Wall clock time and date at job start Sat Mar 6 2021 21:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86302 * 109.47089 * 2 1 4 4 C 1.50700 * 109.47387 * 119.99769 * 2 1 3 5 5 C 1.38239 * 119.99789 * 65.00069 * 4 2 1 6 6 C 1.38229 * 120.00195 * 180.02562 * 5 4 2 7 7 C 1.38239 * 119.99871 * 359.96158 * 6 5 4 8 8 C 1.50701 * 119.99727 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47205 * 89.99724 * 8 7 6 10 10 O 1.21287 * 120.00019 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00067 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99932 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46965 * 184.65244 * 12 11 9 14 14 C 1.50709 * 112.84713 * 63.60648 * 13 12 11 15 15 C 1.38236 * 120.00117 * 66.07419 * 14 13 12 16 16 C 1.38226 * 119.99977 * 179.97438 * 15 14 13 17 17 C 1.38243 * 120.00098 * 359.97438 * 16 15 14 18 18 C 1.38235 * 119.99931 * 0.27902 * 17 16 15 19 19 C 1.38232 * 119.99557 * 246.05226 * 14 13 12 20 20 C 1.53778 * 113.61585 * 292.41133 * 13 12 11 21 21 C 1.53785 * 87.07939 * 270.79617 * 20 13 12 22 22 H 1.09000 * 113.61052 * 89.11634 * 21 20 13 23 23 F 1.39893 * 113.61882 * 219.93320 * 21 20 13 24 24 C 1.53775 * 113.61501 * 194.79906 * 13 12 11 25 25 C 1.38229 * 119.99802 * 0.27210 * 7 6 5 26 26 C 1.38233 * 120.00410 * 359.53639 * 25 7 6 27 27 H 0.96698 * 114.00034 * 300.00295 * 1 2 3 28 28 H 1.09005 * 109.47304 * 239.99897 * 2 1 3 29 29 H 1.48498 * 109.99948 * 178.68270 * 3 2 1 30 30 H 1.48501 * 109.99874 * 299.99995 * 3 2 1 31 31 H 1.08008 * 119.99722 * 0.02562 * 5 4 2 32 32 H 1.08002 * 120.00119 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.47168 * 329.99490 * 8 7 6 34 34 H 1.09004 * 109.46772 * 209.99854 * 8 7 6 35 35 H 0.96997 * 119.99755 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.47302 * 64.65783 * 12 11 9 37 37 H 1.09000 * 109.47392 * 304.64806 * 12 11 9 38 38 H 1.07997 * 119.99740 * 359.97438 * 15 14 13 39 39 H 1.07999 * 120.00085 * 179.97438 * 16 15 14 40 40 H 1.07997 * 119.99999 * 179.97438 * 17 16 15 41 41 H 1.07996 * 119.99907 * 179.71912 * 18 17 16 42 42 H 1.08000 * 120.00601 * 359.97438 * 19 14 13 43 43 H 1.08992 * 113.61760 * 25.34555 * 20 13 12 44 44 H 1.09000 * 113.61647 * 156.25307 * 20 13 12 45 45 H 1.08998 * 113.61856 * 203.75189 * 24 13 12 46 46 H 1.09006 * 113.61482 * 334.65306 * 24 13 12 47 47 H 1.08003 * 120.00036 * 179.73192 * 25 7 6 48 48 H 1.07994 * 120.00528 * 180.21239 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.6848 -2.0602 1.3984 6 6 2.1452 -2.7117 2.5272 7 6 2.8528 -2.0136 3.4879 8 6 3.3552 -2.7241 4.7183 9 6 4.7365 -3.2666 4.4564 10 8 5.2616 -3.0930 3.3770 11 7 5.3888 -3.9438 5.4219 12 6 6.7318 -4.4708 5.1674 13 6 7.1953 -5.2900 6.3737 14 6 6.3414 -6.5078 6.6170 15 6 6.3282 -7.5380 5.6953 16 6 5.5454 -8.6551 5.9187 17 6 4.7762 -8.7424 7.0641 18 6 4.7854 -7.7099 7.9832 19 6 5.5718 -6.5947 7.7620 20 6 7.4373 -4.4453 7.6357 21 6 8.8817 -4.2621 7.1406 22 1 9.0140 -3.3972 6.4905 23 9 9.8364 -4.3255 8.1612 24 6 8.7043 -5.5856 6.3745 25 6 3.0952 -0.6628 3.3223 26 6 2.6383 -0.0121 2.1915 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5139 -0.8900 29 1 3.5346 1.7703 0.0321 30 1 1.5615 2.4679 -1.2085 31 1 1.1325 -2.6057 0.6475 32 1 1.9521 -3.7662 2.6586 33 1 2.6824 -3.5459 4.9635 34 1 3.3921 -2.0236 5.5527 35 1 4.9690 -4.0823 6.2853 36 1 7.4219 -3.6431 5.0037 37 1 6.7109 -5.1070 4.2826 38 1 6.9294 -7.4699 4.8008 39 1 5.5347 -9.4598 5.1985 40 1 4.1643 -9.6151 7.2384 41 1 4.1810 -7.7761 8.8757 42 1 5.5827 -5.7902 8.4824 43 1 6.8628 -3.5194 7.6583 44 1 7.3624 -5.0138 8.5627 45 1 8.9765 -6.4665 6.9559 46 1 9.1511 -5.5790 5.3802 47 1 3.6443 -0.1165 4.0749 48 1 2.8306 1.0425 2.0605 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_12335836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:26:24 Heat of formation + Delta-G solvation = -37.355251 kcal Electronic energy + Delta-G solvation = -30804.331472 eV Core-core repulsion = 26512.623039 eV Total energy + Delta-G solvation = -4291.708432 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.58389 -41.68149 -40.90242 -39.95542 -38.75513 -37.63293 -35.29030 -34.02647 -32.04297 -31.93305 -31.85164 -30.21404 -28.18900 -27.09724 -25.72490 -24.79478 -23.80935 -23.23367 -22.53115 -22.19192 -21.29744 -19.91287 -18.52135 -18.39695 -17.97034 -17.54147 -17.21507 -16.95509 -16.56002 -16.47333 -16.30626 -16.10552 -15.92599 -15.62071 -15.55644 -15.48273 -15.03212 -14.75233 -14.56729 -14.46510 -14.41810 -14.28023 -14.09190 -13.67771 -13.56713 -13.39602 -13.25337 -13.01702 -12.80457 -12.48354 -12.41656 -12.26068 -12.19173 -12.00628 -11.78209 -11.71507 -11.34064 -11.25778 -11.01416 -10.44448 -10.12363 -9.87298 -9.82803 -9.65937 -9.60649 -5.04041 0.24202 0.40695 0.45628 0.48864 1.29272 1.62143 1.64451 1.93608 2.10812 2.77282 2.82644 3.13823 3.26313 3.43800 3.50669 3.55804 3.62889 3.64154 3.79783 3.86702 3.91068 4.04872 4.06094 4.11725 4.12766 4.21397 4.29524 4.34904 4.46479 4.48509 4.49917 4.61412 4.62506 4.64278 4.66471 4.70960 4.71839 4.72560 4.86899 4.95611 5.02494 5.09117 5.09799 5.14273 5.27255 5.37850 5.38720 5.53886 5.57854 5.59594 5.64018 5.64267 6.02050 6.09419 6.52353 6.76050 7.24818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.076 4.076 3 Si 0.782 3.218 4 C -0.129 4.129 5 C -0.109 4.109 6 C -0.117 4.117 7 C -0.070 4.070 8 C -0.098 4.098 9 C 0.514 3.486 10 O -0.580 6.580 11 N -0.714 5.714 12 C 0.149 3.851 13 C -0.040 4.040 14 C -0.070 4.070 15 C -0.124 4.124 16 C -0.131 4.131 17 C -0.133 4.133 18 C -0.124 4.124 19 C -0.120 4.120 20 C -0.144 4.144 21 C 0.055 3.945 22 H 0.123 0.877 23 F -0.224 7.224 24 C -0.142 4.142 25 C -0.109 4.109 26 C -0.121 4.121 27 H 0.395 0.605 28 H 0.099 0.901 29 H -0.292 1.292 30 H -0.298 1.298 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.415 0.585 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.145 0.855 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 0.407 7.426 7.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.186 4.186 3 Si 0.689 3.311 4 C -0.129 4.129 5 C -0.127 4.127 6 C -0.135 4.135 7 C -0.070 4.070 8 C -0.137 4.137 9 C 0.302 3.698 10 O -0.459 6.459 11 N -0.366 5.366 12 C 0.025 3.975 13 C -0.041 4.041 14 C -0.070 4.070 15 C -0.142 4.142 16 C -0.149 4.149 17 C -0.151 4.151 18 C -0.141 4.141 19 C -0.137 4.137 20 C -0.181 4.181 21 C 0.019 3.981 22 H 0.141 0.859 23 F -0.205 7.205 24 C -0.180 4.180 25 C -0.127 4.127 26 C -0.139 4.139 27 H 0.245 0.755 28 H 0.117 0.883 29 H -0.219 1.219 30 H -0.226 1.226 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.154 0.846 35 H 0.252 0.748 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.162 0.838 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.163 0.837 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.895 0.794 5.730 6.088 hybrid contribution 0.202 -1.202 -0.280 1.250 sum -1.693 -0.408 5.450 5.722 Atomic orbital electron populations 1.86461 1.17156 1.82236 1.50482 1.25196 0.85343 1.10999 0.97059 0.93757 0.77530 0.75208 0.84608 1.20400 1.00321 0.95085 0.97105 1.21080 0.99470 0.94289 0.97900 1.21218 0.98195 1.00136 0.93957 1.19564 0.97383 0.94051 0.96038 1.20754 0.92602 1.02759 0.97621 1.20980 0.88046 0.77367 0.83418 1.90755 1.69702 1.59278 1.26208 1.45772 1.17590 1.56125 1.17137 1.21032 0.83941 0.96777 0.95779 1.20567 0.94358 0.93454 0.95688 1.19471 0.97688 0.94675 0.95171 1.21106 0.99577 0.94039 0.99455 1.21362 0.97032 0.98374 0.98122 1.21450 0.99427 0.99646 0.94567 1.21445 0.99168 0.93759 0.99775 1.21309 0.96307 0.99002 0.97112 1.23753 0.94935 1.01555 0.97898 1.23391 0.86572 1.00323 0.87774 0.85896 1.92786 1.67386 1.97658 1.62641 1.23673 0.93831 0.98011 1.02499 1.21251 0.99010 0.94234 0.98157 1.21163 0.98486 1.00041 0.94169 0.75467 0.88334 1.21943 1.22627 0.86172 0.85360 0.85706 0.84575 0.74838 0.90815 0.92082 0.86177 0.85530 0.85145 0.84377 0.83842 0.87958 0.87672 0.88685 0.88970 0.83727 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.37 12.83 -148.98 -1.91 -3.28 16 2 C -0.08 -0.20 2.80 71.24 0.20 0.00 16 3 Si 0.78 0.08 29.80 68.60 2.04 2.13 16 4 C -0.13 -0.44 5.35 -19.87 -0.11 -0.55 16 5 C -0.11 -0.53 9.69 22.27 0.22 -0.32 16 6 C -0.12 -0.37 9.70 22.27 0.22 -0.16 16 7 C -0.07 -0.06 4.37 -19.87 -0.09 -0.14 16 8 C -0.10 0.54 5.83 29.10 0.17 0.71 16 9 C 0.51 0.19 7.82 87.66 0.69 0.88 16 10 O -0.58 -6.32 16.03 -3.05 -0.05 -6.37 16 11 N -0.71 3.54 5.22 -463.05 -2.42 1.12 16 12 C 0.15 -0.49 4.83 86.38 0.42 -0.07 16 13 C -0.04 0.23 0.62 -52.40 -0.03 0.20 16 14 C -0.07 0.24 4.56 -19.86 -0.09 0.15 16 15 C -0.12 0.09 9.37 22.27 0.21 0.30 16 16 C -0.13 0.04 10.05 22.27 0.22 0.27 16 17 C -0.13 0.20 10.05 22.27 0.22 0.42 16 18 C -0.12 0.42 10.05 22.27 0.22 0.64 16 19 C -0.12 0.57 9.05 22.27 0.20 0.77 16 20 C -0.14 1.03 6.04 31.12 0.19 1.22 16 21 C 0.06 -0.20 5.32 31.18 0.17 -0.03 16 22 H 0.12 -0.76 7.60 -2.39 -0.02 -0.78 16 23 F -0.22 -0.82 17.41 44.97 0.78 -0.03 16 24 C -0.14 0.57 7.02 31.18 0.22 0.79 16 25 C -0.11 -0.04 9.70 22.27 0.22 0.18 16 26 C -0.12 -0.13 8.67 22.27 0.19 0.06 16 27 H 0.40 -2.42 8.70 -74.06 -0.64 -3.07 16 28 H 0.10 0.47 7.96 -2.38 -0.02 0.45 16 29 H -0.29 -1.68 7.11 99.48 0.71 -0.97 16 30 H -0.30 -2.13 7.11 99.48 0.71 -1.43 16 31 H 0.12 0.55 8.06 -2.91 -0.02 0.53 16 32 H 0.13 0.08 8.06 -2.91 -0.02 0.06 16 33 H 0.12 -1.18 8.09 -2.39 -0.02 -1.19 16 34 H 0.14 -1.58 8.08 -2.38 -0.02 -1.60 16 35 H 0.41 -4.20 8.24 -92.71 -0.76 -4.96 16 36 H 0.07 -0.21 7.31 -2.39 -0.02 -0.23 16 37 H 0.06 0.04 8.00 -2.39 -0.02 0.03 16 38 H 0.12 -0.17 8.06 -2.91 -0.02 -0.20 16 39 H 0.13 -0.28 8.06 -2.91 -0.02 -0.31 16 40 H 0.13 -0.53 8.06 -2.91 -0.02 -0.55 16 41 H 0.14 -0.95 8.06 -2.91 -0.02 -0.97 16 42 H 0.14 -1.31 6.42 -2.91 -0.02 -1.33 16 43 H 0.10 -1.05 8.00 -2.39 -0.02 -1.07 16 44 H 0.10 -0.72 6.80 -2.39 -0.02 -0.74 16 45 H 0.09 -0.20 8.09 -2.39 -0.02 -0.22 16 46 H 0.09 -0.46 8.10 -2.38 -0.02 -0.48 16 47 H 0.14 -0.64 8.06 -2.91 -0.02 -0.67 16 48 H 0.14 -0.49 4.91 -2.91 -0.01 -0.50 16 Total: 0.00 -23.04 399.13 1.72 -21.32 By element: Atomic # 1 Polarization: -19.81 SS G_CDS: -0.38 Total: -20.19 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 3.65 Total: 5.30 kcal Atomic # 7 Polarization: 3.54 SS G_CDS: -2.42 Total: 1.12 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -1.96 Total: -9.65 kcal Atomic # 9 Polarization: -0.82 SS G_CDS: 0.78 Total: -0.03 kcal Atomic # 14 Polarization: 0.08 SS G_CDS: 2.04 Total: 2.13 kcal Total: -23.04 1.72 -21.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_12335836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.036 kcal (2) G-P(sol) polarization free energy of solvation -23.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds