Wall clock time and date at job start Sat Mar 6 2021 21:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.46966 * 2 1 4 4 C 1.50700 * 109.47122 * 240.00223 * 2 1 3 5 5 C 1.33737 * 125.12078 * 299.99745 * 4 2 1 6 6 C 1.37806 * 115.08223 * 180.02562 * 5 4 2 7 7 C 1.34973 * 114.69894 * 0.02562 * 6 5 4 8 8 C 1.47564 * 125.27377 * 180.02562 * 7 6 5 9 9 C 1.39827 * 119.99904 * 180.02562 * 8 7 6 10 10 C 1.36560 * 119.99984 * 179.97438 * 9 8 7 11 11 C 1.39828 * 119.99876 * 359.97438 * 10 9 8 12 12 C 1.47564 * 119.99956 * 179.97438 * 11 10 9 13 13 O 1.21594 * 119.99825 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99924 * 180.02562 * 12 11 10 15 15 C 1.46495 * 119.99908 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47270 * 182.99019 * 15 14 12 17 17 C 1.50704 * 112.85025 * 305.63297 * 16 15 14 18 18 C 1.38232 * 119.99926 * 102.33124 * 17 16 15 19 19 C 1.38234 * 120.00295 * 179.76775 * 18 17 16 20 20 C 1.38235 * 119.99548 * 0.48854 * 19 18 17 21 21 C 1.38241 * 120.00246 * 359.78926 * 20 19 18 22 22 C 1.38232 * 120.00072 * 282.61191 * 17 16 15 23 23 C 1.53782 * 113.61781 * 174.43480 * 16 15 14 24 24 C 1.53781 * 87.08176 * 270.80118 * 23 16 15 25 25 H 1.09001 * 113.61419 * 89.11330 * 24 23 16 26 26 F 1.39901 * 113.61165 * 220.01634 * 24 23 16 27 27 C 1.53784 * 113.68984 * 76.89793 * 16 15 14 28 28 C 1.39828 * 120.00174 * 0.25720 * 11 10 9 29 29 C 1.36571 * 119.99291 * 359.48433 * 28 11 10 30 30 S 1.75868 * 125.11690 * 120.30190 * 4 2 1 31 31 H 0.96698 * 114.00087 * 299.99858 * 1 2 3 32 32 H 1.08996 * 109.47352 * 119.99701 * 2 1 3 33 33 H 1.48500 * 110.00255 * 178.67925 * 3 2 1 34 34 H 1.48508 * 110.00284 * 300.00270 * 3 2 1 35 35 H 1.08000 * 122.45955 * 0.02562 * 5 4 2 36 36 H 1.08002 * 122.64537 * 180.02562 * 6 5 4 37 37 H 1.07995 * 119.99561 * 359.95186 * 9 8 7 38 38 H 1.08002 * 119.99840 * 180.02562 * 10 9 8 39 39 H 0.96998 * 120.00030 * 359.97438 * 14 12 11 40 40 H 1.09001 * 109.47279 * 62.98901 * 15 14 12 41 41 H 1.08999 * 109.47023 * 302.98924 * 15 14 12 42 42 H 1.08005 * 120.00314 * 0.02562 * 18 17 16 43 43 H 1.07997 * 120.00645 * 180.25373 * 19 18 17 44 44 H 1.08005 * 120.00232 * 179.76778 * 20 19 18 45 45 H 1.07992 * 120.00134 * 179.97438 * 21 20 19 46 46 H 1.08000 * 119.99871 * 359.97438 * 22 17 16 47 47 H 1.09000 * 113.61083 * 25.35142 * 23 16 15 48 48 H 1.08999 * 113.61497 * 156.24827 * 23 16 15 49 49 H 1.09004 * 113.61283 * 203.67623 * 27 16 15 50 50 H 1.09003 * 113.61576 * 334.50009 * 27 16 15 51 51 H 1.08004 * 120.00513 * 179.74763 * 28 11 10 52 52 H 1.08007 * 119.99466 * 180.25782 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6722 -1.9846 -1.5429 6 6 2.2382 -2.4243 -2.7200 7 6 2.9684 -1.4974 -3.3753 8 6 3.6738 -1.7155 -4.6529 9 6 4.4014 -0.6738 -5.2365 10 6 5.0547 -0.8759 -6.4186 11 6 4.9964 -2.1246 -7.0450 12 6 5.7019 -2.3428 -8.3226 13 8 6.3342 -1.4368 -8.8304 14 7 5.6453 -3.5463 -8.9267 15 6 6.3461 -3.7630 -10.1948 16 6 6.0610 -5.1789 -10.6996 17 6 6.3887 -6.2404 -9.6812 18 6 5.3753 -6.8393 -8.9565 19 6 5.6753 -7.8163 -8.0258 20 6 6.9898 -8.1872 -7.8125 21 6 8.0038 -7.5842 -8.5331 22 6 7.7032 -6.6109 -9.4676 23 6 6.6411 -5.4640 -12.0949 24 6 5.3146 -4.9376 -12.6677 25 1 5.3125 -3.8624 -12.8468 26 9 4.8456 -5.6728 -13.7616 27 6 4.6685 -5.3408 -11.3317 28 6 4.2648 -3.1649 -6.4639 29 6 3.6159 -2.9643 -5.2791 30 16 2.9529 0.0094 -2.4680 31 1 -0.3933 0.4417 0.7650 32 1 1.7923 -0.5138 0.8900 33 1 3.5345 1.7704 0.0322 34 1 1.5614 2.4680 -1.2085 35 1 1.0639 -2.6224 -0.9186 36 1 2.1077 -3.4309 -3.0888 37 1 4.4464 0.2906 -4.7526 38 1 5.6171 -0.0714 -6.8691 39 1 5.1411 -4.2691 -8.5215 40 1 7.4185 -3.6405 -10.0428 41 1 5.9983 -3.0381 -10.9307 42 1 4.3486 -6.5468 -9.1204 43 1 4.8833 -8.2871 -7.4625 44 1 7.2247 -8.9479 -7.0827 45 1 9.0307 -7.8737 -8.3662 46 1 8.4953 -6.1401 -10.0308 47 1 7.5016 -4.8435 -12.3451 48 1 6.8109 -6.5231 -12.2892 49 1 4.2990 -6.3662 -11.3174 50 1 3.9360 -4.6217 -10.9648 51 1 4.2164 -4.1283 -6.9498 52 1 3.0542 -3.7691 -4.8281 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_13308390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:28:16 Heat of formation + Delta-G solvation = 5.735365 kcal Electronic energy + Delta-G solvation = -36791.088711 eV Core-core repulsion = 31921.958893 eV Total energy + Delta-G solvation = -4869.129818 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 424.130 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -48.59845 -41.85041 -41.02392 -39.88186 -39.00364 -38.71389 -37.41691 -35.59891 -33.66926 -32.41656 -31.98345 -31.86227 -30.76219 -28.78101 -27.21725 -26.94893 -25.18177 -24.46851 -23.99629 -23.34165 -23.19781 -22.55031 -21.68335 -20.24328 -20.19359 -18.97750 -18.58285 -18.33047 -18.30121 -17.52188 -17.16805 -17.10553 -16.61794 -16.41822 -16.26287 -16.13301 -15.92921 -15.66634 -15.59965 -15.49534 -15.39024 -15.03712 -14.80507 -14.76219 -14.52532 -14.40477 -14.30774 -14.26116 -14.15167 -13.70761 -13.57886 -13.47420 -13.30768 -13.26547 -13.17419 -12.69448 -12.54466 -12.42607 -12.38471 -12.21886 -12.17719 -11.85951 -11.83042 -11.36318 -11.29197 -11.19460 -10.89285 -10.37891 -10.28583 -10.24761 -9.83348 -9.73090 -9.66498 -9.12118 -5.26843 -0.99024 0.14538 0.24286 0.31112 0.39576 0.48198 0.66891 1.16327 1.45108 1.54692 1.87091 1.88135 1.92690 2.73759 2.81555 3.10593 3.20210 3.30161 3.39090 3.41490 3.49572 3.57179 3.63032 3.67579 3.74427 3.81857 3.85892 4.09934 4.11027 4.11486 4.19158 4.22456 4.29881 4.33133 4.42576 4.45750 4.47244 4.52444 4.58641 4.63335 4.67255 4.67688 4.70526 4.82724 4.83270 4.90922 4.91625 5.00978 5.08376 5.12531 5.14253 5.18105 5.22447 5.23366 5.25510 5.39464 5.57225 5.62311 5.63459 5.64279 6.08772 6.33469 6.83580 7.01432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.035 4.035 3 Si 0.747 3.253 4 C -0.186 4.186 5 C -0.103 4.103 6 C -0.112 4.112 7 C -0.153 4.153 8 C 0.005 3.995 9 C -0.132 4.132 10 C -0.062 4.062 11 C -0.148 4.148 12 C 0.558 3.442 13 O -0.577 6.577 14 N -0.706 5.706 15 C 0.145 3.855 16 C -0.042 4.042 17 C -0.074 4.074 18 C -0.125 4.125 19 C -0.120 4.120 20 C -0.132 4.132 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.138 4.138 24 C 0.054 3.946 25 H 0.123 0.877 26 F -0.223 7.223 27 C -0.145 4.145 28 C -0.066 4.066 29 C -0.104 4.104 30 S 0.057 5.943 31 H 0.407 0.593 32 H 0.112 0.888 33 H -0.273 1.273 34 H -0.286 1.286 35 H 0.166 0.834 36 H 0.177 0.823 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.411 0.589 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.104 0.896 50 H 0.095 0.905 51 H 0.160 0.840 52 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 -4.263 6.908 8.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.148 4.148 3 Si 0.652 3.348 4 C -0.303 4.303 5 C -0.133 4.133 6 C -0.142 4.142 7 C -0.269 4.269 8 C 0.003 3.997 9 C -0.151 4.151 10 C -0.081 4.081 11 C -0.152 4.152 12 C 0.347 3.653 13 O -0.458 6.458 14 N -0.359 5.359 15 C 0.022 3.978 16 C -0.043 4.043 17 C -0.074 4.074 18 C -0.143 4.143 19 C -0.138 4.138 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.140 4.140 23 C -0.176 4.176 24 C 0.018 3.982 25 H 0.141 0.859 26 F -0.204 7.204 27 C -0.182 4.182 28 C -0.085 4.085 29 C -0.123 4.123 30 S 0.324 5.676 31 H 0.259 0.741 32 H 0.129 0.871 33 H -0.200 1.200 34 H -0.212 1.212 35 H 0.183 0.817 36 H 0.194 0.806 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.250 0.750 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.150 0.850 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.115 0.885 48 H 0.117 0.883 49 H 0.122 0.878 50 H 0.113 0.887 51 H 0.177 0.823 52 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.526 -1.912 5.355 5.887 hybrid contribution -0.390 -1.743 -0.031 1.786 sum -1.915 -3.655 5.324 6.736 Atomic orbital electron populations 1.86452 1.16547 1.82333 1.51639 1.24019 0.86149 1.09457 0.95221 0.94126 0.78741 0.76382 0.85538 1.24099 1.06559 0.98325 1.01315 1.20293 1.00625 0.94684 0.97725 1.20738 0.97293 1.01420 0.94799 1.23172 1.06953 0.97203 0.99594 1.18460 0.95152 0.94795 0.91257 1.20987 0.98661 0.99111 0.96299 1.20914 0.96549 0.96651 0.93949 1.20020 1.02914 0.96064 0.96190 1.18378 0.80017 0.82382 0.84546 1.90790 1.44351 1.43817 1.66822 1.45702 1.53168 1.12905 1.24102 1.21171 0.97435 0.94100 0.85089 1.20583 0.98041 0.92422 0.93239 1.19476 0.93676 0.97100 0.97136 1.21277 0.99576 0.97144 0.96296 1.21438 0.96969 0.97233 0.98159 1.21472 0.93388 1.00235 0.99865 1.21390 1.00179 0.96742 0.96371 1.21139 0.96353 0.97867 0.98603 1.23639 0.97751 1.03704 0.92523 1.23374 0.95943 0.96581 0.82291 0.85908 1.92788 1.89958 1.79705 1.57966 1.23748 0.96180 1.04461 0.93835 1.21230 0.93836 0.98507 0.94887 1.21192 0.99872 0.96151 0.95127 1.84463 1.50532 1.15732 1.16914 0.74135 0.87074 1.19950 1.21245 0.81682 0.80609 0.85698 0.85172 0.75014 0.91183 0.90232 0.84100 0.84112 0.85032 0.85347 0.85736 0.88533 0.88306 0.87771 0.88690 0.82292 0.81773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.07 12.83 -148.98 -1.91 -0.85 16 2 C -0.04 0.06 2.95 71.24 0.21 0.27 16 3 Si 0.75 -1.01 30.96 68.60 2.12 1.11 16 4 C -0.19 -0.70 5.76 24.66 0.14 -0.56 16 5 C -0.10 -0.14 10.00 21.14 0.21 0.07 16 6 C -0.11 -0.03 9.64 21.42 0.21 0.17 16 7 C -0.15 -0.60 6.37 23.98 0.15 -0.45 16 8 C 0.01 0.02 5.88 -20.05 -0.12 -0.10 16 9 C -0.13 -0.69 9.54 22.26 0.21 -0.48 16 10 C -0.06 -0.38 9.53 22.26 0.21 -0.17 16 11 C -0.15 -0.56 5.88 -20.05 -0.12 -0.68 16 12 C 0.56 3.38 7.76 86.70 0.67 4.05 16 13 O -0.58 -8.21 16.33 -4.01 -0.07 -8.28 16 14 N -0.71 0.57 5.30 -466.24 -2.47 -1.91 16 15 C 0.15 -0.22 4.97 86.38 0.43 0.20 16 16 C -0.04 0.19 0.73 -52.40 -0.04 0.15 16 17 C -0.07 0.24 4.22 -19.87 -0.08 0.15 16 18 C -0.13 0.62 8.11 22.27 0.18 0.80 16 19 C -0.12 0.50 10.05 22.27 0.22 0.72 16 20 C -0.13 0.30 10.05 22.27 0.22 0.52 16 21 C -0.13 0.14 10.05 22.27 0.22 0.36 16 22 C -0.12 0.16 9.38 22.27 0.21 0.37 16 23 C -0.14 0.52 6.76 31.12 0.21 0.73 16 24 C 0.05 -0.12 5.32 31.12 0.17 0.04 16 25 H 0.12 -0.58 7.61 -2.39 -0.02 -0.60 16 26 F -0.22 -1.05 17.41 44.97 0.78 -0.27 16 27 C -0.14 0.73 6.10 31.12 0.19 0.92 16 28 C -0.07 0.16 9.48 22.26 0.21 0.37 16 29 C -0.10 0.22 9.48 22.26 0.21 0.43 16 30 S 0.06 0.37 19.46 -56.49 -1.10 -0.72 16 31 H 0.41 -5.12 8.74 -74.06 -0.65 -5.77 16 32 H 0.11 -0.75 7.96 -2.39 -0.02 -0.77 16 33 H -0.27 -1.13 7.11 99.48 0.71 -0.42 16 34 H -0.29 -1.96 7.11 99.48 0.71 -1.25 16 35 H 0.17 -0.41 8.06 -2.91 -0.02 -0.44 16 36 H 0.18 -1.11 6.88 -2.91 -0.02 -1.13 16 37 H 0.13 0.61 7.26 -2.91 -0.02 0.59 16 38 H 0.13 0.98 7.64 -2.91 -0.02 0.96 16 39 H 0.41 -2.22 5.13 -92.71 -0.48 -2.70 16 40 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.08 -0.08 7.32 -2.39 -0.02 -0.10 16 42 H 0.14 -1.28 7.06 -2.91 -0.02 -1.30 16 43 H 0.14 -1.13 8.06 -2.91 -0.02 -1.15 16 44 H 0.13 -0.64 8.06 -2.91 -0.02 -0.66 16 45 H 0.13 -0.40 8.06 -2.91 -0.02 -0.43 16 46 H 0.12 -0.33 8.02 -2.91 -0.02 -0.35 16 47 H 0.10 -0.52 8.10 -2.39 -0.02 -0.54 16 48 H 0.10 -0.23 8.09 -2.39 -0.02 -0.25 16 49 H 0.10 -0.50 7.47 -2.38 -0.02 -0.52 16 50 H 0.09 -0.63 8.10 -2.39 -0.02 -0.65 16 51 H 0.16 -1.45 6.38 -2.91 -0.02 -1.47 16 52 H 0.16 -1.37 6.74 -2.91 -0.02 -1.39 16 Total: 0.00 -24.71 443.39 1.40 -23.31 By element: Atomic # 1 Polarization: -20.20 SS G_CDS: -0.10 Total: -20.30 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 4.14 Total: 7.90 kcal Atomic # 7 Polarization: 0.57 SS G_CDS: -2.47 Total: -1.91 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -1.98 Total: -9.12 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.78 Total: -0.27 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: 2.12 Total: 1.11 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.10 Total: -0.72 kcal Total: -24.71 1.40 -23.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_13308390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.044 kcal (2) G-P(sol) polarization free energy of solvation -24.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds