Wall clock time and date at job start Sat Mar 6 2021 21:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47190 * 2 1 4 4 C 1.50701 * 109.47175 * 120.00000 * 2 1 3 5 5 C 1.34841 * 125.65050 * 64.99790 * 4 2 1 6 6 C 1.40791 * 107.04527 * 180.02562 * 5 4 2 7 7 C 1.36114 * 106.73636 * 359.97438 * 6 5 4 8 8 C 1.47565 * 125.94245 * 180.02562 * 7 6 5 9 9 C 1.39566 * 119.95516 * 180.02562 * 8 7 6 10 10 C 1.38320 * 119.81629 * 179.97438 * 9 8 7 11 11 O 1.35675 * 120.13573 * 180.02562 * 10 9 8 12 12 C 1.40367 * 119.72417 * 359.97438 * 10 9 8 13 13 C 1.47286 * 120.04605 * 180.02562 * 12 10 9 14 14 O 1.21629 * 120.00398 * 0.02562 * 13 12 10 15 15 N 1.34777 * 120.00049 * 179.97438 * 13 12 10 16 16 C 1.46506 * 119.99986 * 179.72485 * 15 13 12 17 17 C 1.52999 * 109.47184 * 174.30425 * 16 15 13 18 18 C 1.50709 * 112.84796 * 298.91310 * 17 16 15 19 19 C 1.38234 * 120.00122 * 113.65042 * 18 17 16 20 20 C 1.38230 * 119.99773 * 179.76199 * 19 18 17 21 21 C 1.38234 * 120.00311 * 0.51504 * 20 19 18 22 22 C 1.38237 * 119.99957 * 359.73660 * 21 20 19 23 23 C 1.38235 * 119.99754 * 293.92204 * 18 17 16 24 24 C 1.53776 * 113.61474 * 167.71849 * 17 16 15 25 25 C 1.54052 * 86.98171 * 270.83496 * 24 17 16 26 26 H 1.09003 * 113.61426 * 89.11736 * 25 24 17 27 27 F 1.39908 * 113.62157 * 220.02192 * 25 24 17 28 28 C 1.53780 * 87.08041 * 334.56669 * 25 24 17 29 29 C 1.39914 * 119.90841 * 0.27379 * 12 10 9 30 30 C 1.36397 * 120.18324 * 359.44338 * 29 12 10 31 31 O 1.34235 * 125.65425 * 245.30948 * 4 2 1 32 32 H 0.96702 * 114.00397 * 300.00390 * 1 2 3 33 33 H 1.09002 * 109.46690 * 240.00003 * 2 1 3 34 34 H 1.48500 * 109.99933 * 178.68298 * 3 2 1 35 35 H 1.48500 * 109.99822 * 299.99842 * 3 2 1 36 36 H 1.07997 * 126.47704 * 0.03418 * 5 4 2 37 37 H 1.08000 * 126.63542 * 179.97438 * 6 5 4 38 38 H 1.08001 * 120.09451 * 359.97438 * 9 8 7 39 39 H 0.96697 * 113.99785 * 269.97532 * 11 10 9 40 40 H 0.97001 * 120.00043 * 0.02562 * 15 13 12 41 41 H 1.09002 * 109.47037 * 294.30703 * 16 15 13 42 42 H 1.08999 * 109.47213 * 54.30214 * 16 15 13 43 43 H 1.08003 * 119.99902 * 359.97438 * 19 18 17 44 44 H 1.08004 * 120.00263 * 180.22767 * 20 19 18 45 45 H 1.07996 * 120.00297 * 179.72284 * 21 20 19 46 46 H 1.08003 * 120.00460 * 179.97438 * 22 21 20 47 47 H 1.07997 * 120.00103 * 0.02562 * 23 18 17 48 48 H 1.08999 * 113.61741 * 25.42959 * 24 17 16 49 49 H 1.09000 * 113.61220 * 156.33897 * 24 17 16 50 50 H 1.08991 * 113.61606 * 270.88012 * 28 25 24 51 51 H 1.08998 * 113.61574 * 139.97222 * 28 25 24 52 52 H 1.08003 * 119.91059 * 179.71936 * 29 12 10 53 53 H 1.08007 * 119.85764 * 180.24960 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7567 -2.0181 1.5093 6 6 2.3800 -2.2627 2.7478 7 6 2.9075 -1.0783 3.1619 8 6 3.6566 -0.8541 4.4133 9 6 4.1437 0.4184 4.7155 10 6 4.8452 0.6254 5.8896 11 8 5.3211 1.8599 6.1901 12 6 5.0615 -0.4467 6.7693 13 6 5.8070 -0.2341 8.0217 14 8 6.2352 0.8711 8.2945 15 7 6.0138 -1.2641 8.8660 16 6 6.7605 -1.0540 10.1088 17 6 6.7303 -2.3351 10.9448 18 6 5.3341 -2.7453 11.3367 19 6 4.7888 -3.9110 10.8319 20 6 3.5101 -4.2897 11.1952 21 6 2.7725 -3.4975 12.0550 22 6 3.3158 -2.3292 12.5558 23 6 4.5966 -1.9531 12.1966 24 6 7.7227 -2.3277 12.1194 25 6 8.7553 -2.9248 11.1445 26 1 9.3306 -2.1733 10.6036 27 9 9.5583 -3.9172 11.7170 28 6 7.5639 -3.4807 10.3468 29 6 4.5726 -1.7188 6.4524 30 6 3.8764 -1.9175 5.2964 31 8 2.6217 -0.1451 2.2333 32 1 -0.3934 0.4417 0.7650 33 1 1.7922 -0.5139 -0.8900 34 1 3.5346 1.7702 0.0321 35 1 1.5615 2.4678 -1.2085 36 1 1.2371 -2.7411 0.8981 37 1 2.4299 -3.2075 3.2687 38 1 3.9735 1.2392 4.0346 39 1 6.2142 2.0282 5.8598 40 1 5.6720 -2.1455 8.6487 41 1 7.7935 -0.7981 9.8732 42 1 6.3045 -0.2408 10.6736 43 1 5.3632 -4.5275 10.1562 44 1 3.0853 -5.2023 10.8037 45 1 1.7718 -3.7912 12.3354 46 1 2.7395 -1.7099 13.2272 47 1 5.0209 -1.0400 12.5872 48 1 7.9779 -1.3274 12.4692 49 1 7.4458 -3.0026 12.9292 50 1 7.2437 -4.4701 10.6729 51 1 7.6909 -3.4105 9.2665 52 1 4.7430 -2.5447 7.1272 53 1 3.4979 -2.9007 5.0590 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_12807986.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:27:25 Heat of formation + Delta-G solvation = -49.062887 kcal Electronic energy + Delta-G solvation = -40146.980319 eV Core-core repulsion = 34832.721400 eV Total energy + Delta-G solvation = -5314.258919 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 424.156 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -48.56078 -43.74484 -41.83840 -41.12157 -39.60042 -38.69393 -38.08935 -37.82205 -35.39728 -34.24053 -33.42535 -32.00076 -31.83254 -31.32461 -30.59572 -28.62626 -27.15916 -26.77563 -25.11761 -24.24674 -24.02140 -23.20874 -22.52774 -22.39187 -21.91678 -21.30701 -20.24314 -19.57012 -18.75111 -18.52146 -18.28807 -17.68221 -17.53484 -17.44197 -17.17246 -16.65262 -16.52445 -16.42131 -16.19550 -16.11778 -15.90108 -15.75286 -15.51676 -15.49378 -15.33918 -14.88870 -14.58717 -14.41953 -14.38299 -14.28300 -14.21776 -13.99040 -13.87538 -13.67342 -13.59413 -13.55794 -13.46804 -13.30613 -12.82962 -12.72201 -12.48045 -12.40338 -12.26181 -12.17703 -11.90480 -11.75851 -11.32477 -11.23861 -11.13300 -10.95381 -10.73602 -10.58688 -10.16440 -9.94952 -9.80757 -9.62993 -9.01485 -5.04735 -0.79320 0.14757 0.42566 0.50997 0.64274 1.13262 1.39621 1.45819 1.73811 1.86581 1.91879 1.99640 2.64535 2.83846 3.01821 3.14858 3.25039 3.29254 3.41438 3.43913 3.54478 3.59849 3.64031 3.72256 3.87376 3.88794 3.98598 4.00623 4.13230 4.14048 4.21682 4.22861 4.31023 4.31330 4.40293 4.49851 4.59267 4.65659 4.66114 4.68381 4.69879 4.71473 4.73665 4.79511 4.87245 4.89354 4.96537 5.06221 5.09839 5.11814 5.16296 5.21332 5.28988 5.30868 5.42307 5.53182 5.59647 5.65545 5.66371 5.96561 6.11463 6.43023 6.59136 6.70708 7.13659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.024 4.024 3 Si 0.767 3.233 4 C -0.053 4.053 5 C -0.184 4.184 6 C -0.173 4.173 7 C 0.006 3.994 8 C 0.026 3.974 9 C -0.152 4.152 10 C 0.162 3.838 11 O -0.494 6.494 12 C -0.179 4.179 13 C 0.557 3.443 14 O -0.561 6.561 15 N -0.708 5.708 16 C 0.148 3.852 17 C -0.042 4.042 18 C -0.071 4.071 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.123 4.123 24 C -0.140 4.140 25 C 0.055 3.945 26 H 0.125 0.875 27 F -0.224 7.224 28 C -0.146 4.146 29 C -0.052 4.052 30 C -0.110 4.110 31 O -0.174 6.174 32 H 0.399 0.601 33 H 0.139 0.861 34 H -0.294 1.294 35 H -0.278 1.278 36 H 0.165 0.835 37 H 0.181 0.819 38 H 0.141 0.859 39 H 0.408 0.592 40 H 0.411 0.589 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.130 0.870 46 H 0.126 0.874 47 H 0.121 0.879 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.107 0.893 51 H 0.100 0.900 52 H 0.166 0.834 53 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 -5.354 -0.164 5.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.135 4.135 3 Si 0.672 3.328 4 C -0.103 4.103 5 C -0.203 4.203 6 C -0.191 4.191 7 C -0.044 4.044 8 C 0.025 3.975 9 C -0.170 4.170 10 C 0.116 3.884 11 O -0.307 6.307 12 C -0.182 4.182 13 C 0.345 3.655 14 O -0.441 6.441 15 N -0.361 5.361 16 C 0.025 3.975 17 C -0.043 4.043 18 C -0.071 4.071 19 C -0.139 4.139 20 C -0.140 4.140 21 C -0.151 4.151 22 C -0.149 4.149 23 C -0.141 4.141 24 C -0.178 4.178 25 C 0.019 3.981 26 H 0.142 0.858 27 F -0.205 7.205 28 C -0.183 4.183 29 C -0.071 4.071 30 C -0.127 4.127 31 O -0.072 6.072 32 H 0.250 0.750 33 H 0.156 0.844 34 H -0.221 1.221 35 H -0.204 1.204 36 H 0.183 0.817 37 H 0.199 0.801 38 H 0.159 0.841 39 H 0.269 0.731 40 H 0.249 0.751 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.163 0.837 44 H 0.158 0.842 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.139 0.861 48 H 0.112 0.888 49 H 0.114 0.886 50 H 0.125 0.875 51 H 0.119 0.881 52 H 0.184 0.816 53 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.570 -3.918 -0.602 4.264 hybrid contribution 0.359 -0.749 -0.236 0.864 sum -1.211 -4.667 -0.838 4.894 Atomic orbital electron populations 1.86531 1.15927 1.82077 1.50344 1.24418 0.85389 1.10909 0.92764 0.93338 0.78210 0.75869 0.85387 1.23230 1.00622 0.94279 0.92165 1.21835 1.04181 0.95831 0.98484 1.22235 1.00828 0.98997 0.97075 1.20568 1.04516 0.87858 0.91409 1.17929 0.95388 0.93962 0.90196 1.21594 1.00883 0.97683 0.96887 1.18466 0.94622 0.84136 0.91217 1.84729 1.37290 1.28408 1.80299 1.20511 1.05554 0.95301 0.96877 1.18164 0.79397 0.84155 0.83737 1.90830 1.51904 1.25075 1.76286 1.45642 1.56992 1.12374 1.21052 1.21119 0.96925 0.95569 0.83927 1.20584 0.91544 0.95197 0.96933 1.19475 0.94353 0.95536 0.97762 1.21318 0.95718 0.96284 1.00554 1.21440 0.94727 1.00176 0.97667 1.21449 1.00720 0.95049 0.97873 1.21367 0.95788 0.97444 1.00320 1.21115 0.94770 0.99878 0.98379 1.23681 0.93775 1.03552 0.96794 1.23423 0.89529 0.89169 0.95941 0.85769 1.92790 1.76646 1.64589 1.86438 1.23772 0.93513 0.99060 1.01952 1.21112 0.94157 0.95117 0.96686 1.21034 0.99264 0.99439 0.92990 1.83920 1.58118 1.38318 1.26795 0.75011 0.84411 1.22111 1.20411 0.81719 0.80123 0.84142 0.73144 0.75083 0.90250 0.91585 0.83712 0.84238 0.85178 0.85597 0.86130 0.88773 0.88585 0.87508 0.88125 0.81625 0.81418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.98 12.88 -148.98 -1.92 -0.94 16 2 C -0.02 0.04 2.98 71.24 0.21 0.25 16 3 Si 0.77 -0.84 32.11 68.60 2.20 1.36 16 4 C -0.05 -0.03 6.20 24.91 0.15 0.12 16 5 C -0.18 0.08 10.78 22.11 0.24 0.31 16 6 C -0.17 0.33 10.26 22.40 0.23 0.56 16 7 C 0.01 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 -0.01 5.87 -20.08 -0.12 -0.12 16 9 C -0.15 -0.36 9.65 22.61 0.22 -0.14 16 10 C 0.16 0.69 6.71 22.81 0.15 0.84 16 11 O -0.49 -3.28 11.56 -68.93 -0.80 -4.08 16 12 C -0.18 -0.28 5.89 -19.97 -0.12 -0.40 16 13 C 0.56 2.33 7.75 86.62 0.67 3.00 16 14 O -0.56 -6.95 15.13 16.87 0.26 -6.70 16 15 N -0.71 1.99 5.24 -466.48 -2.45 -0.46 16 16 C 0.15 -0.43 4.82 86.38 0.42 -0.01 16 17 C -0.04 0.24 0.63 -52.40 -0.03 0.21 16 18 C -0.07 0.24 4.45 -19.86 -0.09 0.15 16 19 C -0.12 0.62 9.05 22.27 0.20 0.82 16 20 C -0.12 0.46 10.05 22.27 0.22 0.68 16 21 C -0.13 0.20 10.05 22.27 0.22 0.42 16 22 C -0.13 0.02 10.05 22.27 0.22 0.24 16 23 C -0.12 0.07 9.41 22.27 0.21 0.28 16 24 C -0.14 0.62 7.02 31.21 0.22 0.84 16 25 C 0.06 -0.21 5.32 31.21 0.17 -0.05 16 26 H 0.12 -0.83 7.59 -2.39 -0.02 -0.84 16 27 F -0.22 -0.74 17.41 44.97 0.78 0.04 16 28 C -0.15 1.06 6.12 31.12 0.19 1.25 16 29 C -0.05 0.28 9.47 22.25 0.21 0.49 16 30 C -0.11 0.59 9.48 22.26 0.21 0.80 16 31 O -0.17 -0.44 8.79 -5.93 -0.05 -0.49 16 32 H 0.40 -3.67 8.70 -74.06 -0.64 -4.31 16 33 H 0.14 -0.38 7.96 -2.39 -0.02 -0.40 16 34 H -0.29 -1.69 7.11 99.48 0.71 -0.99 16 35 H -0.28 -1.15 7.11 99.48 0.71 -0.44 16 36 H 0.17 -0.48 8.06 -2.91 -0.02 -0.51 16 37 H 0.18 -1.45 7.24 -2.91 -0.02 -1.47 16 38 H 0.14 0.27 7.90 -2.91 -0.02 0.25 16 39 H 0.41 -0.19 9.06 -74.06 -0.67 -0.86 16 40 H 0.41 -3.29 6.26 -92.71 -0.58 -3.87 16 41 H 0.08 -0.26 7.30 -2.39 -0.02 -0.28 16 42 H 0.07 0.05 8.04 -2.39 -0.02 0.04 16 43 H 0.15 -1.43 6.44 -2.91 -0.02 -1.45 16 44 H 0.14 -1.05 8.06 -2.91 -0.02 -1.07 16 45 H 0.13 -0.52 8.06 -2.91 -0.02 -0.55 16 46 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 47 H 0.12 -0.16 8.06 -2.91 -0.02 -0.18 16 48 H 0.09 -0.53 8.10 -2.39 -0.02 -0.55 16 49 H 0.10 -0.25 8.09 -2.39 -0.02 -0.27 16 50 H 0.11 -0.77 6.82 -2.39 -0.02 -0.79 16 51 H 0.10 -1.01 8.10 -2.39 -0.02 -1.03 16 52 H 0.17 -2.05 6.38 -2.91 -0.02 -2.07 16 53 H 0.17 -1.93 6.96 -2.91 -0.02 -1.95 16 Total: 0.00 -25.75 447.60 1.37 -24.38 By element: Atomic # 1 Polarization: -23.01 SS G_CDS: -0.85 Total: -23.86 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 4.19 Total: 10.73 kcal Atomic # 7 Polarization: 1.99 SS G_CDS: -2.45 Total: -0.46 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -2.51 Total: -12.20 kcal Atomic # 9 Polarization: -0.74 SS G_CDS: 0.78 Total: 0.04 kcal Atomic # 14 Polarization: -0.84 SS G_CDS: 2.20 Total: 1.36 kcal Total: -25.75 1.37 -24.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_12807986.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.682 kcal (2) G-P(sol) polarization free energy of solvation -25.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds