Wall clock time and date at job start Sat Mar 6 2021 21:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36419 * 125.80519 * 2 1 4 4 C 1.47387 * 127.18600 * 359.97090 * 3 2 1 5 5 O 1.21608 * 119.99890 * 359.71560 * 4 3 2 6 6 N 1.34782 * 119.99777 * 179.97438 * 4 3 2 7 7 C 1.46491 * 119.99764 * 179.72519 * 6 4 3 8 8 C 1.53005 * 109.47120 * 175.11144 * 7 6 4 9 9 C 1.50702 * 112.84957 * 294.01122 * 8 7 6 10 10 C 1.38235 * 120.00279 * 113.50817 * 9 8 7 11 11 C 1.38231 * 119.99766 * 179.81225 * 10 9 8 12 12 C 1.38238 * 120.00312 * 0.41847 * 11 10 9 13 13 C 1.38234 * 119.99906 * 359.81486 * 12 11 10 14 14 C 1.38238 * 119.99628 * 293.78237 * 9 8 7 15 15 C 1.53779 * 113.61686 * 162.70372 * 8 7 6 16 16 C 1.53784 * 87.07904 * 270.88394 * 15 8 7 17 17 H 1.08994 * 113.61913 * 89.11406 * 16 15 8 18 18 F 1.39901 * 113.69226 * 220.01152 * 16 15 8 19 19 C 1.53775 * 113.61496 * 65.20202 * 8 7 6 20 20 C 1.47012 * 105.62081 * 179.71428 * 3 2 1 21 21 C 1.34180 * 105.95538 * 0.25747 * 20 3 2 22 22 C 1.50693 * 125.44243 * 180.02562 * 21 20 3 23 23 O 1.42905 * 109.46899 * 300.00424 * 22 21 20 24 24 Si 1.86302 * 109.47610 * 180.02562 * 22 21 20 25 25 O 1.33652 * 125.80316 * 180.15667 * 2 1 3 26 26 H 1.08997 * 109.46985 * 89.99927 * 1 2 3 27 27 H 1.08999 * 109.47104 * 210.00080 * 1 2 3 28 28 H 1.09000 * 109.47115 * 330.00399 * 1 2 3 29 29 H 0.97000 * 119.99872 * 359.73109 * 6 4 3 30 30 H 1.08995 * 109.47608 * 295.10943 * 7 6 4 31 31 H 1.09000 * 109.47457 * 55.11187 * 7 6 4 32 32 H 1.07995 * 119.99861 * 0.02562 * 10 9 8 33 33 H 1.08002 * 119.99850 * 180.21355 * 11 10 9 34 34 H 1.08004 * 119.99964 * 179.79234 * 12 11 10 35 35 H 1.08004 * 120.00022 * 179.97438 * 13 12 11 36 36 H 1.08003 * 120.00321 * 359.97438 * 14 9 8 37 37 H 1.08991 * 113.61365 * 25.43172 * 15 8 7 38 38 H 1.09001 * 113.61438 * 156.33666 * 15 8 7 39 39 H 1.09001 * 113.62021 * 203.67229 * 19 8 7 40 40 H 1.09004 * 113.61697 * 334.49038 * 19 8 7 41 41 H 1.08004 * 127.02364 * 180.24451 * 20 3 2 42 42 H 1.08996 * 109.47387 * 59.99947 * 22 21 20 43 43 H 0.96697 * 113.99761 * 299.99594 * 23 22 21 44 44 H 1.48498 * 110.00010 * 179.97438 * 24 22 21 45 45 H 1.48496 * 109.99966 * 301.32030 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3051 1.1064 0.0000 4 6 1.8739 2.5158 -0.0006 5 8 0.6890 2.7891 -0.0064 6 7 2.7930 3.5016 0.0000 7 6 2.3645 4.9024 -0.0067 8 6 3.5892 5.8110 0.1185 9 6 4.2840 5.6767 1.4490 10 6 5.5579 5.1438 1.5129 11 6 6.1966 5.0243 2.7330 12 6 5.5581 5.4296 3.8901 13 6 4.2824 5.9580 3.8268 14 6 3.6451 6.0812 2.6062 15 6 3.3202 7.2679 -0.2938 16 6 3.7081 6.8524 -1.7228 17 1 2.8682 6.4898 -2.3153 18 9 4.4764 7.8076 -2.3969 19 6 4.5426 5.7290 -1.0852 20 6 3.6849 0.5991 0.0071 21 6 3.5860 -0.7390 0.0048 22 6 4.7459 -1.7010 0.0106 23 8 5.5496 -1.4850 -1.1511 24 14 4.1027 -3.4495 0.0037 25 8 2.2888 -1.0840 -0.0030 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 3.7382 3.2835 0.0048 30 1 1.8453 5.1192 -0.9402 31 1 1.6925 5.0809 0.8328 32 1 6.0554 4.8241 0.6093 33 1 7.1933 4.6111 2.7825 34 1 6.0559 5.3330 4.8438 35 1 3.7833 6.2743 4.7309 36 1 2.6482 6.4939 2.5568 37 1 2.2762 7.5643 -0.1935 38 1 4.0094 7.9831 0.1552 39 1 5.5660 6.0234 -0.8526 40 1 4.4865 4.7826 -1.6231 41 1 4.5928 1.1841 0.0127 42 1 5.3482 -1.5386 0.9043 43 1 5.0774 -1.6124 -1.9853 44 1 5.2370 -4.4079 0.0087 45 1 3.2391 -3.6777 1.1899 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_13308374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:28:13 Heat of formation + Delta-G solvation = -44.004848 kcal Electronic energy + Delta-G solvation = -30538.458240 eV Core-core repulsion = 26211.543027 eV Total energy + Delta-G solvation = -4326.915213 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.58483 -43.77582 -41.62460 -40.20593 -38.77523 -38.00487 -35.41933 -34.12457 -33.09670 -32.05758 -31.87751 -29.68339 -28.53511 -27.13634 -25.83885 -25.05378 -23.93071 -23.24561 -22.54655 -22.05844 -21.00965 -19.73873 -18.89766 -18.39258 -17.92600 -17.69679 -17.50654 -16.92106 -16.77039 -16.55582 -16.18622 -16.08597 -15.82751 -15.70251 -15.53225 -15.45018 -14.93929 -14.57247 -14.41701 -14.31430 -14.24512 -14.18065 -13.95907 -13.81232 -13.66433 -13.52761 -13.37835 -12.88080 -12.77367 -12.51905 -12.43358 -12.25539 -12.21647 -11.80840 -11.36031 -11.27346 -11.16958 -10.94988 -10.62355 -10.18663 -9.85476 -9.67208 -9.57748 -5.01151 0.22373 0.38302 0.46245 0.81976 1.17308 1.39465 1.75656 1.90787 2.06640 2.23977 2.79503 3.12712 3.20504 3.24622 3.41950 3.46824 3.53367 3.59970 3.75081 3.77741 3.86744 4.08693 4.09819 4.10910 4.19507 4.26226 4.30992 4.44323 4.47418 4.57392 4.60714 4.62672 4.63974 4.65346 4.68806 4.70861 4.79518 4.85975 4.94192 5.07242 5.11274 5.12158 5.20861 5.26209 5.33370 5.54842 5.61029 5.61297 5.88629 6.06787 6.42615 6.62196 7.11458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.086 3.914 3 C -0.269 4.269 4 C 0.590 3.410 5 O -0.572 6.572 6 N -0.707 5.707 7 C 0.149 3.851 8 C -0.042 4.042 9 C -0.070 4.070 10 C -0.123 4.123 11 C -0.126 4.126 12 C -0.134 4.134 13 C -0.130 4.130 14 C -0.122 4.122 15 C -0.137 4.137 16 C 0.057 3.943 17 H 0.126 0.874 18 F -0.223 7.223 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.059 4.059 22 C -0.023 4.023 23 O -0.538 6.538 24 Si 0.775 3.225 25 O -0.172 6.172 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.410 0.590 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.173 0.827 42 H 0.138 0.862 43 H 0.400 0.600 44 H -0.279 1.279 45 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.957 -1.878 -1.261 2.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.032 3.968 3 C -0.273 4.273 4 C 0.379 3.621 5 O -0.453 6.453 6 N -0.358 5.358 7 C 0.026 3.974 8 C -0.043 4.043 9 C -0.070 4.070 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.152 4.152 13 C -0.148 4.148 14 C -0.140 4.140 15 C -0.175 4.175 16 C 0.022 3.978 17 H 0.143 0.857 18 F -0.204 7.204 19 C -0.186 4.186 20 C -0.167 4.167 21 C -0.107 4.107 22 C -0.134 4.134 23 O -0.347 6.347 24 Si 0.680 3.320 25 O -0.069 6.069 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.246 0.754 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.191 0.809 42 H 0.155 0.845 43 H 0.251 0.749 44 H -0.205 1.205 45 H -0.223 1.223 Dipole moment (debyes) X Y Z Total from point charges 0.493 -2.570 -0.437 2.653 hybrid contribution 0.731 0.821 0.649 1.277 sum 1.224 -1.750 0.213 2.146 Atomic orbital electron populations 1.20711 0.82523 1.05364 1.05456 1.23232 0.94786 0.82960 0.95774 1.21198 0.94161 0.93529 1.18441 1.17296 0.85112 0.84313 0.75360 1.90762 1.17753 1.84513 1.52295 1.45553 1.10056 1.05487 1.74744 1.21139 0.94543 0.78867 1.02901 1.20585 0.95215 0.96327 0.92153 1.19493 0.94673 0.99336 0.93537 1.21288 0.94557 0.99601 0.98602 1.21424 1.00667 0.99689 0.92601 1.21448 0.95447 0.98947 0.99324 1.21390 0.95613 0.99517 0.98280 1.21150 1.00334 1.00240 0.92306 1.23620 1.04509 0.95121 0.94282 1.23345 0.94513 0.87814 0.92158 0.85664 1.92789 1.77825 1.66981 1.82823 1.23767 0.99644 1.00009 0.95166 1.22744 0.96353 0.93671 1.03954 1.22899 0.82893 0.95975 1.08959 1.24430 0.89244 1.06943 0.92737 1.86534 1.38594 1.93333 1.16195 0.93289 0.78916 0.72481 0.87333 1.83676 1.16739 1.34991 1.71458 0.87821 0.88543 0.88610 0.75382 0.90127 0.91216 0.84299 0.84642 0.85128 0.85217 0.85564 0.88377 0.88575 0.87807 0.88569 0.80927 0.84525 0.74934 1.20528 1.22267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.02 9.88 71.23 0.70 0.72 16 2 C 0.09 0.26 7.37 25.26 0.19 0.45 16 3 C -0.27 -0.96 6.31 -18.99 -0.12 -1.08 16 4 C 0.59 3.08 7.81 86.65 0.68 3.76 16 5 O -0.57 -6.31 14.84 -4.06 -0.06 -6.37 16 6 N -0.71 0.42 5.17 -466.42 -2.41 -1.99 16 7 C 0.15 -0.28 4.85 86.38 0.42 0.14 16 8 C -0.04 0.18 0.63 -52.40 -0.03 0.14 16 9 C -0.07 0.11 4.67 -19.86 -0.09 0.01 16 10 C -0.12 0.25 9.05 22.27 0.20 0.45 16 11 C -0.13 0.11 10.05 22.27 0.22 0.33 16 12 C -0.13 -0.05 10.05 22.27 0.22 0.18 16 13 C -0.13 -0.11 10.05 22.27 0.22 0.11 16 14 C -0.12 -0.04 9.33 22.27 0.21 0.17 16 15 C -0.14 0.52 7.00 31.12 0.22 0.73 16 16 C 0.06 -0.16 5.31 31.12 0.17 0.01 16 17 H 0.13 -0.72 7.61 -2.39 -0.02 -0.73 16 18 F -0.22 -0.96 17.41 44.97 0.78 -0.18 16 19 C -0.15 0.75 5.97 31.12 0.19 0.94 16 20 C -0.15 0.01 10.46 23.65 0.25 0.26 16 21 C -0.06 0.02 6.20 24.76 0.15 0.17 16 22 C -0.02 0.08 2.98 71.23 0.21 0.29 16 23 O -0.54 2.16 12.86 -148.98 -1.92 0.24 16 24 Si 0.78 -2.19 32.08 68.60 2.20 0.01 16 25 O -0.17 -0.31 8.89 4.40 0.04 -0.27 16 26 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.10 0.31 6.49 -2.39 -0.02 0.29 16 29 H 0.41 -1.64 7.25 -92.71 -0.67 -2.31 16 30 H 0.08 -0.20 7.31 -2.39 -0.02 -0.22 16 31 H 0.07 0.06 7.95 -2.39 -0.02 0.04 16 32 H 0.14 -0.81 6.44 -2.91 -0.02 -0.83 16 33 H 0.14 -0.56 8.06 -2.91 -0.02 -0.58 16 34 H 0.13 -0.31 8.06 -2.91 -0.02 -0.33 16 35 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 36 H 0.13 -0.18 8.06 -2.91 -0.02 -0.21 16 37 H 0.10 -0.56 8.10 -2.39 -0.02 -0.58 16 38 H 0.10 -0.18 8.10 -2.39 -0.02 -0.20 16 39 H 0.10 -0.48 6.83 -2.39 -0.02 -0.49 16 40 H 0.10 -0.68 7.75 -2.39 -0.02 -0.70 16 41 H 0.17 -0.73 7.74 -2.91 -0.02 -0.76 16 42 H 0.14 -0.56 7.96 -2.39 -0.02 -0.58 16 43 H 0.40 -4.56 8.70 -74.06 -0.64 -5.21 16 44 H -0.28 -0.71 7.11 99.48 0.71 -0.01 16 45 H -0.30 -1.29 7.11 99.48 0.71 -0.59 16 Total: 0.00 -18.05 380.20 2.40 -15.65 By element: Atomic # 1 Polarization: -14.63 SS G_CDS: -0.24 Total: -14.87 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 4.00 Total: 7.78 kcal Atomic # 7 Polarization: 0.42 SS G_CDS: -2.41 Total: -1.99 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -1.94 Total: -6.40 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.78 Total: -0.18 kcal Atomic # 14 Polarization: -2.19 SS G_CDS: 2.20 Total: 0.01 kcal Total: -18.05 2.40 -15.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_13308374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.355 kcal (2) G-P(sol) polarization free energy of solvation -18.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds