Wall clock time and date at job start Sat Mar 6 2021 21:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.46982 * 2 1 4 4 C 1.50693 * 109.47608 * 239.99829 * 2 1 3 5 5 C 1.34190 * 126.54492 * 105.00089 * 4 2 1 6 6 N 1.36869 * 109.96901 * 179.46973 * 5 4 2 7 7 C 1.37401 * 109.97655 * 0.63933 * 6 5 4 8 8 C 1.39332 * 133.24946 * 179.29439 * 7 6 5 9 9 C 1.36340 * 120.23748 * 180.02562 * 8 7 6 10 10 C 1.40168 * 120.66947 * 359.97438 * 9 8 7 11 11 C 1.47659 * 119.97473 * 180.02562 * 10 9 8 12 12 O 1.21575 * 119.99973 * 180.02562 * 11 10 9 13 13 N 1.34772 * 119.99968 * 0.02562 * 11 10 9 14 14 C 1.46500 * 120.00263 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47433 * 175.92566 * 14 13 11 16 16 C 1.50697 * 112.84645 * 65.11661 * 15 14 13 17 17 C 1.38235 * 119.99743 * 245.83651 * 16 15 14 18 18 C 1.38240 * 119.99947 * 179.74493 * 17 16 15 19 19 C 1.38238 * 119.99569 * 0.55807 * 18 17 16 20 20 C 1.38239 * 120.00016 * 359.69717 * 19 18 17 21 21 C 1.38228 * 119.99845 * 0.02562 * 20 19 18 22 22 C 1.53785 * 113.61383 * 293.92002 * 15 14 13 23 23 C 1.53777 * 87.08042 * 270.88408 * 22 15 14 24 24 H 1.08994 * 113.61528 * 89.20407 * 23 22 15 25 25 F 1.39906 * 113.61234 * 220.01822 * 23 22 15 26 26 C 1.53784 * 113.61566 * 196.31308 * 15 14 13 27 27 C 1.39190 * 120.05448 * 0.02562 * 10 9 8 28 28 C 1.39224 * 119.39145 * 0.25728 * 27 10 9 29 29 H 0.96699 * 113.99868 * 60.00650 * 1 2 3 30 30 H 1.09003 * 109.46725 * 119.99179 * 2 1 3 31 31 H 1.48504 * 109.99917 * 59.99845 * 3 2 1 32 32 H 1.48504 * 109.99799 * 181.31577 * 3 2 1 33 33 H 1.08004 * 125.01020 * 359.97438 * 5 4 2 34 34 H 0.96998 * 125.00447 * 179.97438 * 6 5 4 35 35 H 1.08003 * 119.87612 * 359.97438 * 8 7 6 36 36 H 1.08002 * 119.66596 * 179.97438 * 9 8 7 37 37 H 0.96998 * 120.00224 * 0.02562 * 13 11 10 38 38 H 1.08994 * 109.47515 * 295.93230 * 14 13 11 39 39 H 1.09010 * 109.46893 * 55.92873 * 14 13 11 40 40 H 1.08002 * 120.00400 * 0.02562 * 17 16 15 41 41 H 1.07998 * 120.00573 * 180.28051 * 18 17 16 42 42 H 1.08003 * 120.00030 * 179.72629 * 19 18 17 43 43 H 1.08007 * 119.99687 * 180.02562 * 20 19 18 44 44 H 1.08009 * 119.99606 * 179.97438 * 21 20 19 45 45 H 1.09004 * 113.61244 * 25.43508 * 22 15 14 46 46 H 1.08999 * 113.61198 * 156.32970 * 22 15 14 47 47 H 1.08995 * 113.61144 * 203.66501 * 26 15 14 48 48 H 1.08994 * 113.61230 * 334.57220 * 26 15 14 49 49 H 1.08002 * 120.30135 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2303 5 6 2.4609 -0.1387 -2.3229 6 7 2.8139 -1.1013 -3.2296 7 6 2.5007 -2.3459 -2.7388 8 6 2.6343 -3.6351 -3.2502 9 6 2.2248 -4.7099 -2.5181 10 6 1.6657 -4.5364 -1.2445 11 6 1.2279 -5.7114 -0.4647 12 8 0.7425 -5.5614 0.6398 13 7 1.3664 -6.9501 -0.9773 14 6 0.9326 -8.1159 -0.2035 15 6 1.1050 -9.3808 -1.0468 16 6 2.5475 -9.6807 -1.3635 17 6 2.9953 -9.6195 -2.6699 18 6 4.3198 -9.8895 -2.9599 19 6 5.1936 -10.2318 -1.9449 20 6 4.7444 -10.2981 -0.6392 21 6 3.4214 -10.0226 -0.3486 22 6 0.1808 -9.4333 -2.2748 23 6 -0.8562 -10.1155 -1.3671 24 1 -1.5162 -9.4154 -0.8551 25 9 -1.5496 -11.1572 -1.9929 26 6 0.3283 -10.5927 -0.5055 27 6 1.5228 -3.2574 -0.7143 28 6 1.9347 -2.1578 -1.4622 29 1 -0.3933 0.4416 -0.7651 30 1 1.7923 -0.5137 0.8901 31 1 1.5614 2.4679 1.2085 32 1 3.5346 1.7703 -0.0320 33 1 2.5966 0.9236 -2.4623 34 1 3.2161 -0.9295 -4.0953 35 1 3.0630 -3.7834 -4.2303 36 1 2.3323 -5.7052 -2.9236 37 1 1.7540 -7.0698 -1.8584 38 1 1.5359 -8.1969 0.7006 39 1 -0.1167 -8.0012 0.0690 40 1 2.3116 -9.3565 -3.4635 41 1 4.6708 -9.8373 -3.9799 42 1 6.2273 -10.4470 -2.1719 43 1 5.4273 -10.5652 0.1539 44 1 3.0704 -10.0748 0.6715 45 1 -0.1293 -8.4505 -2.6302 46 1 0.5519 -10.0755 -3.0734 47 1 0.7397 -11.5514 -0.8213 48 1 0.1372 -10.5454 0.5665 49 1 1.0922 -3.1191 0.2665 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_13287722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:27:52 Heat of formation + Delta-G solvation = 0.437421 kcal Electronic energy + Delta-G solvation = -34327.180677 eV Core-core repulsion = 29715.232866 eV Total energy + Delta-G solvation = -4611.947811 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.153 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -48.58772 -42.46334 -41.66297 -40.47399 -38.78451 -37.94096 -37.41735 -35.44715 -33.26626 -32.07555 -31.85081 -31.08490 -30.55861 -28.43209 -27.11009 -26.46939 -25.32552 -24.21708 -23.47837 -23.21117 -22.51780 -21.56693 -20.81717 -19.99624 -19.27233 -18.56772 -18.25091 -17.59494 -17.46674 -17.25749 -16.90648 -16.57854 -16.32800 -16.21499 -16.01271 -15.70502 -15.57087 -15.50936 -15.28729 -15.15412 -15.00076 -14.78608 -14.57545 -14.45603 -14.27821 -14.07852 -13.78410 -13.66735 -13.63331 -13.50819 -13.37405 -12.62231 -12.51341 -12.44542 -12.36136 -12.21314 -12.18303 -11.92909 -11.79350 -11.34532 -11.27954 -11.13977 -10.80746 -10.32592 -10.24523 -9.82550 -9.65096 -9.33204 -8.80756 -5.00903 -0.16943 0.19487 0.40447 0.49220 1.35717 1.53064 1.71143 1.82026 1.99527 2.04047 2.13187 2.81836 2.87117 3.12298 3.23358 3.41492 3.51348 3.59541 3.61663 3.65449 3.75282 3.85828 3.86165 3.92553 4.10838 4.12403 4.13260 4.19881 4.29228 4.36592 4.44586 4.46998 4.52240 4.58412 4.62619 4.64028 4.65778 4.69201 4.71189 4.78309 4.85075 4.93835 4.99151 5.09134 5.14654 5.25523 5.26101 5.27629 5.34046 5.48608 5.57732 5.57754 5.63944 5.64294 5.97983 6.09545 6.43306 6.60626 6.88073 7.12036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.054 4.054 3 Si 0.812 3.188 4 C -0.227 4.227 5 C 0.087 3.913 6 N -0.571 5.571 7 C 0.111 3.889 8 C -0.124 4.124 9 C -0.068 4.068 10 C -0.179 4.179 11 C 0.561 3.439 12 O -0.587 6.587 13 N -0.706 5.706 14 C 0.146 3.854 15 C -0.041 4.041 16 C -0.073 4.073 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.132 4.132 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.146 4.146 23 C 0.055 3.945 24 H 0.121 0.879 25 F -0.222 7.222 26 C -0.137 4.137 27 C -0.023 4.023 28 C -0.129 4.129 29 H 0.393 0.607 30 H 0.083 0.917 31 H -0.308 1.308 32 H -0.280 1.280 33 H 0.221 0.779 34 H 0.439 0.561 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.412 0.588 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.096 0.904 46 H 0.109 0.891 47 H 0.099 0.901 48 H 0.094 0.906 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.348 3.598 -10.043 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.162 4.162 3 Si 0.717 3.283 4 C -0.234 4.234 5 C -0.040 4.040 6 N -0.175 5.175 7 C 0.001 3.999 8 C -0.144 4.144 9 C -0.088 4.088 10 C -0.183 4.183 11 C 0.351 3.649 12 O -0.469 6.469 13 N -0.358 5.358 14 C 0.023 3.977 15 C -0.042 4.042 16 C -0.073 4.073 17 C -0.139 4.139 18 C -0.140 4.140 19 C -0.150 4.150 20 C -0.148 4.148 21 C -0.141 4.141 22 C -0.183 4.183 23 C 0.019 3.981 24 H 0.138 0.862 25 F -0.203 7.203 26 C -0.176 4.176 27 C -0.043 4.043 28 C -0.134 4.134 29 H 0.243 0.757 30 H 0.101 0.899 31 H -0.237 1.237 32 H -0.206 1.206 33 H 0.237 0.763 34 H 0.281 0.719 35 H 0.180 0.820 36 H 0.172 0.828 37 H 0.250 0.750 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.114 0.886 46 H 0.127 0.873 47 H 0.117 0.883 48 H 0.113 0.887 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.613 3.962 -8.451 10.411 hybrid contribution 0.281 -1.030 0.284 1.104 sum 4.894 2.932 -8.167 9.963 Atomic orbital electron populations 1.86487 1.18111 1.82422 1.50249 1.24755 0.84629 1.11259 0.95559 0.94049 0.76932 0.72386 0.84956 1.20851 1.11869 0.91471 0.99181 1.22247 0.97835 0.95875 0.88035 1.41784 1.53427 1.03103 1.19167 1.18610 0.99627 0.87949 0.93672 1.20050 1.04232 0.88028 1.02079 1.20821 0.96177 1.00039 0.91780 1.19558 1.09065 0.92207 0.97484 1.18443 0.77447 0.83869 0.85182 1.90770 1.46969 1.86776 1.22338 1.45606 1.63767 1.04651 1.21796 1.21128 1.00635 0.82299 0.93650 1.20553 0.91557 0.94618 0.97428 1.19470 0.93625 1.00307 0.93882 1.21318 0.96276 1.00312 0.96015 1.21442 0.93584 0.98850 1.00136 1.21463 1.00716 0.99724 0.93115 1.21376 0.96004 1.00014 0.97444 1.21124 0.93722 0.99816 0.99431 1.23765 0.94450 1.03142 0.96954 1.23392 0.91918 0.87486 0.95297 0.86185 1.92788 1.82103 1.61220 1.84218 1.23673 0.94190 0.98035 1.01660 1.20583 0.94599 0.90806 0.98308 1.19227 1.05035 0.93655 0.95460 0.75682 0.89947 1.23659 1.20639 0.76279 0.71907 0.82046 0.82764 0.74984 0.91612 0.90623 0.83904 0.84207 0.85027 0.85398 0.85952 0.88592 0.87281 0.88268 0.88747 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.50 12.88 -148.98 -1.92 -4.42 16 2 C -0.05 -0.14 3.06 71.23 0.22 0.08 16 3 Si 0.81 -2.68 30.76 68.60 2.11 -0.57 16 4 C -0.23 -0.36 5.58 -18.61 -0.10 -0.46 16 5 C 0.09 -0.55 10.43 82.98 0.87 0.31 16 6 N -0.57 3.83 6.05 -187.47 -1.13 2.70 16 7 C 0.11 0.00 7.27 39.19 0.28 0.28 16 8 C -0.12 0.37 10.00 22.09 0.22 0.60 16 9 C -0.07 0.07 9.46 22.30 0.21 0.28 16 10 C -0.18 -1.22 5.87 -20.09 -0.12 -1.34 16 11 C 0.56 5.17 7.76 86.73 0.67 5.85 16 12 O -0.59 -10.74 16.33 -3.95 -0.06 -10.80 16 13 N -0.71 -0.87 5.14 -466.15 -2.40 -3.27 16 14 C 0.15 0.08 4.84 86.38 0.42 0.50 16 15 C -0.04 0.13 0.63 -52.40 -0.03 0.10 16 16 C -0.07 0.13 4.51 -19.87 -0.09 0.04 16 17 C -0.12 0.42 9.05 22.27 0.20 0.62 16 18 C -0.12 0.33 10.05 22.27 0.22 0.55 16 19 C -0.13 0.11 10.05 22.27 0.22 0.34 16 20 C -0.13 -0.06 10.05 22.27 0.22 0.17 16 21 C -0.12 -0.05 9.34 22.27 0.21 0.16 16 22 C -0.15 0.65 6.10 31.12 0.19 0.84 16 23 C 0.05 -0.07 5.32 31.21 0.17 0.10 16 24 H 0.12 -0.38 7.61 -2.39 -0.02 -0.40 16 25 F -0.22 -1.17 17.41 44.97 0.78 -0.38 16 26 C -0.14 0.34 7.01 31.21 0.22 0.56 16 27 C -0.02 -0.25 9.64 22.74 0.22 -0.03 16 28 C -0.13 -0.80 6.34 -20.21 -0.13 -0.93 16 29 H 0.39 -2.06 8.70 -74.06 -0.64 -2.70 16 30 H 0.08 0.60 7.96 -2.39 -0.02 0.58 16 31 H -0.31 -1.74 7.11 99.48 0.71 -1.03 16 32 H -0.28 -0.16 7.11 99.48 0.71 0.54 16 33 H 0.22 -3.41 6.35 -2.91 -0.02 -3.43 16 34 H 0.44 -6.12 8.96 -92.71 -0.83 -6.95 16 35 H 0.16 -1.62 8.06 -2.91 -0.02 -1.64 16 36 H 0.15 -1.17 6.36 -2.91 -0.02 -1.19 16 37 H 0.41 -1.65 6.23 -92.71 -0.58 -2.23 16 38 H 0.07 0.20 7.97 -2.39 -0.02 0.19 16 39 H 0.08 0.11 7.31 -2.38 -0.02 0.10 16 40 H 0.14 -1.11 6.41 -2.91 -0.02 -1.13 16 41 H 0.14 -0.92 8.06 -2.91 -0.02 -0.94 16 42 H 0.13 -0.48 8.06 -2.91 -0.02 -0.50 16 43 H 0.13 -0.21 8.06 -2.91 -0.02 -0.24 16 44 H 0.12 -0.08 8.06 -2.91 -0.02 -0.10 16 45 H 0.10 -0.59 7.95 -2.38 -0.02 -0.61 16 46 H 0.11 -0.55 6.79 -2.39 -0.02 -0.57 16 47 H 0.10 -0.13 8.09 -2.39 -0.02 -0.15 16 48 H 0.09 -0.35 8.10 -2.39 -0.02 -0.37 16 49 H 0.11 1.64 7.64 -2.91 -0.02 1.62 16 Total: 0.00 -29.97 407.89 0.69 -29.28 By element: Atomic # 1 Polarization: -20.17 SS G_CDS: -0.98 Total: -21.15 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 4.29 Total: 8.62 kcal Atomic # 7 Polarization: 2.96 SS G_CDS: -3.53 Total: -0.57 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -1.98 Total: -15.22 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.78 Total: -0.38 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: 2.11 Total: -0.57 kcal Total: -29.97 0.69 -29.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_13287722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.717 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds