Wall clock time and date at job start Sat Mar 6 2021 21:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.46840 * 2 1 4 4 C 1.50698 * 109.47211 * 119.99717 * 2 1 3 5 5 C 1.38399 * 119.82402 * 65.00148 * 4 2 1 6 6 C 1.37900 * 120.17015 * 180.02562 * 5 4 2 7 7 C 1.39835 * 119.82406 * 359.97438 * 6 5 4 8 8 C 1.47205 * 120.16807 * 179.97438 * 7 6 5 9 9 C 1.34813 * 119.99824 * 179.97438 * 8 7 6 10 10 C 1.46428 * 119.99818 * 180.02562 * 9 8 7 11 11 O 1.21700 * 120.00122 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00072 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00168 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46948 * 184.98323 * 13 12 10 15 15 C 1.50705 * 112.84875 * 59.65560 * 14 13 12 16 16 C 1.38237 * 119.99781 * 257.12546 * 15 14 13 17 17 C 1.38230 * 119.99994 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00158 * 359.96932 * 17 16 15 19 19 C 1.38240 * 119.99875 * 0.02562 * 18 17 16 20 20 C 1.38230 * 119.99996 * 77.07824 * 15 14 13 21 21 C 1.53777 * 113.69036 * 288.38545 * 14 13 12 22 22 C 1.53777 * 87.08082 * 270.87282 * 21 14 13 23 23 H 1.08998 * 113.61820 * 89.11860 * 22 21 14 24 24 F 1.39906 * 113.61837 * 220.02171 * 22 21 14 25 25 C 1.53779 * 113.61379 * 190.84591 * 14 13 12 26 26 C 1.39838 * 119.66124 * 0.25523 * 7 6 5 27 27 C 1.37894 * 119.82373 * 359.48699 * 26 7 6 28 28 H 0.96700 * 114.00121 * 60.00331 * 1 2 3 29 29 H 1.09001 * 109.47061 * 240.00379 * 2 1 3 30 30 H 1.48502 * 109.99869 * 298.67713 * 3 2 1 31 31 H 1.48495 * 110.00222 * 59.99788 * 3 2 1 32 32 H 1.07999 * 119.92065 * 0.02562 * 5 4 2 33 33 H 1.07993 * 120.08528 * 179.97438 * 6 5 4 34 34 H 1.08000 * 119.99973 * 0.02562 * 8 7 6 35 35 H 1.08000 * 120.00202 * 0.02562 * 9 8 7 36 36 H 0.97006 * 119.99684 * 0.02562 * 12 10 9 37 37 H 1.08995 * 109.46777 * 64.98490 * 13 12 10 38 38 H 1.08996 * 109.46638 * 304.98225 * 13 12 10 39 39 H 1.07997 * 120.00014 * 0.25144 * 16 15 14 40 40 H 1.08003 * 120.00355 * 179.97438 * 17 16 15 41 41 H 1.07995 * 120.00602 * 180.02562 * 18 17 16 42 42 H 1.07998 * 120.00127 * 179.97438 * 19 18 17 43 43 H 1.07996 * 120.00279 * 0.06383 * 20 15 14 44 44 H 1.08991 * 113.61788 * 25.42557 * 21 14 13 45 45 H 1.09002 * 113.61127 * 156.32436 * 21 14 13 46 46 H 1.08993 * 113.61747 * 203.74662 * 25 14 13 47 47 H 1.09000 * 113.61374 * 334.66176 * 25 14 13 48 48 H 1.08001 * 120.08624 * 179.72335 * 26 7 6 49 49 H 1.08003 * 119.91531 * 180.24872 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.6824 -2.0618 1.3949 6 6 2.1383 -2.7188 2.5184 7 6 2.8543 -2.0160 3.4925 8 6 3.3440 -2.7097 4.6950 9 6 4.0343 -2.0289 5.6317 10 6 4.5219 -2.7190 6.8275 11 8 4.3044 -3.9072 6.9756 12 7 5.2116 -2.0384 7.7643 13 6 5.6999 -2.7290 8.9605 14 6 6.3354 -1.7132 9.9120 15 6 5.3717 -0.6417 10.3528 16 6 5.4360 0.6195 9.7904 17 6 4.5517 1.6022 10.1943 18 6 3.6027 1.3236 11.1601 19 6 3.5384 0.0624 11.7224 20 6 4.4229 -0.9203 11.3187 21 6 7.6840 -1.1636 9.4181 22 6 8.3440 -2.3432 10.1514 23 1 8.4417 -3.2390 9.5382 24 9 9.5308 -2.0012 10.8088 25 6 7.1122 -2.3580 11.0720 26 6 3.0975 -0.6496 3.3213 27 6 2.6397 -0.0080 2.1899 28 1 -0.3933 0.4417 -0.7651 29 1 1.7923 -0.5138 -0.8900 30 1 1.5878 2.4585 -1.2243 31 1 1.5614 2.4679 1.2084 32 1 1.1297 -2.6033 0.6415 33 1 1.9429 -3.7733 2.6455 34 1 3.1509 -3.7641 4.8263 35 1 4.2277 -0.9745 5.5001 36 1 5.3846 -1.0912 7.6464 37 1 6.4436 -3.4720 8.6728 38 1 4.8668 -3.2231 9.4602 39 1 6.1741 0.8357 9.0323 40 1 4.6021 2.5877 9.7552 41 1 2.9116 2.0912 11.4754 42 1 2.7973 -0.1551 12.4772 43 1 4.3729 -1.9055 11.7582 44 1 7.8010 -1.2021 8.3352 45 1 7.9391 -0.1906 9.8380 46 1 7.2111 -1.7116 11.9440 47 1 6.7677 -3.3610 11.3241 48 1 3.6459 -0.0992 4.0715 49 1 2.8302 1.0464 2.0542 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_12360594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:27:01 Heat of formation + Delta-G solvation = -15.541203 kcal Electronic energy + Delta-G solvation = -31605.240017 eV Core-core repulsion = 27186.251372 eV Total energy + Delta-G solvation = -4418.988645 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.56899 -41.64282 -40.69551 -40.20729 -38.76254 -37.87467 -35.37746 -35.15019 -32.24864 -32.01321 -31.84913 -31.41845 -28.87883 -27.17541 -26.81745 -25.08492 -24.04798 -23.55701 -23.18483 -22.52487 -21.87051 -20.71905 -19.69359 -18.63415 -18.54534 -18.35061 -17.55977 -17.30936 -17.04907 -16.63885 -16.53032 -16.27241 -16.08028 -15.95514 -15.62785 -15.47695 -15.35992 -15.23825 -14.77130 -14.57254 -14.43008 -14.32743 -14.25407 -14.03152 -13.87620 -13.67009 -13.59375 -13.51243 -13.34383 -13.01015 -12.51413 -12.38602 -12.30207 -12.18648 -12.05297 -11.81807 -11.72315 -11.33582 -11.31774 -11.24793 -11.09140 -10.49839 -10.17275 -9.97737 -9.82154 -9.64854 -9.23637 -4.93068 -0.54806 0.39848 0.41316 0.49316 0.88606 1.29343 1.60058 1.94211 2.10327 2.23768 2.77845 2.82850 3.14675 3.24815 3.37678 3.44397 3.53543 3.61435 3.64020 3.76023 3.84929 3.88732 3.94440 4.12294 4.12525 4.16928 4.21678 4.22746 4.30375 4.32531 4.39377 4.50112 4.55628 4.61040 4.65714 4.69478 4.71414 4.72353 4.84089 4.87458 4.95330 4.97192 5.09561 5.10398 5.14897 5.15626 5.28486 5.34391 5.40591 5.48639 5.57988 5.60084 5.63857 5.64478 5.89733 6.09978 6.49887 6.56208 7.18383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.091 4.091 3 Si 0.767 3.233 4 C -0.075 4.075 5 C -0.108 4.108 6 C -0.102 4.102 7 C -0.081 4.081 8 C -0.019 4.019 9 C -0.210 4.210 10 C 0.544 3.456 11 O -0.590 6.590 12 N -0.707 5.707 13 C 0.147 3.853 14 C -0.042 4.042 15 C -0.071 4.071 16 C -0.120 4.120 17 C -0.124 4.124 18 C -0.134 4.134 19 C -0.131 4.131 20 C -0.124 4.124 21 C -0.143 4.143 22 C 0.055 3.945 23 H 0.125 0.875 24 F -0.224 7.224 25 C -0.141 4.141 26 C -0.095 4.095 27 C -0.125 4.125 28 H 0.395 0.605 29 H 0.095 0.905 30 H -0.289 1.289 31 H -0.295 1.295 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.161 0.839 36 H 0.414 0.586 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.158 0.842 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 4.487 -3.005 5.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.200 4.200 3 Si 0.673 3.327 4 C -0.075 4.075 5 C -0.126 4.126 6 C -0.120 4.120 7 C -0.081 4.081 8 C -0.039 4.039 9 C -0.230 4.230 10 C 0.334 3.666 11 O -0.473 6.473 12 N -0.358 5.358 13 C 0.023 3.977 14 C -0.042 4.042 15 C -0.071 4.071 16 C -0.138 4.138 17 C -0.142 4.142 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.142 4.142 21 C -0.181 4.181 22 C 0.019 3.981 23 H 0.143 0.857 24 F -0.205 7.205 25 C -0.179 4.179 26 C -0.112 4.112 27 C -0.143 4.143 28 H 0.245 0.755 29 H 0.113 0.887 30 H -0.216 1.216 31 H -0.222 1.222 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.142 0.858 35 H 0.179 0.821 36 H 0.251 0.749 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.115 0.885 47 H 0.113 0.887 48 H 0.175 0.825 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.042 4.184 -2.307 5.196 hybrid contribution -1.376 0.068 -0.255 1.402 sum 0.666 4.252 -2.562 5.009 Atomic orbital electron populations 1.86548 1.18549 1.80746 1.51067 1.25101 0.84080 1.12148 0.98633 0.94117 0.90234 0.71974 0.76423 1.19684 0.97858 0.94291 0.95649 1.21108 0.99128 0.94210 0.98178 1.21626 0.96396 1.00793 0.93225 1.19115 1.00162 0.94193 0.94679 1.22352 0.91215 0.99598 0.90693 1.22990 1.03726 1.02048 0.94232 1.18668 0.77593 0.86283 0.84040 1.90822 1.59461 1.17363 1.79640 1.45649 1.55760 1.13926 1.20477 1.21093 0.98682 0.93412 0.84464 1.20581 0.92729 0.94445 0.96461 1.19501 0.96288 0.94350 0.96990 1.21266 0.99660 0.92328 1.00541 1.21440 0.95199 1.00192 0.97325 1.21456 0.99268 0.97167 0.97336 1.21382 0.99350 0.93789 1.00376 1.21146 0.95531 0.99735 0.97785 1.23733 0.92737 0.98971 1.02644 1.23371 0.79338 1.00313 0.95039 0.85737 1.92789 1.50887 1.93807 1.82989 1.23645 0.93871 1.03188 0.97189 1.21629 0.98626 0.93285 0.97685 1.21164 0.98930 1.00372 0.93804 0.75455 0.88698 1.21646 1.22232 0.85086 0.84304 0.85794 0.82135 0.74890 0.90404 0.91708 0.83904 0.84330 0.85176 0.85412 0.85803 0.88193 0.87904 0.88542 0.88701 0.82473 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.96 12.81 -148.98 -1.91 -2.87 16 2 C -0.09 0.14 2.79 71.24 0.20 0.33 16 3 Si 0.77 -2.61 29.83 68.60 2.05 -0.56 16 4 C -0.07 -0.09 5.39 -19.79 -0.11 -0.19 16 5 C -0.11 -0.21 9.66 22.23 0.21 0.01 16 6 C -0.10 -0.15 9.80 22.58 0.22 0.08 16 7 C -0.08 -0.06 5.87 -20.15 -0.12 -0.18 16 8 C -0.02 -0.02 9.46 23.84 0.23 0.20 16 9 C -0.21 0.22 9.41 23.62 0.22 0.44 16 10 C 0.54 2.00 7.74 86.38 0.67 2.67 16 11 O -0.59 -7.52 16.23 -4.35 -0.07 -7.59 16 12 N -0.71 1.64 5.30 -467.34 -2.48 -0.84 16 13 C 0.15 -0.30 4.93 86.38 0.43 0.13 16 14 C -0.04 0.20 0.63 -52.40 -0.03 0.16 16 15 C -0.07 0.18 4.42 -19.86 -0.09 0.09 16 16 C -0.12 0.47 8.43 22.27 0.19 0.66 16 17 C -0.12 0.32 10.05 22.27 0.22 0.54 16 18 C -0.13 0.08 10.05 22.27 0.22 0.31 16 19 C -0.13 -0.05 10.05 22.27 0.22 0.18 16 20 C -0.12 0.01 9.39 22.27 0.21 0.22 16 21 C -0.14 0.85 6.08 31.12 0.19 1.04 16 22 C 0.06 -0.16 5.32 31.12 0.17 0.01 16 23 H 0.13 -0.71 7.60 -2.39 -0.02 -0.73 16 24 F -0.22 -0.94 17.41 44.97 0.78 -0.16 16 25 C -0.14 0.53 6.77 31.12 0.21 0.74 16 26 C -0.09 0.19 9.41 22.58 0.21 0.41 16 27 C -0.13 0.14 8.65 22.23 0.19 0.33 16 28 H 0.40 -2.46 8.74 -74.06 -0.65 -3.11 16 29 H 0.10 -0.49 7.96 -2.39 -0.02 -0.51 16 30 H -0.29 -0.34 7.11 99.48 0.71 0.37 16 31 H -0.29 -0.96 7.04 99.48 0.70 -0.26 16 32 H 0.13 0.06 8.06 -2.91 -0.02 0.04 16 33 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16 34 H 0.12 0.47 7.52 -2.91 -0.02 0.45 16 35 H 0.16 -1.30 6.07 -2.91 -0.02 -1.31 16 36 H 0.41 -3.03 7.68 -92.70 -0.71 -3.74 16 37 H 0.08 -0.17 7.30 -2.39 -0.02 -0.19 16 38 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.14 -1.24 7.03 -2.91 -0.02 -1.26 16 40 H 0.14 -0.86 8.06 -2.91 -0.02 -0.89 16 41 H 0.13 -0.42 8.06 -2.91 -0.02 -0.44 16 42 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 43 H 0.12 -0.18 8.03 -2.91 -0.02 -0.21 16 44 H 0.10 -0.85 8.10 -2.39 -0.02 -0.87 16 45 H 0.10 -0.55 7.45 -2.39 -0.02 -0.57 16 46 H 0.10 -0.19 8.09 -2.39 -0.02 -0.21 16 47 H 0.09 -0.49 8.10 -2.39 -0.02 -0.51 16 48 H 0.16 -1.27 6.17 -2.91 -0.02 -1.29 16 49 H 0.15 -0.71 4.84 -2.91 -0.01 -0.72 16 Total: 0.00 -22.09 409.12 1.91 -20.18 By element: Atomic # 1 Polarization: -15.99 SS G_CDS: -0.33 Total: -16.32 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 3.87 Total: 8.16 kcal Atomic # 7 Polarization: 1.64 SS G_CDS: -2.48 Total: -0.84 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -1.98 Total: -10.46 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.78 Total: -0.16 kcal Atomic # 14 Polarization: -2.61 SS G_CDS: 2.05 Total: -0.56 kcal Total: -22.09 1.91 -20.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_12360594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.636 kcal (2) G-P(sol) polarization free energy of solvation -22.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds