Wall clock time and date at job start Sat Mar 6 2021 21:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.47180 * 2 1 4 4 C 1.50700 * 109.46924 * 240.00481 * 2 1 3 5 5 C 1.37945 * 119.92026 * 299.72195 * 4 2 1 6 6 C 1.39594 * 119.87240 * 179.71006 * 5 4 2 7 7 C 1.47852 * 120.14050 * 180.27017 * 6 5 4 8 8 O 1.21552 * 119.99931 * 0.29702 * 7 6 5 9 9 N 1.34781 * 120.00274 * 180.29140 * 7 6 5 10 10 C 1.46496 * 119.99965 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46923 * 179.03872 * 10 9 7 12 12 C 1.50700 * 112.85104 * 66.14762 * 11 10 9 13 13 C 1.38238 * 120.00113 * 245.83104 * 12 11 10 14 14 C 1.38231 * 119.99911 * 179.76371 * 13 12 11 15 15 C 1.38236 * 119.99838 * 0.50751 * 14 13 12 16 16 C 1.38237 * 120.00278 * 359.73917 * 15 14 13 17 17 C 1.38228 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.53785 * 113.61700 * 294.95089 * 11 10 9 19 19 C 1.53786 * 87.08123 * 270.88545 * 18 11 10 20 20 H 1.08998 * 113.61447 * 89.11316 * 19 18 11 21 21 F 1.39895 * 113.61161 * 220.01989 * 19 18 11 22 22 C 1.53780 * 113.61313 * 197.45469 * 11 10 9 23 23 C 1.39542 * 119.72055 * 0.56411 * 6 5 4 24 24 C 1.38066 * 119.84378 * 359.73209 * 23 6 5 25 25 Br 1.89105 * 119.93952 * 180.02562 * 24 23 6 26 26 C 1.38362 * 119.92630 * 119.99896 * 4 2 1 27 27 H 0.96696 * 114.00080 * 59.99767 * 1 2 3 28 28 H 1.08996 * 109.47742 * 120.00469 * 2 1 3 29 29 H 1.48499 * 109.99979 * 298.68344 * 3 2 1 30 30 H 1.48500 * 110.00063 * 59.99992 * 3 2 1 31 31 H 1.07998 * 120.06181 * 359.97438 * 5 4 2 32 32 H 0.97003 * 119.99850 * 0.02562 * 9 7 6 33 33 H 1.08996 * 109.47400 * 299.04284 * 10 9 7 34 34 H 1.09008 * 109.46636 * 59.04320 * 10 9 7 35 35 H 1.07997 * 119.99767 * 359.97438 * 13 12 11 36 36 H 1.07998 * 120.00131 * 180.22980 * 14 13 12 37 37 H 1.08001 * 119.99855 * 179.72951 * 15 14 13 38 38 H 1.07998 * 119.99934 * 179.97438 * 16 15 14 39 39 H 1.08002 * 120.00519 * 179.97438 * 17 16 15 40 40 H 1.08998 * 113.61175 * 25.43293 * 18 11 10 41 41 H 1.09000 * 113.61400 * 156.33548 * 18 11 10 42 42 H 1.09002 * 113.61201 * 203.66713 * 22 11 10 43 43 H 1.08992 * 113.61697 * 334.56534 * 22 11 10 44 44 H 1.08005 * 120.08012 * 179.70980 * 23 6 5 45 45 H 1.07999 * 119.85524 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7103 -1.2305 5 6 1.6017 -2.0326 -1.4444 6 6 2.0625 -2.6879 -2.5876 7 6 1.7079 -4.1034 -2.8257 8 8 1.0093 -4.6974 -2.0279 9 7 2.1592 -4.7350 -3.9275 10 6 1.8083 -6.1377 -4.1631 11 6 2.4235 -6.6022 -5.4848 12 6 3.9297 -6.6357 -5.4494 13 6 4.6591 -5.7735 -6.2466 14 6 6.0407 -5.8008 -6.2105 15 6 6.6929 -6.6976 -5.3850 16 6 5.9635 -7.5633 -4.5917 17 6 4.5819 -7.5326 -4.6241 18 6 1.8521 -5.8814 -6.7173 19 6 0.7806 -6.9834 -6.7672 20 1 -0.1068 -6.7566 -6.1763 21 9 0.4766 -7.4110 -8.0641 22 6 1.7897 -7.8883 -6.0408 23 6 2.8643 -2.0031 -3.5017 24 6 3.1921 -0.6816 -3.2730 25 35 4.2778 0.2492 -4.5103 26 6 2.7266 -0.0364 -2.1403 27 1 -0.3933 0.4417 -0.7650 28 1 1.7924 -0.5139 0.8899 29 1 1.5878 2.4586 -1.2242 30 1 1.5615 2.4679 1.2085 31 1 0.9849 -2.5587 -0.7309 32 1 2.7169 -4.2611 -4.5641 33 1 2.1932 -6.7504 -3.3480 34 1 0.7239 -6.2376 -4.2121 35 1 4.1496 -5.0762 -6.8950 36 1 6.6106 -5.1247 -6.8305 37 1 7.7723 -6.7220 -5.3601 38 1 6.4731 -8.2642 -3.9471 39 1 4.0120 -8.2092 -4.0046 40 1 1.4510 -4.8920 -6.4975 41 1 2.5235 -5.8860 -7.5759 42 1 2.4441 -8.4415 -6.7146 43 1 1.3383 -8.5190 -5.2751 44 1 3.2278 -2.5058 -4.3858 45 1 2.9850 0.9977 -1.9660 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13458982_12335870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:26:54 Heat of formation + Delta-G solvation = -29.887919 kcal Electronic energy + Delta-G solvation = -31528.670991 eV Core-core repulsion = 27053.005983 eV Total energy + Delta-G solvation = -4475.665008 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 420.052 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.57682 -41.94034 -41.22173 -39.87687 -38.87114 -37.84847 -35.53390 -33.67970 -33.22247 -32.13872 -31.98269 -30.53317 -28.87715 -27.31415 -27.08711 -25.60912 -24.49488 -23.34486 -22.88357 -22.63826 -21.48785 -20.20341 -19.15235 -18.54591 -18.01965 -17.70226 -17.57540 -17.27647 -16.71229 -16.58346 -16.48132 -16.19783 -16.05861 -15.86469 -15.60937 -15.57072 -15.09683 -15.01767 -14.68410 -14.65688 -14.42366 -14.27932 -14.12634 -13.73473 -13.65162 -13.49139 -13.33457 -13.05797 -12.64085 -12.58004 -12.34301 -12.31577 -12.02584 -11.92499 -11.86605 -11.52912 -11.47472 -11.42564 -11.16785 -10.77553 -10.42280 -10.20309 -9.97309 -9.93873 -9.76475 -5.09089 -0.56077 -0.23287 0.29115 0.35107 0.37894 1.10450 1.46691 1.53580 1.81443 1.88708 2.44784 2.70372 2.96697 3.06253 3.14044 3.22688 3.26731 3.31475 3.41781 3.48584 3.70669 3.72943 3.78912 3.90660 3.94791 3.97821 4.04024 4.13850 4.15606 4.20634 4.35804 4.43798 4.45406 4.47841 4.49673 4.53989 4.57056 4.65705 4.68116 4.79838 4.87356 4.95528 5.00479 5.01364 5.11482 5.16109 5.33751 5.45701 5.51061 5.53377 5.96084 6.25757 6.25965 7.00643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.524 6.524 2 C -0.073 4.073 3 Si 0.679 3.321 4 C -0.117 4.117 5 C -0.017 4.017 6 C -0.127 4.127 7 C 0.562 3.438 8 O -0.526 6.526 9 N -0.721 5.721 10 C 0.146 3.854 11 C -0.056 4.056 12 C -0.070 4.070 13 C -0.120 4.120 14 C -0.115 4.115 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.109 4.109 18 C -0.155 4.155 19 C 0.066 3.934 20 H 0.112 0.888 21 F -0.203 7.203 22 C -0.139 4.139 23 C -0.053 4.053 24 C -0.094 4.094 25 Br -0.032 7.032 26 C -0.063 4.063 27 H 0.378 0.622 28 H 0.126 0.874 29 H -0.255 1.255 30 H -0.250 1.250 31 H 0.149 0.851 32 H 0.401 0.599 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.137 0.863 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.125 1.153 -1.186 4.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.330 6.330 2 C -0.183 4.183 3 Si 0.579 3.421 4 C -0.119 4.119 5 C -0.036 4.036 6 C -0.131 4.131 7 C 0.349 3.651 8 O -0.402 6.402 9 N -0.373 5.373 10 C 0.023 3.977 11 C -0.056 4.056 12 C -0.070 4.070 13 C -0.138 4.138 14 C -0.133 4.133 15 C -0.137 4.137 16 C -0.133 4.133 17 C -0.127 4.127 18 C -0.192 4.192 19 C 0.030 3.970 20 H 0.130 0.870 21 F -0.184 7.184 22 C -0.177 4.177 23 C -0.074 4.074 24 C -0.173 4.173 25 Br 0.054 6.946 26 C -0.083 4.083 27 H 0.225 0.775 28 H 0.144 0.856 29 H -0.180 1.180 30 H -0.175 1.175 31 H 0.167 0.833 32 H 0.237 0.763 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.107 0.893 44 H 0.155 0.845 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.886 1.566 -0.567 4.227 hybrid contribution -0.845 -0.230 -0.761 1.160 sum 3.041 1.336 -1.327 3.577 Atomic orbital electron populations 1.86644 1.17157 1.79882 1.49357 1.25052 0.84356 1.11058 0.97866 0.95088 0.91634 0.74284 0.81064 1.20323 0.99289 0.94784 0.97485 1.21296 0.94382 0.92901 0.95040 1.19934 1.01887 0.94215 0.97102 1.18070 0.79891 0.85942 0.81211 1.90834 1.37235 1.67107 1.45062 1.45778 1.53824 1.13040 1.24681 1.21180 0.99941 0.81534 0.95086 1.20762 0.92021 0.98434 0.94412 1.19380 0.93032 0.97020 0.97584 1.21073 0.94111 0.99241 0.99330 1.21181 0.94395 0.98830 0.98891 1.21240 1.00196 0.95817 0.96438 1.21194 0.94014 0.99010 0.99075 1.20969 0.94534 0.98533 0.98634 1.23801 0.98043 0.99004 0.98388 1.23083 0.97681 0.96138 0.80146 0.87042 1.92831 1.94884 1.90842 1.39835 1.23643 0.97639 0.95949 1.00467 1.21275 0.95097 0.92554 0.98450 1.21636 1.02949 0.95590 0.97159 1.96848 1.65775 1.75356 1.56658 1.21220 0.95139 0.99986 0.91935 0.77467 0.85637 1.17954 1.17470 0.83345 0.76285 0.90139 0.90249 0.85849 0.85832 0.85946 0.85868 0.86023 0.89691 0.87697 0.87799 0.89298 0.84529 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.20 12.77 -35.23 -0.45 -0.65 16 2 C -0.07 0.09 2.82 36.01 0.10 0.19 16 3 Si 0.68 -1.25 29.78 -169.99 -5.06 -6.32 16 4 C -0.12 0.10 5.38 -104.68 -0.56 -0.46 16 5 C -0.02 -0.01 9.16 -39.18 -0.36 -0.37 16 6 C -0.13 -0.03 5.87 -104.97 -0.62 -0.64 16 7 C 0.56 0.79 7.77 -12.32 -0.10 0.70 16 8 O -0.53 -2.64 16.35 5.32 0.09 -2.55 16 9 N -0.72 0.90 5.11 -61.25 -0.31 0.59 16 10 C 0.15 -0.23 4.85 -4.04 -0.02 -0.25 16 11 C -0.06 0.14 0.63 -154.85 -0.10 0.05 16 12 C -0.07 0.11 4.61 -104.62 -0.48 -0.37 16 13 C -0.12 0.20 9.05 -39.58 -0.36 -0.16 16 14 C -0.11 0.13 10.05 -39.58 -0.40 -0.26 16 15 C -0.12 0.09 10.05 -39.58 -0.40 -0.31 16 16 C -0.11 0.07 10.05 -39.59 -0.40 -0.32 16 17 C -0.11 0.09 9.33 -39.58 -0.37 -0.28 16 18 C -0.15 0.41 6.03 -25.91 -0.16 0.26 16 19 C 0.07 -0.10 5.32 -25.92 -0.14 -0.24 16 20 H 0.11 -0.30 7.61 -51.93 -0.40 -0.70 16 21 F -0.20 -0.38 17.41 2.25 0.04 -0.34 16 22 C -0.14 0.31 7.00 -25.92 -0.18 0.13 16 23 C -0.05 0.07 9.28 -39.16 -0.36 -0.29 16 24 C -0.09 0.09 6.22 -39.58 -0.25 -0.15 16 25 Br -0.03 0.03 33.69 -68.01 -2.29 -2.26 16 26 C -0.06 0.08 8.41 -39.47 -0.33 -0.25 16 27 H 0.38 -0.94 8.70 45.56 0.40 -0.54 16 28 H 0.13 -0.25 7.96 -51.93 -0.41 -0.66 16 29 H -0.25 0.02 7.11 56.52 0.40 0.42 16 30 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 31 H 0.15 0.21 7.65 -52.49 -0.40 -0.19 16 32 H 0.40 -1.19 6.25 -40.82 -0.25 -1.44 16 33 H 0.08 -0.06 7.95 -51.93 -0.41 -0.47 16 34 H 0.08 -0.12 7.31 -51.92 -0.38 -0.50 16 35 H 0.12 -0.40 6.41 -52.49 -0.34 -0.73 16 36 H 0.12 -0.32 8.06 -52.49 -0.42 -0.74 16 37 H 0.12 -0.25 8.06 -52.49 -0.42 -0.67 16 38 H 0.12 -0.23 8.06 -52.49 -0.42 -0.65 16 39 H 0.12 -0.22 8.06 -52.49 -0.42 -0.64 16 40 H 0.08 -0.29 7.89 -51.93 -0.41 -0.70 16 41 H 0.10 -0.26 6.79 -51.93 -0.35 -0.61 16 42 H 0.10 -0.16 8.10 -51.93 -0.42 -0.58 16 43 H 0.09 -0.28 8.10 -51.93 -0.42 -0.70 16 44 H 0.14 -0.45 6.41 -52.48 -0.34 -0.78 16 45 H 0.14 -0.38 4.86 -52.49 -0.26 -0.63 16 LS Contribution 395.38 15.07 5.96 5.96 Total: 0.00 -7.32 395.38 -12.78 -20.11 By element: Atomic # 1 Polarization: -6.22 SS G_CDS: -5.28 Total: -11.50 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -5.47 Total: -3.04 kcal Atomic # 7 Polarization: 0.90 SS G_CDS: -0.31 Total: 0.59 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: -0.36 Total: -3.21 kcal Atomic # 9 Polarization: -0.38 SS G_CDS: 0.04 Total: -0.34 kcal Atomic # 14 Polarization: -1.25 SS G_CDS: -5.06 Total: -6.32 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.29 Total: -2.26 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -7.32 -12.78 -20.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_12335870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.783 kcal (2) G-P(sol) polarization free energy of solvation -7.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds