Wall clock time and date at job start Sat Mar 6 2021 21:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39284 * 121.02931 * 2 1 4 4 C 1.46502 * 134.20161 * 359.89556 * 3 2 1 5 5 C 1.50705 * 126.59703 * 0.36125 * 4 3 2 6 6 O 1.42900 * 109.47186 * 285.00008 * 5 4 3 7 7 Si 1.86304 * 109.46960 * 165.00141 * 5 4 3 8 8 C 1.34177 * 106.80577 * 180.36219 * 4 3 2 9 9 N 1.36948 * 109.94890 * 0.02562 * 8 4 3 10 10 C 1.37151 * 110.11661 * 359.97438 * 9 8 4 11 11 N 1.32820 * 132.97072 * 180.02562 * 10 9 8 12 12 C 1.31301 * 121.89568 * 180.02562 * 11 10 9 13 13 C 1.39742 * 121.03241 * 179.72788 * 2 1 3 14 14 C 1.47664 * 120.45605 * 0.02562 * 13 2 1 15 15 O 1.21572 * 119.99717 * 353.56585 * 14 13 2 16 16 N 1.34773 * 120.00226 * 173.57565 * 14 13 2 17 17 C 1.46496 * 120.00294 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47336 * 184.64116 * 17 16 14 19 19 C 1.50699 * 112.84596 * 66.08825 * 18 17 16 20 20 C 1.38244 * 119.99542 * 245.95379 * 19 18 17 21 21 C 1.38230 * 119.99884 * 179.78790 * 20 19 18 22 22 C 1.38235 * 120.00035 * 0.44434 * 21 20 19 23 23 C 1.38236 * 120.00179 * 359.81213 * 22 21 20 24 24 C 1.38235 * 120.00487 * 66.23043 * 19 18 17 25 25 C 1.53776 * 113.61663 * 294.88687 * 18 17 16 26 26 C 1.53781 * 87.08294 * 270.88732 * 25 18 17 27 27 H 1.08997 * 113.62109 * 89.19895 * 26 25 18 28 28 F 1.39909 * 113.61294 * 220.02093 * 26 25 18 29 29 C 1.53786 * 113.61203 * 197.38807 * 18 17 16 30 30 H 1.09001 * 109.46972 * 263.95725 * 1 2 3 31 31 H 1.09000 * 109.47386 * 23.96128 * 1 2 3 32 32 H 1.09000 * 109.46738 * 143.95603 * 1 2 3 33 33 H 1.08995 * 109.46680 * 45.00350 * 5 4 3 34 34 H 0.96698 * 114.00049 * 180.02562 * 6 5 4 35 35 H 1.48497 * 109.99797 * 59.99980 * 7 5 4 36 36 H 1.48495 * 109.99567 * 181.31990 * 7 5 4 37 37 H 1.07993 * 125.02753 * 180.02562 * 8 4 3 38 38 H 0.97005 * 124.94306 * 180.02562 * 9 8 4 39 39 H 1.08005 * 119.31167 * 180.02562 * 12 11 10 40 40 H 0.97005 * 119.99772 * 359.97438 * 16 14 13 41 41 H 1.09003 * 109.47052 * 64.64245 * 17 16 14 42 42 H 1.09001 * 109.47041 * 304.64724 * 17 16 14 43 43 H 1.07999 * 119.99797 * 0.02562 * 20 19 18 44 44 H 1.08000 * 120.00314 * 180.27393 * 21 20 19 45 45 H 1.08001 * 120.00702 * 179.83228 * 22 21 20 46 46 H 1.07996 * 120.00859 * 180.02562 * 23 22 21 47 47 H 1.07998 * 119.99798 * 359.97438 * 24 19 18 48 48 H 1.09000 * 113.61490 * 25.43023 * 25 18 17 49 49 H 1.09002 * 113.61323 * 156.25069 * 25 18 17 50 50 H 1.08997 * 113.61155 * 203.66589 * 29 18 17 51 51 H 1.08993 * 113.61725 * 334.56808 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8515 2.6101 -0.0019 5 6 0.4525 3.1705 0.0030 6 8 -0.1252 3.0206 -1.2954 7 14 0.5090 4.9776 0.4527 8 6 2.9946 3.3127 -0.0089 9 7 4.0668 2.4606 -0.0122 10 6 3.6348 1.1589 -0.0067 11 7 4.2720 -0.0064 -0.0066 12 6 3.6267 -1.1500 -0.0010 13 6 2.2274 -1.1974 0.0057 14 6 1.5226 -2.4949 0.0113 15 8 0.3130 -2.5291 0.1290 16 7 2.2201 -3.6413 -0.1139 17 6 1.5209 -4.9286 -0.1078 18 6 2.5444 -6.0652 -0.1472 19 6 3.3887 -6.1359 1.0991 20 6 4.7452 -5.8783 1.0305 21 6 5.5188 -5.9388 2.1744 22 6 4.9378 -6.2658 3.3853 23 6 3.5823 -6.5286 3.4530 24 6 2.8078 -6.4638 2.3098 25 6 3.3620 -6.1130 -1.4488 26 6 2.2562 -7.0176 -2.0177 27 1 1.4489 -6.4684 -2.5023 28 9 2.7413 -8.0720 -2.7990 29 6 1.9461 -7.4187 -0.5658 30 1 -0.3633 -0.1082 1.0220 31 1 -0.3634 0.9391 -0.4173 32 1 -0.3633 -0.8309 -0.6047 33 1 -0.1515 2.6329 0.7338 34 1 -1.0276 3.3609 -1.3660 35 1 1.3298 5.7216 -0.5361 36 1 -0.8671 5.5343 0.4922 37 1 3.0597 4.3907 -0.0116 38 1 4.9965 2.7374 -0.0169 39 1 4.1871 -2.0733 -0.0007 40 1 3.1852 -3.6140 -0.2080 41 1 0.8718 -4.9937 -0.9811 42 1 0.9204 -5.0117 0.7981 43 1 5.1997 -5.6261 0.0838 44 1 6.5778 -5.7333 2.1216 45 1 5.5427 -6.3158 4.2786 46 1 3.1282 -6.7836 4.3991 47 1 1.7488 -6.6689 2.3627 48 1 3.4392 -5.1490 -1.9516 49 1 4.3247 -6.6128 -1.3415 50 1 2.5212 -8.2766 -0.2176 51 1 0.8804 -7.5087 -0.3558 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_12890568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:27:30 Heat of formation + Delta-G solvation = 19.005016 kcal Electronic energy + Delta-G solvation = -37209.179638 eV Core-core repulsion = 32377.073449 eV Total energy + Delta-G solvation = -4832.106190 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -48.56368 -42.85896 -41.65404 -40.57950 -38.89620 -38.58642 -37.84856 -35.67629 -34.89373 -32.15414 -32.01281 -31.82689 -31.30468 -29.08997 -28.23115 -27.08823 -26.38546 -25.16834 -24.48113 -23.79923 -23.19267 -22.49322 -21.81258 -20.41645 -19.96491 -19.26482 -18.72301 -18.48143 -18.28140 -17.67123 -17.37999 -17.13190 -16.66363 -16.54725 -16.47417 -16.03783 -15.92710 -15.72262 -15.51228 -15.47430 -15.23568 -15.05641 -14.75887 -14.62087 -14.47491 -14.26214 -14.09738 -14.00517 -13.74246 -13.63714 -13.61670 -13.46063 -13.37349 -13.23499 -12.96961 -12.66388 -12.46595 -12.38784 -12.17298 -11.99182 -11.76343 -11.32281 -11.23718 -11.18493 -11.11066 -10.52743 -10.26772 -10.18262 -9.80298 -9.63376 -9.61737 -9.13748 -4.85006 -0.35093 -0.09142 0.43149 0.51529 1.33276 1.39825 1.61754 1.70352 1.79642 1.99492 2.00813 2.74747 2.84368 3.16001 3.25042 3.29804 3.36910 3.44588 3.56386 3.58344 3.64661 3.67979 3.74606 3.80166 3.89504 4.12386 4.13476 4.14707 4.17167 4.22506 4.30248 4.32725 4.44848 4.51591 4.58539 4.64204 4.66473 4.68607 4.69976 4.72937 4.74520 4.76767 4.88230 4.97274 4.99014 5.11709 5.16303 5.17261 5.24258 5.29212 5.32962 5.43103 5.60026 5.66141 5.66520 5.72351 6.11834 6.20460 6.42287 6.65954 6.81480 7.13109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.064 3.936 3 C -0.167 4.167 4 C -0.160 4.160 5 C -0.060 4.060 6 O -0.557 6.557 7 Si 0.775 3.225 8 C 0.088 3.912 9 N -0.560 5.560 10 C 0.289 3.711 11 N -0.514 5.514 12 C 0.180 3.820 13 C -0.241 4.241 14 C 0.573 3.427 15 O -0.562 6.562 16 N -0.709 5.709 17 C 0.149 3.851 18 C -0.041 4.041 19 C -0.070 4.070 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.134 4.134 23 C -0.130 4.130 24 C -0.121 4.121 25 C -0.149 4.149 26 C 0.055 3.945 27 H 0.124 0.876 28 F -0.224 7.224 29 C -0.137 4.137 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.392 0.608 35 H -0.277 1.277 36 H -0.290 1.290 37 H 0.217 0.783 38 H 0.439 0.561 39 H 0.189 0.811 40 H 0.409 0.591 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.141 0.859 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.126 0.874 48 H 0.097 0.903 49 H 0.105 0.895 50 H 0.096 0.904 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.674 3.546 3.236 5.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.055 3.945 3 C -0.174 4.174 4 C -0.167 4.167 5 C -0.168 4.168 6 O -0.367 6.367 7 Si 0.678 3.322 8 C -0.039 4.039 9 N -0.167 5.167 10 C 0.055 3.945 11 N -0.228 5.228 12 C 0.011 3.989 13 C -0.248 4.248 14 C 0.361 3.639 15 O -0.442 6.442 16 N -0.361 5.361 17 C 0.026 3.974 18 C -0.042 4.042 19 C -0.071 4.071 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.187 4.187 26 C 0.020 3.980 27 H 0.142 0.858 28 F -0.205 7.205 29 C -0.175 4.175 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.242 0.758 35 H -0.204 1.204 36 H -0.217 1.217 37 H 0.233 0.767 38 H 0.280 0.720 39 H 0.205 0.795 40 H 0.247 0.753 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.159 0.841 44 H 0.154 0.846 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.144 0.856 48 H 0.115 0.885 49 H 0.124 0.876 50 H 0.115 0.885 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.264 4.176 2.921 6.052 hybrid contribution -0.903 -0.593 -0.766 1.324 sum 2.361 3.583 2.156 4.802 Atomic orbital electron populations 1.21089 0.89146 1.04011 1.03343 1.20065 0.97297 0.89934 0.87182 1.19766 0.93359 0.94375 1.09916 1.19721 0.94477 0.90031 1.12434 1.24472 0.91467 1.13334 0.87545 1.86593 1.34795 1.84307 1.31024 0.94114 0.80462 0.70506 0.87111 1.22237 0.84178 0.97107 1.00383 1.41567 1.10512 1.01768 1.62818 1.18749 0.89514 0.86791 0.99444 1.66493 1.40827 0.96390 1.19053 1.22892 0.89834 0.95114 0.91070 1.20491 0.95331 0.93480 1.15496 1.17879 0.86393 0.83755 0.75847 1.90742 1.14860 1.87489 1.51140 1.45634 1.11380 1.04916 1.74207 1.21144 0.93199 0.80001 1.03097 1.20578 0.95634 0.95438 0.92552 1.19476 0.93877 1.00142 0.93557 1.21306 0.93095 1.00286 0.99350 1.21423 1.00828 0.99369 0.92679 1.21445 0.95373 0.99605 0.98741 1.21379 0.94476 1.00002 0.98942 1.21135 1.00366 1.00014 0.92398 1.23786 0.98781 1.01656 0.94453 1.23367 0.98504 0.86278 0.89876 0.85809 1.92789 1.89703 1.60394 1.77615 1.23617 1.03560 0.96453 0.93868 0.90172 0.90022 0.89976 0.90157 0.75789 1.20373 1.21705 0.76704 0.72016 0.79467 0.75336 0.90249 0.90979 0.84118 0.84617 0.85201 0.85305 0.85609 0.88495 0.87627 0.88543 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 8.45 71.24 0.60 -0.27 16 2 C 0.06 0.52 5.98 -19.25 -0.12 0.40 16 3 C -0.17 -1.18 6.16 -20.19 -0.12 -1.30 16 4 C -0.16 -0.39 5.61 -18.63 -0.10 -0.49 16 5 C -0.06 0.04 1.87 71.24 0.13 0.17 16 6 O -0.56 -1.22 11.62 -148.98 -1.73 -2.95 16 7 Si 0.78 -3.86 30.80 68.60 2.11 -1.75 16 8 C 0.09 -0.22 10.44 82.97 0.87 0.64 16 9 N -0.56 0.60 6.04 -192.26 -1.16 -0.57 16 10 C 0.29 1.65 8.42 134.03 1.13 2.77 16 11 N -0.51 -3.02 10.37 -191.75 -1.99 -5.01 16 12 C 0.18 0.51 10.67 85.20 0.91 1.42 16 13 C -0.24 -1.41 5.89 -19.99 -0.12 -1.53 16 14 C 0.57 3.19 7.71 86.73 0.67 3.86 16 15 O -0.56 -6.53 13.50 -3.94 -0.05 -6.58 16 16 N -0.71 0.86 5.13 -466.15 -2.39 -1.53 16 17 C 0.15 -0.34 4.85 86.38 0.42 0.08 16 18 C -0.04 0.19 0.63 -52.40 -0.03 0.16 16 19 C -0.07 0.15 4.68 -19.86 -0.09 0.06 16 20 C -0.12 0.35 9.05 22.27 0.20 0.55 16 21 C -0.13 0.19 10.05 22.27 0.22 0.41 16 22 C -0.13 0.02 10.05 22.27 0.22 0.24 16 23 C -0.13 -0.05 10.05 22.27 0.22 0.18 16 24 C -0.12 0.03 9.33 22.27 0.21 0.24 16 25 C -0.15 0.79 5.98 31.12 0.19 0.98 16 26 C 0.06 -0.14 5.32 31.12 0.17 0.02 16 27 H 0.12 -0.65 7.61 -2.39 -0.02 -0.67 16 28 F -0.22 -1.02 17.41 44.97 0.78 -0.24 16 29 C -0.14 0.53 7.00 31.12 0.22 0.74 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.47 4.80 -2.39 -0.01 0.46 16 32 H 0.08 0.85 5.97 -2.39 -0.01 0.84 16 33 H 0.08 -0.17 7.15 -2.39 -0.02 -0.18 16 34 H 0.39 -2.19 8.74 -74.06 -0.65 -2.83 16 35 H -0.28 0.23 7.04 99.48 0.70 0.93 16 36 H -0.29 -0.10 7.11 99.48 0.71 0.61 16 37 H 0.22 -2.15 6.31 -2.91 -0.02 -2.17 16 38 H 0.44 -3.00 8.96 -92.70 -0.83 -3.83 16 39 H 0.19 -0.87 6.43 -2.91 -0.02 -0.89 16 40 H 0.41 -2.21 6.15 -92.70 -0.57 -2.78 16 41 H 0.08 -0.20 7.31 -2.39 -0.02 -0.22 16 42 H 0.07 0.02 7.95 -2.39 -0.02 0.00 16 43 H 0.14 -0.96 6.42 -2.91 -0.02 -0.98 16 44 H 0.14 -0.64 8.06 -2.91 -0.02 -0.66 16 45 H 0.13 -0.36 8.06 -2.91 -0.02 -0.38 16 46 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 47 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 48 H 0.10 -0.71 7.75 -2.39 -0.02 -0.73 16 49 H 0.11 -0.53 6.80 -2.39 -0.02 -0.55 16 50 H 0.10 -0.20 8.10 -2.39 -0.02 -0.22 16 51 H 0.10 -0.55 8.10 -2.39 -0.02 -0.57 16 Total: 0.00 -24.50 412.10 0.38 -24.12 By element: Atomic # 1 Polarization: -13.86 SS G_CDS: -0.98 Total: -14.84 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 5.79 Total: 9.35 kcal Atomic # 7 Polarization: -1.57 SS G_CDS: -5.54 Total: -7.11 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -1.78 Total: -9.53 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.78 Total: -0.24 kcal Atomic # 14 Polarization: -3.86 SS G_CDS: 2.11 Total: -1.75 kcal Total: -24.50 0.38 -24.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_12890568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.127 kcal (2) G-P(sol) polarization free energy of solvation -24.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds