44035 4.46822 4.55617 4.61887 4.62201 4.64248 4.66311 4.69897 4.77701 4.81938 4.84541 4.92409 4.94390 5.07251 5.12218 5.12681 5.19689 5.25172 5.55816 5.58746 5.61365 5.62405 6.07273 6.28373 6.48938 6.98270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.075 4.075 3 Si 0.760 3.240 4 C -0.130 4.130 5 C -0.025 4.025 6 C -0.188 4.188 7 C 0.555 3.445 8 O -0.569 6.569 9 N -0.704 5.704 10 C 0.147 3.853 11 C -0.042 4.042 12 C -0.072 4.072 13 C -0.121 4.121 14 C -0.123 4.123 15 C -0.132 4.132 16 C -0.130 4.130 17 C -0.123 4.123 18 C -0.147 4.147 19 C 0.056 3.944 20 H 0.123 0.877 21 F -0.223 7.223 22 C -0.137 4.137 23 C 0.134 3.866 24 F -0.136 7.136 25 C -0.152 4.152 26 C -0.051 4.051 27 H 0.387 0.613 28 H 0.138 0.862 29 H -0.279 1.279 30 H -0.305 1.305 31 H 0.154 0.846 32 H 0.412 0.588 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.167 0.833 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 4.795 3.756 6.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.184 4.184 3 Si 0.665 3.335 4 C -0.131 4.131 5 C -0.044 4.044 6 C -0.192 4.192 7 C 0.343 3.657 8 O -0.449 6.449 9 N -0.357 5.357 10 C 0.024 3.976 11 C -0.043 4.043 12 C -0.072 4.072 13 C -0.139 4.139 14 C -0.141 4.141 15 C -0.150 4.150 16 C -0.147 4.147 17 C -0.141 4.141 18 C -0.185 4.185 19 C 0.021 3.979 20 H 0.141 0.859 21 F -0.203 7.203 22 C -0.176 4.176 23 C 0.114 3.886 24 F -0.114 7.114 25 C -0.170 4.170 26 C -0.069 4.069 27 H 0.236 0.764 28 H 0.156 0.844 29 H -0.205 1.205 30 H -0.233 1.233 31 H 0.171 0.829 32 H 0.250 0.750 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.185 0.815 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.389 4.815 3.584 6.015 hybrid contribution -1.389 -0.371 -0.644 1.576 sum -1.000 4.444 2.939 5.421 Atomic orbital electron populations 1.86595 1.18036 1.80216 1.50269 1.25173 0.83684 1.11390 0.98161 0.94182 0.90313 0.72214 0.76772 1.20396 1.00067 0.94420 0.98207 1.21148 0.95343 0.94099 0.93815 1.20036 1.05604 0.94571 0.99022 1.18266 0.78408 0.86324 0.82673 1.90847 1.55100 1.69529 1.29432 1.45635 1.51306 1.12989 1.25748 1.21164 0.98491 0.81106 0.96886 1.20565 0.92398 0.95836 0.95475 1.19462 0.94348 0.98108 0.95263 1.21293 0.97537 0.96975 0.98114 1.21416 0.93865 0.99667 0.99153 1.21446 1.00294 0.98746 0.94503 1.21376 0.97121 0.97409 0.98841 1.21139 0.93874 1.00167 0.98884 1.23775 1.01158 0.96351 0.97186 1.23335 1.00735 0.88069 0.85799 0.85927 1.92789 1.97911 1.70822 1.58821 1.23625 0.98491 0.93774 1.01663 1.18195 0.95196 0.91876 0.83332 1.91560 1.86609 1.82777 1.50489 1.21392 1.03200 0.91746 1.00669 1.21389 0.93440 1.00757 0.91281 0.76357 0.84425 1.20510 1.23324 0.82862 0.75022 0.91346 0.90213 0.84143 0.84624 0.85124 0.85291 0.85740 0.88469 0.87483 0.88382 0.88574 0.81505 0.81555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.39 12.76 -148.98 -1.90 0.48 16 2 C -0.07 0.58 2.82 71.23 0.20 0.78 16 3 Si 0.76 -5.75 29.78 68.60 2.04 -3.71 16 4 C -0.13 0.81 5.38 -19.91 -0.11 0.70 16 5 C -0.03 0.10 9.09 22.52 0.20 0.30 16 6 C -0.19 -0.51 5.88 -20.05 -0.12 -0.62 16 7 C 0.56 3.57 7.77 86.74 0.67 4.25 16 8 O -0.57 -8.82 15.34 -3.92 -0.06 -8.88 16 9 N -0.70 0.46 5.11 -466.12 -2.38 -1.92 16 10 C 0.15 -0.17 4.85 86.38 0.42 0.25 16 11 C -0.04 0.18 0.63 -52.40 -0.03 0.14 16 12 C -0.07 0.15 4.61 -19.87 -0.09 0.05 16 13 C -0.12 0.35 9.05 22.27 0.20 0.55 16 14 C -0.12 0.20 10.05 22.27 0.22 0.43 16 15 C -0.13 0.04 10.05 22.27 0.22 0.27 16 16 C -0.13 -0.05 10.05 22.27 0.22 0.18 16 17 C -0.12 0.00 9.33 22.27 0.21 0.21 16 18 C -0.15 0.79 6.03 31.12 0.19 0.97 16 19 C 0.06 -0.14 5.31 31.12 0.17 0.03 16 20 H 0.12 -0.60 7.61 -2.39 -0.02 -0.62 16 21 F -0.22 -0.98 17.41 44.97 0.78 -0.19 16 22 C -0.14 0.48 7.00 31.12 0.22 0.70 16 23 C 0.13 0.60 7.29 22.67 0.17 0.76 16 24 F -0.14 -1.55 15.55 44.97 0.70 -0.85 16 25 C -0.15 0.44 10.01 22.28 0.22 0.66 16 26 C -0.05 0.35 8.66 22.32 0.19 0.55 16 27 H 0.39 -3.48 8.70 -74.06 -0.64 -4.12 16 28 H 0.14 -1.41 7.96 -2.38 -0.02 -1.43 16 29 H -0.28 1.07 7.10 99.48 0.71 1.78 16 30 H -0.30 -0.41 7.11 99.48 0.71 0.29 16 31 H 0.15 -1.18 6.41 -2.91 -0.02 -1.19 16 32 H 0.41 -2.17 6.24 -92.71 -0.58 -2.75 16 33 H 0.07 0.11 7.95 -2.38 -0.02 0.09 16 34 H 0.08 -0.07 7.31 -2.39 -0.02 -0.09 16 35 H 0.14 -0.96 6.41 -2.91 -0.02 -0.98 16 36 H 0.14 -0.64 8.06 -2.92 -0.02 -0.66 16 37 H 0.13 -0.39 8.06 -2.91 -0.02 -0.41 16 38 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 39 H 0.12 -0.18 8.06 -2.91 -0.02 -0.20 16 40 H 0.10 -0.73 7.89 -2.39 -0.02 -0.75 16 41 H 0.11 -0.57 6.79 -2.39 -0.02 -0.59 16 42 H 0.10 -0.19 8.10 -2.38 -0.02 -0.21 16 43 H 0.10 -0.48 8.10 -2.39 -0.02 -0.50 16 44 H 0.17 -1.16 8.06 -2.91 -0.02 -1.18 16 45 H 0.17 -2.03 4.86 -2.91 -0.01 -2.04 16 Total: 0.00 -22.20 378.62 2.44 -19.76 By element: Atomic # 1 Polarization: -15.70 SS G_CDS: -0.13 Total: -15.83 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 3.38 Total: 11.15 kcal Atomic # 7 Polarization: 0.46 SS G_CDS: -2.38 Total: -1.92 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -1.96 Total: -8.39 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 1.48 Total: -1.05 kcal Atomic # 14 Polarization: -5.75 SS G_CDS: 2.04 Total: -3.71 kcal Total: -22.20 2.44 -19.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_12335834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.825 kcal (2) G-P(sol) polarization free energy of solvation -22.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds