Wall clock time and date at job start Sat Mar 6 2021 21:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.47092 * 2 1 4 4 C 1.50703 * 109.47082 * 120.00201 * 2 1 3 5 5 C 1.34697 * 125.66530 * 64.99493 * 4 2 1 6 6 C 1.40972 * 107.02938 * 179.97438 * 5 4 2 7 7 C 1.35937 * 106.73921 * 0.02562 * 6 5 4 8 8 C 1.47812 * 125.92589 * 180.02562 * 7 6 5 9 9 C 1.39182 * 120.00049 * 179.72505 * 8 7 6 10 10 C 1.39466 * 119.75875 * 179.70194 * 9 8 7 11 11 C 1.47557 * 120.12136 * 180.31196 * 10 9 8 12 12 O 1.21582 * 120.00339 * 180.22941 * 11 10 9 13 13 N 1.34783 * 120.00079 * 0.23782 * 11 10 9 14 14 C 1.46494 * 120.00247 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47465 * 179.40577 * 14 13 11 16 16 C 1.50698 * 112.85283 * 66.20108 * 15 14 13 17 17 C 1.38234 * 120.00146 * 245.85775 * 16 15 14 18 18 C 1.38239 * 119.99685 * 179.78648 * 17 16 15 19 19 C 1.38231 * 120.00339 * 0.45738 * 18 17 16 20 20 C 1.38235 * 119.99817 * 359.76607 * 19 18 17 21 21 C 1.38231 * 120.00034 * 0.02728 * 20 19 18 22 22 C 1.53784 * 113.61346 * 295.00395 * 15 14 13 23 23 C 1.53769 * 87.08166 * 270.88286 * 22 15 14 24 24 H 1.08999 * 113.61971 * 89.11974 * 23 22 15 25 25 F 1.39911 * 113.61473 * 219.93336 * 23 22 15 26 26 C 1.53778 * 87.08573 * 334.56710 * 23 22 15 27 27 C 1.40215 * 119.75463 * 0.54830 * 10 9 8 28 28 O 1.35649 * 119.99818 * 179.72454 * 27 10 9 29 29 C 1.38809 * 119.99490 * 359.74785 * 27 10 9 30 30 C 1.37766 * 120.25001 * 359.97438 * 29 27 10 31 31 O 1.34345 * 125.66285 * 244.69467 * 4 2 1 32 32 H 0.96700 * 113.99718 * 300.00277 * 1 2 3 33 33 H 1.09002 * 109.47139 * 240.00170 * 2 1 3 34 34 H 1.48493 * 110.00288 * 299.99633 * 3 2 1 35 35 H 1.48492 * 110.00133 * 61.32057 * 3 2 1 36 36 H 1.08004 * 126.48672 * 359.97438 * 5 4 2 37 37 H 1.08001 * 126.62562 * 179.97438 * 6 5 4 38 38 H 1.08001 * 120.11392 * 359.97438 * 9 8 7 39 39 H 0.96996 * 119.99898 * 359.97438 * 13 11 10 40 40 H 1.08998 * 109.47392 * 299.40606 * 14 13 11 41 41 H 1.09006 * 109.47264 * 59.40501 * 14 13 11 42 42 H 1.07997 * 120.00228 * 359.97438 * 17 16 15 43 43 H 1.08001 * 119.99635 * 180.24702 * 18 17 16 44 44 H 1.07997 * 120.00176 * 179.79765 * 19 18 17 45 45 H 1.08004 * 119.99962 * 179.97438 * 20 19 18 46 46 H 1.08001 * 120.00378 * 179.97438 * 21 20 19 47 47 H 1.08995 * 113.61313 * 25.43692 * 22 15 14 48 48 H 1.09003 * 113.61349 * 156.24681 * 22 15 14 49 49 H 1.09007 * 113.61521 * 270.88594 * 26 23 22 50 50 H 1.08997 * 113.61560 * 139.98451 * 26 23 22 51 51 H 0.96694 * 114.00021 * 270.01722 * 28 27 10 52 52 H 1.07998 * 119.87659 * 180.02562 * 29 27 10 53 53 H 1.08001 * 119.88098 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7570 -2.0167 1.5093 6 6 2.3823 -2.2613 2.7489 7 6 2.9085 -1.0780 3.1621 8 6 3.6598 -0.8534 4.4151 9 6 4.1508 0.4141 4.7145 10 6 4.8536 0.6217 5.9012 11 6 5.3717 1.9637 6.2298 12 8 5.9876 2.1413 7.2629 13 7 5.1619 2.9926 5.3849 14 6 5.6758 4.3250 5.7114 15 6 5.3162 5.2997 4.5883 16 6 3.8324 5.5347 4.4700 17 6 3.1537 5.1137 3.3417 18 6 1.7918 5.3254 3.2352 19 6 1.1102 5.9663 4.2528 20 6 1.7897 6.3913 5.3791 21 6 3.1508 6.1759 5.4875 22 6 5.9971 4.9739 3.2484 23 6 7.1639 5.8597 3.7158 24 1 7.9253 5.3185 4.2774 25 9 7.7025 6.6585 2.7012 26 6 6.1471 6.5936 4.6059 27 6 5.0702 -0.4505 6.7783 28 8 5.7580 -0.2554 7.9311 29 6 4.5814 -1.7118 6.4666 30 6 3.8822 -1.9156 5.2972 31 8 2.6323 -0.1474 2.2287 32 1 -0.3933 0.4417 0.7650 33 1 1.7923 -0.5138 -0.8900 34 1 1.5616 2.4679 -1.2085 35 1 1.5879 2.4585 1.2242 36 1 1.2366 -2.7398 0.8988 37 1 2.4327 -3.2060 3.2698 38 1 3.9843 1.2347 4.0324 39 1 4.6707 2.8508 4.5606 40 1 5.2308 4.6672 6.6457 41 1 6.7595 4.2799 5.8202 42 1 3.6869 4.6169 2.5447 43 1 1.2608 4.9929 2.3554 44 1 0.0468 6.1345 4.1681 45 1 1.2572 6.8924 6.1740 46 1 3.6818 6.5083 6.3672 47 1 6.2636 3.9228 3.1383 48 1 5.4669 5.3691 2.3818 49 1 5.6588 7.4329 4.1106 50 1 6.5350 6.8501 5.5918 51 1 6.7121 -0.3881 7.8472 52 1 4.7490 -2.5362 7.1438 53 1 3.5042 -2.8993 5.0608 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_13259648.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:27:47 Heat of formation + Delta-G solvation = -48.361026 kcal Electronic energy + Delta-G solvation = -41766.588378 eV Core-core repulsion = 36452.359894 eV Total energy + Delta-G solvation = -5314.228484 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 424.156 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -48.55915 -43.68911 -41.86449 -41.14246 -39.62405 -38.74717 -38.20298 -37.82611 -35.39712 -34.19216 -32.82810 -32.53893 -32.01580 -31.91456 -30.06077 -28.58874 -27.11319 -26.38654 -25.48645 -24.69378 -23.51308 -23.28749 -22.83098 -22.53854 -21.73452 -21.21730 -20.24352 -19.42739 -19.13153 -18.50273 -18.25008 -17.70191 -17.51965 -17.45564 -17.09317 -16.72010 -16.55343 -16.42893 -16.34452 -16.07031 -15.93929 -15.79429 -15.61318 -15.52758 -15.36416 -14.88140 -14.56549 -14.45159 -14.41151 -14.35286 -14.25672 -13.94483 -13.77105 -13.70753 -13.59492 -13.47869 -13.34396 -13.22697 -13.11262 -12.87691 -12.51884 -12.45326 -12.23984 -12.10088 -11.90468 -11.80963 -11.35370 -11.25691 -11.05797 -10.94322 -10.78329 -10.48398 -10.33746 -10.09548 -9.89208 -9.70589 -8.90060 -4.96383 -0.55457 -0.20915 0.34615 0.42286 0.77835 1.16018 1.48247 1.49827 1.72129 1.86772 1.93094 1.96141 2.63347 2.75951 3.11246 3.13331 3.20414 3.23522 3.31615 3.42220 3.47035 3.57594 3.59794 3.67854 3.87490 3.90668 4.02586 4.04775 4.05932 4.07377 4.18741 4.21313 4.22964 4.36141 4.45250 4.45548 4.56029 4.60877 4.64396 4.65096 4.66279 4.69846 4.72037 4.80654 4.86460 4.89464 4.93831 5.02833 5.04266 5.07460 5.14597 5.21019 5.27105 5.28093 5.45147 5.51203 5.51371 5.57122 5.57865 5.99073 6.02707 6.34228 6.36564 6.74145 7.08413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.040 4.040 3 Si 0.760 3.240 4 C -0.053 4.053 5 C -0.182 4.182 6 C -0.190 4.190 7 C 0.024 3.976 8 C -0.041 4.041 9 C -0.052 4.052 10 C -0.179 4.179 11 C 0.559 3.441 12 O -0.556 6.556 13 N -0.712 5.712 14 C 0.149 3.851 15 C -0.045 4.045 16 C -0.069 4.069 17 C -0.123 4.123 18 C -0.129 4.129 19 C -0.133 4.133 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.150 4.150 23 C 0.059 3.941 24 H 0.125 0.875 25 F -0.223 7.223 26 C -0.137 4.137 27 C 0.165 3.835 28 O -0.494 6.494 29 C -0.147 4.147 30 C -0.045 4.045 31 O -0.171 6.171 32 H 0.389 0.611 33 H 0.150 0.850 34 H -0.286 1.286 35 H -0.272 1.272 36 H 0.161 0.839 37 H 0.174 0.826 38 H 0.145 0.855 39 H 0.408 0.592 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.141 0.859 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.099 0.901 48 H 0.106 0.894 49 H 0.096 0.904 50 H 0.097 0.903 51 H 0.411 0.589 52 H 0.164 0.836 53 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.736 -3.340 -2.776 4.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.149 4.149 3 Si 0.663 3.337 4 C -0.103 4.103 5 C -0.201 4.201 6 C -0.209 4.209 7 C -0.026 4.026 8 C -0.041 4.041 9 C -0.070 4.070 10 C -0.183 4.183 11 C 0.347 3.653 12 O -0.435 6.435 13 N -0.365 5.365 14 C 0.026 3.974 15 C -0.045 4.045 16 C -0.069 4.069 17 C -0.141 4.141 18 C -0.147 4.147 19 C -0.151 4.151 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.187 4.187 23 C 0.023 3.977 24 H 0.143 0.857 25 F -0.203 7.203 26 C -0.175 4.175 27 C 0.119 3.881 28 O -0.308 6.308 29 C -0.165 4.165 30 C -0.063 4.063 31 O -0.069 6.069 32 H 0.239 0.761 33 H 0.168 0.832 34 H -0.213 1.213 35 H -0.198 1.198 36 H 0.178 0.822 37 H 0.191 0.809 38 H 0.162 0.838 39 H 0.245 0.755 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.159 0.841 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.146 0.854 47 H 0.118 0.882 48 H 0.125 0.875 49 H 0.115 0.885 50 H 0.115 0.885 51 H 0.272 0.728 52 H 0.181 0.819 53 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.628 -2.207 -2.358 3.290 hybrid contribution -1.177 -0.225 0.040 1.199 sum -0.549 -2.432 -2.318 3.405 Atomic orbital electron populations 1.86644 1.17394 1.80456 1.49980 1.24553 0.83499 1.12761 0.94084 0.93830 0.90350 0.71710 0.77851 1.23019 1.00890 0.94005 0.92345 1.21792 1.03970 0.95957 0.98373 1.22151 1.02231 0.99051 0.97444 1.20419 1.03598 0.87757 0.90787 1.17696 1.00318 0.94444 0.91653 1.21372 0.93956 0.97138 0.94573 1.20247 1.06595 0.94260 0.97154 1.18177 0.79432 0.84591 0.83127 1.90815 1.41999 1.84833 1.25839 1.45729 1.57765 1.08554 1.24436 1.21138 0.99693 0.80219 0.96398 1.20605 0.91101 0.96703 0.96103 1.19495 0.93919 0.98835 0.94683 1.21300 0.94336 1.00439 0.98045 1.21344 0.94988 0.99137 0.99202 1.21413 1.00748 0.98646 0.94257 1.21382 0.94778 0.99991 0.98404 1.21169 0.94563 0.99026 0.99001 1.23801 0.95579 1.02211 0.97135 1.23321 0.94962 0.92078 0.87353 0.85697 1.92794 1.88461 1.76080 1.63009 1.23622 0.95506 0.96404 1.01988 1.18866 0.93532 0.91404 0.84345 1.84707 1.25088 1.92434 1.28579 1.21576 1.00390 0.96522 0.98003 1.21419 0.94251 0.99248 0.91406 1.83905 1.57913 1.38370 1.26694 0.76101 0.83211 1.21265 1.19776 0.82151 0.80890 0.83760 0.75482 0.91467 0.89873 0.84094 0.85678 0.85281 0.85083 0.85370 0.88248 0.87523 0.88525 0.88457 0.72814 0.81867 0.81762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.22 12.88 -148.98 -1.92 -1.70 16 2 C -0.04 0.13 2.98 71.24 0.21 0.34 16 3 Si 0.76 -3.15 32.11 68.60 2.20 -0.95 16 4 C -0.05 0.05 6.20 24.87 0.15 0.21 16 5 C -0.18 0.16 10.78 22.13 0.24 0.40 16 6 C -0.19 0.37 10.26 22.41 0.23 0.60 16 7 C 0.02 -0.01 7.03 24.27 0.17 0.16 16 8 C -0.04 0.06 5.87 -20.13 -0.12 -0.06 16 9 C -0.05 0.05 9.20 22.79 0.21 0.26 16 10 C -0.18 -0.43 5.88 -20.04 -0.12 -0.55 16 11 C 0.56 2.79 7.76 86.70 0.67 3.47 16 12 O -0.56 -6.68 15.14 17.02 0.26 -6.43 16 13 N -0.71 0.64 5.10 -466.26 -2.38 -1.74 16 14 C 0.15 -0.30 4.85 86.38 0.42 0.12 16 15 C -0.04 0.20 0.63 -52.40 -0.03 0.17 16 16 C -0.07 0.11 4.61 -19.87 -0.09 0.02 16 17 C -0.12 0.20 9.05 22.27 0.20 0.40 16 18 C -0.13 -0.05 10.05 22.27 0.22 0.17 16 19 C -0.13 -0.14 10.05 22.27 0.22 0.08 16 20 C -0.13 -0.13 10.05 22.27 0.22 0.09 16 21 C -0.12 -0.03 9.33 22.27 0.21 0.17 16 22 C -0.15 0.87 6.02 31.12 0.19 1.06 16 23 C 0.06 -0.20 5.31 31.12 0.17 -0.03 16 24 H 0.13 -0.78 7.61 -2.39 -0.02 -0.80 16 25 F -0.22 -0.79 17.41 44.97 0.78 -0.01 16 26 C -0.14 0.57 7.00 31.12 0.22 0.78 16 27 C 0.17 0.37 6.72 22.89 0.15 0.52 16 28 O -0.49 -2.14 11.55 -68.65 -0.79 -2.93 16 29 C -0.15 0.41 9.96 22.29 0.22 0.63 16 30 C -0.05 0.19 9.54 22.55 0.22 0.41 16 31 O -0.17 0.03 8.79 -6.50 -0.06 -0.03 16 32 H 0.39 -2.11 8.70 -74.06 -0.64 -2.75 16 33 H 0.15 -0.94 7.96 -2.39 -0.02 -0.96 16 34 H -0.29 -0.63 7.11 99.48 0.71 0.08 16 35 H -0.27 0.11 7.11 99.48 0.71 0.81 16 36 H 0.16 -0.45 8.06 -2.91 -0.02 -0.47 16 37 H 0.17 -1.18 7.25 -2.91 -0.02 -1.20 16 38 H 0.14 -0.60 6.24 -2.91 -0.02 -0.62 16 39 H 0.41 -1.78 6.21 -92.71 -0.58 -2.35 16 40 H 0.07 0.06 7.95 -2.39 -0.02 0.04 16 41 H 0.08 -0.21 7.31 -2.38 -0.02 -0.23 16 42 H 0.14 -0.82 6.41 -2.91 -0.02 -0.84 16 43 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 44 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 45 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 46 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 47 H 0.10 -0.82 7.86 -2.39 -0.02 -0.84 16 48 H 0.11 -0.61 6.79 -2.39 -0.02 -0.63 16 49 H 0.10 -0.22 8.10 -2.38 -0.02 -0.24 16 50 H 0.10 -0.57 8.10 -2.39 -0.02 -0.59 16 51 H 0.41 -1.27 9.06 -74.06 -0.67 -1.94 16 52 H 0.16 -1.11 8.06 -2.91 -0.02 -1.14 16 53 H 0.16 -1.59 6.96 -2.91 -0.02 -1.61 16 Total: 0.00 -22.95 447.19 1.44 -21.51 By element: Atomic # 1 Polarization: -16.31 SS G_CDS: -0.84 Total: -17.15 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 4.19 Total: 9.41 kcal Atomic # 7 Polarization: 0.64 SS G_CDS: -2.38 Total: -1.74 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -2.51 Total: -11.08 kcal Atomic # 9 Polarization: -0.79 SS G_CDS: 0.78 Total: -0.01 kcal Atomic # 14 Polarization: -3.15 SS G_CDS: 2.20 Total: -0.95 kcal Total: -22.95 1.44 -21.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_13259648.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.848 kcal (2) G-P(sol) polarization free energy of solvation -22.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds