Wall clock time and date at job start Sat Mar 6 2021 21:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38979 * 119.95540 * 2 1 4 4 O 1.35712 * 119.91275 * 359.97438 * 3 2 1 5 5 C 1.39017 * 120.17814 * 179.97438 * 3 2 1 6 6 C 1.50696 * 119.95763 * 180.02562 * 5 3 2 7 7 O 1.42893 * 109.47461 * 74.99452 * 6 5 3 8 8 Si 1.86303 * 109.47181 * 195.00096 * 6 5 3 9 9 C 1.37682 * 120.08593 * 359.73756 * 5 3 2 10 10 C 1.39759 * 119.91101 * 0.53543 * 9 5 3 11 11 C 1.47597 * 120.08539 * 179.74139 * 10 9 5 12 12 O 1.21581 * 120.00356 * 359.72337 * 11 10 9 13 13 N 1.34780 * 119.99813 * 179.72612 * 11 10 9 14 14 C 1.46503 * 120.00141 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47105 * 180.73029 * 14 13 11 16 16 C 1.50690 * 112.84612 * 293.97903 * 15 14 13 17 17 C 1.38240 * 120.00046 * 124.45652 * 16 15 14 18 18 C 1.38228 * 120.00207 * 179.74090 * 17 16 15 19 19 C 1.38236 * 120.00239 * 0.55196 * 18 17 16 20 20 C 1.38238 * 119.99504 * 359.69995 * 19 18 17 21 21 C 1.38230 * 120.00237 * 0.02623 * 20 19 18 22 22 C 1.54055 * 113.60779 * 162.66930 * 15 14 13 23 23 C 1.53781 * 86.98408 * 270.88350 * 22 15 14 24 24 H 1.08997 * 113.61655 * 89.17028 * 23 22 15 25 25 F 1.39910 * 113.61179 * 219.98515 * 23 22 15 26 26 C 1.53782 * 87.17631 * 334.57262 * 23 22 15 27 27 C 1.37719 * 119.95684 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47005 * 269.97903 * 1 2 3 29 29 H 1.08997 * 109.47078 * 29.98037 * 1 2 3 30 30 H 1.08995 * 109.46795 * 149.98297 * 1 2 3 31 31 H 0.96696 * 114.00024 * 89.99602 * 4 3 2 32 32 H 1.09006 * 109.46904 * 314.99629 * 6 5 3 33 33 H 0.96707 * 114.00078 * 60.00481 * 7 6 5 34 34 H 1.48496 * 109.99980 * 179.97438 * 8 6 5 35 35 H 1.48497 * 109.99566 * 301.31332 * 8 6 5 36 36 H 1.07997 * 120.04384 * 180.25053 * 9 5 3 37 37 H 0.96997 * 120.00184 * 0.02562 * 13 11 10 38 38 H 1.09000 * 109.47632 * 60.72407 * 14 13 11 39 39 H 1.09008 * 109.46586 * 300.72847 * 14 13 11 40 40 H 1.08007 * 119.99702 * 0.02562 * 17 16 15 41 41 H 1.08000 * 120.00113 * 180.27614 * 18 17 16 42 42 H 1.07997 * 120.00127 * 179.72058 * 19 18 17 43 43 H 1.07998 * 119.99489 * 179.97438 * 20 19 18 44 44 H 1.08000 * 120.00150 * 179.97438 * 21 20 19 45 45 H 1.09007 * 113.60882 * 156.38036 * 22 15 14 46 46 H 1.08993 * 113.69784 * 25.39997 * 22 15 14 47 47 H 1.08998 * 113.61251 * 140.02167 * 26 23 22 48 48 H 1.08999 * 113.61552 * 270.84903 * 26 23 22 49 49 H 1.07994 * 120.04714 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2041 0.0000 4 8 1.5197 2.3779 -0.0005 5 6 3.5911 1.2095 0.0005 6 6 4.3386 2.5181 0.0011 7 8 4.2715 3.1044 1.3025 8 14 6.1200 2.2159 -0.4529 9 6 4.2860 0.0209 0.0065 10 6 3.5919 -1.1921 0.0008 11 6 4.3329 -2.4686 0.0014 12 8 5.5487 -2.4658 0.0018 13 7 3.6617 -3.6374 0.0014 14 6 4.3971 -4.9044 0.0026 15 6 3.4057 -6.0696 -0.0161 16 6 2.5818 -6.1570 1.2426 17 6 1.2015 -6.1533 1.1668 18 6 0.4456 -6.2388 2.3210 19 6 1.0699 -6.3165 3.5519 20 6 2.4502 -6.3149 3.6281 21 6 3.2061 -6.2351 2.4735 22 6 4.0371 -7.4103 -0.4371 23 6 3.6939 -7.0241 -1.8855 24 1 4.4790 -6.4550 -2.3834 25 9 3.2277 -8.0951 -2.6556 26 6 2.5712 -6.1478 -1.3054 27 6 2.1947 -1.1932 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.3219 2.7182 0.8827 32 1 3.8881 3.1941 -0.7257 33 1 4.6550 2.5566 2.0010 34 1 6.8678 3.4988 -0.4565 35 1 6.7367 1.2707 0.5122 36 1 5.3659 0.0259 0.0110 37 1 2.6917 -3.6397 0.0006 38 1 5.0135 -4.9661 0.8995 39 1 5.0344 -4.9554 -0.8804 40 1 0.7136 -6.0883 0.2054 41 1 -0.6327 -6.2404 2.2615 42 1 0.4794 -6.3787 4.4540 43 1 2.9380 -6.3751 4.5898 44 1 4.2844 -6.2334 2.5330 45 1 3.4912 -8.2822 -0.0766 46 1 5.1080 -7.4702 -0.2432 47 1 2.4595 -5.1892 -1.8121 48 1 1.6249 -6.6748 -1.1832 49 1 1.6548 -2.1285 -0.0005 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_13287732.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:28:02 Heat of formation + Delta-G solvation = -75.159943 kcal Electronic energy + Delta-G solvation = -34154.005801 eV Core-core repulsion = 29541.975842 eV Total energy + Delta-G solvation = -4612.029959 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.157 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -48.56385 -41.91487 -41.33162 -40.19565 -38.75855 -37.97783 -37.50920 -35.50897 -33.99897 -32.25775 -31.84965 -31.79888 -28.63539 -27.98715 -27.11429 -26.82249 -25.30839 -24.24349 -23.22688 -22.47676 -22.07582 -21.49386 -20.01696 -19.58204 -18.76604 -18.37821 -18.13487 -17.56878 -17.26377 -16.72502 -16.60729 -16.52022 -16.27797 -16.09786 -15.98963 -15.81806 -15.60973 -15.50773 -15.16333 -14.76733 -14.64390 -14.51163 -14.30413 -14.29513 -14.08435 -13.88007 -13.66261 -13.51671 -13.37013 -13.30382 -12.91829 -12.76468 -12.50917 -12.48099 -12.44916 -12.16996 -11.91807 -11.73300 -11.64766 -11.33599 -11.26709 -11.15433 -10.64656 -10.27780 -9.98711 -9.82838 -9.65263 -9.64204 -5.01201 -0.40787 0.06239 0.40220 0.49240 1.20372 1.50947 1.59132 1.83834 1.94715 2.54265 2.81424 3.13525 3.15289 3.24822 3.32843 3.42023 3.45621 3.52186 3.61280 3.63733 3.71261 3.87870 4.00340 4.10333 4.12671 4.17028 4.20950 4.28006 4.38133 4.47467 4.48767 4.60261 4.63871 4.65089 4.65882 4.70650 4.73406 4.74330 4.81255 4.87140 4.96178 5.04172 5.06931 5.10022 5.14588 5.20116 5.26567 5.28788 5.32627 5.58106 5.58807 5.64352 5.64755 6.09429 6.37645 6.39305 6.70324 7.05945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.118 4.118 3 C 0.158 3.842 4 O -0.496 6.496 5 C -0.151 4.151 6 C -0.062 4.062 7 O -0.539 6.539 8 Si 0.744 3.256 9 C -0.065 4.065 10 C -0.150 4.150 11 C 0.561 3.439 12 O -0.575 6.575 13 N -0.706 5.706 14 C 0.145 3.855 15 C -0.042 4.042 16 C -0.071 4.071 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.132 4.132 20 C -0.130 4.130 21 C -0.122 4.122 22 C -0.138 4.138 23 C 0.056 3.944 24 H 0.123 0.877 25 F -0.224 7.224 26 C -0.149 4.149 27 C -0.054 4.054 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.411 0.589 32 H 0.127 0.873 33 H 0.385 0.615 34 H -0.291 1.291 35 H -0.288 1.288 36 H 0.133 0.867 37 H 0.412 0.588 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.109 0.891 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 -1.805 0.734 6.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.119 4.119 3 C 0.112 3.888 4 O -0.309 6.309 5 C -0.152 4.152 6 C -0.172 4.172 7 O -0.347 6.347 8 Si 0.650 3.350 9 C -0.084 4.084 10 C -0.153 4.153 11 C 0.349 3.651 12 O -0.456 6.456 13 N -0.358 5.358 14 C 0.022 3.978 15 C -0.042 4.042 16 C -0.071 4.071 17 C -0.140 4.140 18 C -0.141 4.141 19 C -0.150 4.150 20 C -0.148 4.148 21 C -0.140 4.140 22 C -0.176 4.176 23 C 0.020 3.980 24 H 0.141 0.859 25 F -0.204 7.204 26 C -0.186 4.186 27 C -0.073 4.073 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.272 0.728 32 H 0.144 0.856 33 H 0.234 0.766 34 H -0.218 1.218 35 H -0.215 1.215 36 H 0.150 0.850 37 H 0.250 0.750 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.161 0.839 41 H 0.156 0.844 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.117 0.883 48 H 0.127 0.873 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.427 -1.377 0.033 4.636 hybrid contribution -0.270 -0.104 1.896 1.918 sum -4.696 -1.481 1.929 5.288 Atomic orbital electron populations 1.20771 0.88284 1.04273 1.03552 1.20431 0.98311 0.91680 1.01479 1.18439 0.88677 0.85895 0.95802 1.84626 1.75464 1.35632 1.35219 1.20490 0.94137 0.95375 1.05198 1.24842 1.10049 0.93970 0.88316 1.86578 1.82941 1.48364 1.16836 0.93937 0.73289 0.77633 0.90119 1.21115 1.00439 0.90916 0.95880 1.19778 0.94267 0.92628 1.08603 1.18301 0.86724 0.84362 0.75699 1.90798 1.15054 1.88089 1.51658 1.45655 1.11039 1.04693 1.74390 1.21178 0.93100 0.80466 1.03094 1.20612 0.95824 0.95132 0.92661 1.19452 0.93715 1.00764 0.93218 1.21353 0.92952 1.00169 0.99500 1.21432 1.00953 0.99352 0.92394 1.21448 0.94894 0.99898 0.98743 1.21366 0.94558 1.00047 0.98865 1.21118 1.00259 1.00267 0.92320 1.23677 1.03262 0.96644 0.94034 1.23360 0.98650 0.85966 0.90036 0.85900 1.92792 1.90267 1.59204 1.78177 1.23806 0.98571 1.01899 0.94318 1.21320 0.91717 0.98895 0.95366 0.89912 0.90965 0.89585 0.72822 0.85569 0.76559 1.21844 1.21513 0.84953 0.74997 0.91194 0.90140 0.83919 0.84440 0.85152 0.85491 0.85972 0.88519 0.88663 0.88340 0.87292 0.82496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.76 9.79 71.24 0.70 1.46 16 2 C -0.12 0.35 5.89 -19.81 -0.12 0.23 16 3 C 0.16 -0.03 6.66 22.63 0.15 0.12 16 4 O -0.50 0.59 11.84 -90.33 -1.07 -0.48 16 5 C -0.15 -0.17 5.27 -19.81 -0.10 -0.27 16 6 C -0.06 -0.06 2.37 71.23 0.17 0.11 16 7 O -0.54 -0.97 12.88 -148.98 -1.92 -2.89 16 8 Si 0.74 1.47 30.25 68.60 2.08 3.54 16 9 C -0.06 -0.19 8.20 22.51 0.18 -0.01 16 10 C -0.15 -0.19 5.87 -20.08 -0.12 -0.31 16 11 C 0.56 2.05 7.76 86.71 0.67 2.73 16 12 O -0.58 -6.81 16.34 -3.97 -0.06 -6.87 16 13 N -0.71 2.11 5.11 -466.19 -2.38 -0.27 16 14 C 0.14 -0.48 4.77 86.38 0.41 -0.07 16 15 C -0.04 0.25 0.67 -52.31 -0.04 0.21 16 16 C -0.07 0.27 4.69 -19.87 -0.09 0.18 16 17 C -0.12 0.59 9.14 22.27 0.20 0.79 16 18 C -0.12 0.45 10.05 22.27 0.22 0.68 16 19 C -0.13 0.26 10.05 22.27 0.22 0.49 16 20 C -0.13 0.13 10.05 22.27 0.22 0.35 16 21 C -0.12 0.18 9.28 22.27 0.21 0.38 16 22 C -0.14 0.65 7.13 31.21 0.22 0.87 16 23 C 0.06 -0.21 5.31 31.12 0.17 -0.04 16 24 H 0.12 -0.77 7.61 -2.39 -0.02 -0.78 16 25 F -0.22 -0.74 17.41 44.97 0.78 0.05 16 26 C -0.15 1.05 6.24 31.12 0.19 1.24 16 27 C -0.05 0.21 9.18 22.50 0.21 0.41 16 28 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 29 H 0.07 -0.36 7.52 -2.39 -0.02 -0.37 16 30 H 0.09 -0.82 8.08 -2.39 -0.02 -0.83 16 31 H 0.41 -3.11 9.06 -74.06 -0.67 -3.78 16 32 H 0.13 0.07 7.82 -2.38 -0.02 0.05 16 33 H 0.39 -1.25 8.70 -74.05 -0.64 -1.90 16 34 H -0.29 -2.39 7.11 99.48 0.71 -1.68 16 35 H -0.29 -2.10 6.68 99.48 0.66 -1.44 16 36 H 0.13 0.68 4.44 -2.91 -0.01 0.67 16 37 H 0.41 -3.16 6.24 -92.71 -0.58 -3.73 16 38 H 0.07 -0.06 7.27 -2.39 -0.02 -0.08 16 39 H 0.08 -0.25 7.31 -2.38 -0.02 -0.26 16 40 H 0.14 -1.25 5.96 -2.91 -0.02 -1.27 16 41 H 0.14 -0.97 8.06 -2.91 -0.02 -0.99 16 42 H 0.13 -0.59 8.06 -2.91 -0.02 -0.61 16 43 H 0.13 -0.37 8.06 -2.91 -0.02 -0.39 16 44 H 0.12 -0.29 7.46 -2.91 -0.02 -0.31 16 45 H 0.10 -0.29 8.10 -2.38 -0.02 -0.31 16 46 H 0.09 -0.58 8.10 -2.39 -0.02 -0.60 16 47 H 0.10 -0.91 7.90 -2.39 -0.02 -0.93 16 48 H 0.11 -0.80 6.24 -2.39 -0.01 -0.82 16 49 H 0.16 -1.56 6.39 -2.91 -0.02 -1.58 16 Total: 0.00 -20.29 402.49 0.25 -20.04 By element: Atomic # 1 Polarization: -21.80 SS G_CDS: -0.86 Total: -22.67 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 3.69 Total: 9.55 kcal Atomic # 7 Polarization: 2.11 SS G_CDS: -2.38 Total: -0.27 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -3.05 Total: -10.25 kcal Atomic # 9 Polarization: -0.74 SS G_CDS: 0.78 Total: 0.05 kcal Atomic # 14 Polarization: 1.47 SS G_CDS: 2.08 Total: 3.54 kcal Total: -20.29 0.25 -20.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_13287732.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.116 kcal (2) G-P(sol) polarization free energy of solvation -20.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds