Wall clock time and date at job start Sat Mar 6 2021 21:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.46971 * 2 1 4 4 C 1.50699 * 109.47244 * 119.99867 * 2 1 3 5 5 C 1.38055 * 119.80659 * 65.02753 * 4 2 1 6 6 C 1.38708 * 120.08750 * 179.72235 * 5 4 2 7 7 O 1.35654 * 120.14958 * 180.27827 * 6 5 4 8 8 C 1.40139 * 119.69638 * 0.50028 * 6 5 4 9 9 C 1.47528 * 120.18845 * 179.77017 * 8 6 5 10 10 O 1.21588 * 120.00399 * 359.72872 * 9 8 6 11 11 N 1.34777 * 119.99910 * 179.72457 * 9 8 6 12 12 C 1.46506 * 119.99986 * 179.72451 * 11 9 8 13 13 C 1.52999 * 109.47184 * 174.30425 * 12 11 9 14 14 C 1.50709 * 112.84796 * 298.91310 * 13 12 11 15 15 C 1.38234 * 120.00122 * 113.65042 * 14 13 12 16 16 C 1.38230 * 119.99773 * 179.76199 * 15 14 13 17 17 C 1.38234 * 120.00311 * 0.51504 * 16 15 14 18 18 C 1.38237 * 119.99957 * 359.73660 * 17 16 15 19 19 C 1.38235 * 119.99754 * 293.92204 * 14 13 12 20 20 C 1.53776 * 113.61474 * 167.71849 * 13 12 11 21 21 C 1.54052 * 86.98171 * 270.83496 * 20 13 12 22 22 H 1.09003 * 113.61426 * 89.11736 * 21 20 13 23 23 F 1.39908 * 113.62157 * 220.02192 * 21 20 13 24 24 C 1.53780 * 87.08041 * 334.56669 * 21 20 13 25 25 C 1.39705 * 119.61708 * 359.50104 * 8 6 5 26 26 C 1.37787 * 119.90913 * 0.24631 * 25 8 6 27 27 H 0.96703 * 114.00183 * 299.99994 * 1 2 3 28 28 H 1.09001 * 109.47328 * 240.00608 * 2 1 3 29 29 H 1.48502 * 110.00304 * 178.68238 * 3 2 1 30 30 H 1.48497 * 110.00258 * 300.00159 * 3 2 1 31 31 H 1.08010 * 119.95130 * 359.97438 * 5 4 2 32 32 H 0.96704 * 113.99745 * 270.22810 * 7 6 5 33 33 H 0.97001 * 120.00043 * 0.02562 * 11 9 8 34 34 H 1.09002 * 109.47037 * 294.30703 * 12 11 9 35 35 H 1.08994 * 109.46900 * 54.30554 * 12 11 9 36 36 H 1.08003 * 119.99902 * 359.97438 * 15 14 13 37 37 H 1.08004 * 120.00263 * 180.22767 * 16 15 14 38 38 H 1.07996 * 120.00297 * 179.72284 * 17 16 15 39 39 H 1.08003 * 120.00460 * 179.97438 * 18 17 16 40 40 H 1.07997 * 120.00103 * 0.02562 * 19 14 13 41 41 H 1.08999 * 113.61741 * 25.42959 * 20 13 12 42 42 H 1.09000 * 113.61220 * 156.33897 * 20 13 12 43 43 H 1.08991 * 113.61606 * 270.88012 * 24 21 20 44 44 H 1.08998 * 113.61574 * 139.97222 * 24 21 20 45 45 H 1.08005 * 120.04448 * 180.26987 * 25 8 6 46 46 H 1.07998 * 119.85106 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6833 -2.0586 1.3938 6 6 2.1479 -2.7195 2.5214 7 8 1.9098 -4.0455 2.6805 8 6 2.8605 -2.0101 3.4976 9 6 3.3552 -2.7012 4.7035 10 8 3.1410 -3.8884 4.8549 11 7 4.0449 -2.0164 5.6373 12 6 4.5310 -2.7013 6.8377 13 6 5.3957 -1.7416 7.6575 14 6 6.6101 -1.2605 6.9056 15 6 6.7225 0.0717 6.5543 16 6 7.8386 0.5138 5.8690 17 6 8.8373 -0.3782 5.5257 18 6 8.7224 -1.7114 5.8725 19 6 7.6087 -2.1526 6.5625 20 6 5.7103 -2.2525 9.0734 21 6 4.4134 -1.5545 9.5253 22 1 3.5288 -2.1871 9.4519 23 9 4.5238 -0.9143 10.7644 24 6 4.5967 -0.6101 8.3255 25 6 3.1044 -0.6461 3.3196 26 6 2.6400 -0.0067 2.1908 27 1 -0.3934 0.4417 0.7651 28 1 1.7924 -0.5137 -0.8900 29 1 3.5346 1.7704 0.0321 30 1 1.5614 2.4680 -1.2084 31 1 1.1302 -2.6003 0.6407 32 1 1.0843 -4.2440 3.1435 33 1 4.2156 -1.0692 5.5167 34 1 3.6822 -3.0287 7.4381 35 1 5.1255 -3.5672 6.5463 36 1 5.9400 0.7677 6.8182 37 1 7.9283 1.5553 5.5976 38 1 9.7072 -0.0336 4.9863 39 1 9.5024 -2.4085 5.6040 40 1 7.5186 -3.1943 6.8328 41 1 5.6776 -3.3383 9.1632 42 1 6.6126 -1.8181 9.5038 43 1 5.1951 0.2723 8.5519 44 1 3.6656 -0.3711 7.8118 45 1 3.6566 -0.0937 4.0655 46 1 2.8287 1.0478 2.0543 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_13422076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:28:20 Heat of formation + Delta-G solvation = -71.869921 kcal Electronic energy + Delta-G solvation = -31909.120132 eV Core-core repulsion = 27452.770459 eV Total energy + Delta-G solvation = -4456.349674 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.55003 -41.87396 -41.20623 -39.80453 -38.75747 -38.39171 -37.13695 -35.36096 -32.89181 -31.97094 -31.84397 -31.10981 -28.89898 -27.26663 -26.90436 -25.02586 -23.90197 -23.39249 -23.14550 -22.49132 -21.56306 -20.21874 -19.29413 -18.69386 -18.30735 -18.16357 -17.51362 -17.22100 -16.74957 -16.53743 -16.47386 -16.21241 -16.11705 -15.91027 -15.69242 -15.51416 -15.44712 -15.23168 -14.90926 -14.64872 -14.40873 -14.32289 -14.25210 -13.84099 -13.65393 -13.54512 -13.37187 -13.16837 -12.93611 -12.48502 -12.40622 -12.30279 -12.19674 -12.18174 -11.77635 -11.69621 -11.32334 -11.23218 -10.97458 -10.48750 -10.27517 -10.02147 -9.82175 -9.77950 -9.64143 -4.99086 -0.41875 0.14178 0.41356 0.49733 1.28496 1.65066 1.72383 1.98193 2.00532 2.57780 2.82699 3.11189 3.15352 3.25528 3.42937 3.45966 3.52925 3.58122 3.63415 3.71548 3.80297 3.89447 4.08159 4.12337 4.13282 4.22779 4.26714 4.29997 4.37131 4.49324 4.57658 4.63628 4.66329 4.68311 4.71307 4.73743 4.75599 4.88467 4.96468 5.02379 5.09992 5.13742 5.15123 5.24026 5.29733 5.30606 5.58367 5.59349 5.64471 5.65021 6.10307 6.42968 6.71106 6.75893 7.13378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.085 4.085 3 Si 0.790 3.210 4 C -0.073 4.073 5 C -0.141 4.141 6 C 0.153 3.847 7 O -0.499 6.499 8 C -0.179 4.179 9 C 0.557 3.443 10 O -0.563 6.563 11 N -0.707 5.707 12 C 0.148 3.852 13 C -0.042 4.042 14 C -0.071 4.071 15 C -0.120 4.120 16 C -0.122 4.122 17 C -0.134 4.134 18 C -0.133 4.133 19 C -0.124 4.124 20 C -0.141 4.141 21 C 0.056 3.944 22 H 0.125 0.875 23 F -0.224 7.224 24 C -0.145 4.145 25 C -0.053 4.053 26 C -0.129 4.129 27 H 0.398 0.602 28 H 0.106 0.894 29 H -0.279 1.279 30 H -0.303 1.303 31 H 0.133 0.867 32 H 0.408 0.592 33 H 0.412 0.588 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.165 0.835 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.612 7.351 2.032 7.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.194 4.194 3 Si 0.695 3.305 4 C -0.074 4.074 5 C -0.160 4.160 6 C 0.107 3.893 7 O -0.312 6.312 8 C -0.183 4.183 9 C 0.345 3.655 10 O -0.442 6.442 11 N -0.360 5.360 12 C 0.025 3.975 13 C -0.043 4.043 14 C -0.071 4.071 15 C -0.138 4.138 16 C -0.140 4.140 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.142 4.142 20 C -0.179 4.179 21 C 0.020 3.980 22 H 0.143 0.857 23 F -0.204 7.204 24 C -0.182 4.182 25 C -0.072 4.072 26 C -0.146 4.146 27 H 0.248 0.752 28 H 0.124 0.876 29 H -0.206 1.206 30 H -0.231 1.231 31 H 0.151 0.849 32 H 0.267 0.733 33 H 0.250 0.750 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.183 0.817 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.331 6.704 0.961 6.781 hybrid contribution 0.001 -0.844 -0.156 0.858 sum 0.332 5.860 0.805 5.924 Atomic orbital electron populations 1.86506 1.16873 1.82233 1.50590 1.25411 0.85624 1.11624 0.96698 0.93723 0.77870 0.73933 0.84964 1.20563 0.96547 0.93608 0.96665 1.21348 1.01635 0.94726 0.98258 1.18745 0.94804 0.83236 0.92564 1.84721 1.47135 1.19013 1.80314 1.20434 1.06350 0.95544 0.95927 1.18251 0.78132 0.86186 0.82943 1.90817 1.58491 1.16395 1.78544 1.45633 1.55833 1.13862 1.20671 1.21113 0.97183 0.94084 0.85138 1.20584 0.93379 0.96986 0.93333 1.19488 0.94826 0.94014 0.98786 1.21338 0.98924 0.95026 0.98482 1.21452 0.93847 1.00562 0.98142 1.21448 0.99885 0.93642 1.00208 1.21363 0.98311 0.96610 0.98769 1.21115 0.94289 0.99866 0.98966 1.23685 0.98340 1.02605 0.93251 1.23414 1.00408 0.95616 0.78555 0.85749 1.92791 1.97385 1.83676 1.46594 1.23772 1.01936 0.97476 0.95006 1.21467 0.96322 0.91447 0.97948 1.21224 0.98762 1.01058 0.93523 0.75208 0.87648 1.20561 1.23119 0.84947 0.73253 0.75028 0.90176 0.91811 0.83463 0.84153 0.85255 0.85716 0.86220 0.88887 0.88608 0.87439 0.87916 0.81744 0.81739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.24 12.83 -148.98 -1.91 -0.67 16 2 C -0.08 0.27 2.79 71.24 0.20 0.47 16 3 Si 0.79 -4.77 29.78 68.60 2.04 -2.73 16 4 C -0.07 0.19 5.35 -19.83 -0.11 0.08 16 5 C -0.14 -0.26 9.60 22.34 0.21 -0.04 16 6 C 0.15 0.69 6.72 22.84 0.15 0.85 16 7 O -0.50 -3.78 11.58 -68.77 -0.80 -4.58 16 8 C -0.18 -0.29 5.89 -20.01 -0.12 -0.41 16 9 C 0.56 2.45 7.76 86.69 0.67 3.12 16 10 O -0.56 -7.24 15.15 16.92 0.26 -6.98 16 11 N -0.71 2.01 5.25 -466.27 -2.45 -0.44 16 12 C 0.15 -0.42 4.82 86.38 0.42 -0.01 16 13 C -0.04 0.25 0.63 -52.40 -0.03 0.21 16 14 C -0.07 0.24 4.45 -19.86 -0.09 0.15 16 15 C -0.12 0.63 9.05 22.27 0.20 0.83 16 16 C -0.12 0.45 10.05 22.27 0.22 0.68 16 17 C -0.13 0.16 10.05 22.27 0.22 0.38 16 18 C -0.13 -0.04 10.05 22.27 0.22 0.18 16 19 C -0.12 0.03 9.41 22.27 0.21 0.24 16 20 C -0.14 0.63 7.02 31.21 0.22 0.85 16 21 C 0.06 -0.24 5.32 31.21 0.17 -0.07 16 22 H 0.12 -0.87 7.59 -2.39 -0.02 -0.89 16 23 F -0.22 -0.66 17.41 44.97 0.78 0.13 16 24 C -0.14 1.12 6.12 31.12 0.19 1.32 16 25 C -0.05 0.30 9.53 22.52 0.21 0.52 16 26 C -0.13 0.85 8.64 22.24 0.19 1.04 16 27 H 0.40 -4.39 8.70 -74.06 -0.64 -5.04 16 28 H 0.11 -0.11 7.96 -2.39 -0.02 -0.13 16 29 H -0.28 0.54 7.11 99.48 0.71 1.24 16 30 H -0.30 -0.76 7.11 99.48 0.71 -0.06 16 31 H 0.13 0.32 8.06 -2.91 -0.02 0.30 16 32 H 0.41 0.14 9.06 -74.05 -0.67 -0.53 16 33 H 0.41 -3.39 6.28 -92.71 -0.58 -3.97 16 34 H 0.08 -0.27 7.30 -2.39 -0.02 -0.29 16 35 H 0.06 0.08 8.04 -2.39 -0.02 0.06 16 36 H 0.15 -1.53 6.44 -2.91 -0.02 -1.55 16 37 H 0.14 -1.06 8.06 -2.91 -0.02 -1.09 16 38 H 0.13 -0.47 8.06 -2.91 -0.02 -0.49 16 39 H 0.12 -0.17 8.06 -2.91 -0.02 -0.19 16 40 H 0.12 -0.10 8.06 -2.91 -0.02 -0.13 16 41 H 0.09 -0.52 8.10 -2.39 -0.02 -0.53 16 42 H 0.10 -0.25 8.09 -2.39 -0.02 -0.27 16 43 H 0.11 -0.84 6.82 -2.39 -0.02 -0.86 16 44 H 0.10 -1.12 8.10 -2.39 -0.02 -1.14 16 45 H 0.17 -2.10 6.40 -2.91 -0.02 -2.12 16 46 H 0.17 -2.09 4.88 -2.91 -0.01 -2.11 16 Total: 0.00 -25.15 383.53 0.50 -24.64 By element: Atomic # 1 Polarization: -18.96 SS G_CDS: -0.80 Total: -19.77 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 3.38 Total: 10.39 kcal Atomic # 7 Polarization: 2.01 SS G_CDS: -2.45 Total: -0.44 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -2.45 Total: -12.23 kcal Atomic # 9 Polarization: -0.66 SS G_CDS: 0.78 Total: 0.13 kcal Atomic # 14 Polarization: -4.77 SS G_CDS: 2.04 Total: -2.73 kcal Total: -25.15 0.50 -24.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_13422076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.229 kcal (2) G-P(sol) polarization free energy of solvation -25.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds