Wall clock time and date at job start Sat Mar 6 2021 21:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.46981 * 2 1 4 4 C 1.50700 * 109.47448 * 119.99687 * 2 1 3 5 5 C 1.34184 * 125.43608 * 65.00092 * 4 2 1 6 6 C 1.47016 * 105.95515 * 179.74029 * 5 4 2 7 7 C 1.47379 * 127.19111 * 180.26262 * 6 5 4 8 8 O 1.21606 * 120.00095 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99651 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99758 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47270 * 175.11018 * 10 9 7 12 12 C 1.50700 * 112.85039 * 294.00921 * 11 10 9 13 13 C 1.38231 * 120.00165 * 113.51002 * 12 11 10 14 14 C 1.38239 * 119.99761 * 179.76843 * 13 12 11 15 15 C 1.38239 * 120.00190 * 0.48065 * 14 13 12 16 16 C 1.38242 * 119.99804 * 359.79597 * 15 14 13 17 17 C 1.38231 * 119.99622 * 359.95133 * 16 15 14 18 18 C 1.53779 * 113.61626 * 162.69705 * 11 10 9 19 19 C 1.53773 * 87.08542 * 270.88265 * 18 11 10 20 20 H 1.09007 * 113.61282 * 89.11353 * 19 18 11 21 21 F 1.39898 * 113.69505 * 220.00872 * 19 18 11 22 22 C 1.53785 * 87.08272 * 334.56559 * 19 18 11 23 23 C 1.36416 * 105.61443 * 0.25978 * 6 5 4 24 24 O 1.33649 * 108.39788 * 0.02562 * 23 6 5 25 25 H 0.96703 * 113.99696 * 299.99782 * 1 2 3 26 26 H 1.08999 * 109.47251 * 240.00007 * 2 1 3 27 27 H 1.48506 * 110.00023 * 178.68256 * 3 2 1 28 28 H 1.48500 * 110.00096 * 300.00081 * 3 2 1 29 29 H 1.08004 * 127.01804 * 0.02562 * 5 4 2 30 30 H 0.97001 * 120.00949 * 0.02562 * 9 7 6 31 31 H 1.09005 * 109.46852 * 295.10686 * 10 9 7 32 32 H 1.08999 * 109.47582 * 55.10698 * 10 9 7 33 33 H 1.07992 * 120.00228 * 359.97438 * 13 12 11 34 34 H 1.07998 * 120.00119 * 180.25354 * 14 13 12 35 35 H 1.07990 * 120.00463 * 179.76868 * 15 14 13 36 36 H 1.07998 * 120.00003 * 179.97438 * 16 15 14 37 37 H 1.08007 * 119.99496 * 180.02562 * 17 16 15 38 38 H 1.08994 * 113.61305 * 25.43782 * 18 11 10 39 39 H 1.09008 * 113.61402 * 156.33507 * 18 11 10 40 40 H 1.08993 * 113.61716 * 270.88131 * 22 19 18 41 41 H 1.09001 * 113.68841 * 139.98698 * 22 19 18 42 42 H 1.08002 * 125.79899 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.7552 -2.0122 1.5037 6 6 2.4180 -2.2475 2.7947 7 6 2.5126 -3.5222 3.5283 8 8 2.0072 -4.5278 3.0677 9 7 3.1601 -3.5735 4.7092 10 6 3.2546 -4.8408 5.4382 11 6 4.1362 -4.6534 6.6746 12 6 5.5724 -4.3546 6.3294 13 6 6.1136 -3.1194 6.6331 14 6 7.4324 -2.8470 6.3207 15 6 8.2071 -3.8063 5.6958 16 6 7.6641 -5.0395 5.3870 17 6 6.3469 -5.3137 5.7040 18 6 3.9713 -5.7662 7.7231 19 6 2.8438 -4.9167 8.3328 20 1 1.8624 -5.1221 7.9052 21 9 2.8369 -4.9121 9.7317 22 6 3.5401 -3.6918 7.7163 23 6 2.9273 -1.0394 3.1715 24 8 2.6229 -0.1410 2.2299 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5138 -0.8900 27 1 3.5346 1.7703 0.0321 28 1 1.5614 2.4679 -1.2085 29 1 1.2366 -2.7396 0.8967 30 1 3.5636 -2.7716 5.0765 31 1 2.2583 -5.1575 5.7470 32 1 3.6930 -5.6005 4.7911 33 1 5.5071 -2.3684 7.1173 34 1 7.8564 -1.8834 6.5616 35 1 9.2362 -3.5922 5.4484 36 1 8.2692 -5.7889 4.8984 37 1 5.9229 -6.2774 5.4631 38 1 3.6280 -6.7125 7.3052 39 1 4.8351 -5.8803 8.3782 40 1 4.2859 -3.2388 8.3695 41 1 2.8496 -2.9626 7.2926 42 1 3.4816 -0.8422 4.0773 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_13456056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:28:40 Heat of formation + Delta-G solvation = -40.744372 kcal Electronic energy + Delta-G solvation = -28088.558997 eV Core-core repulsion = 23917.322788 eV Total energy + Delta-G solvation = -4171.236209 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.56591 -43.72652 -41.62604 -40.21720 -38.75100 -37.99730 -35.45938 -33.95029 -32.13198 -31.85168 -31.79756 -28.76946 -27.13293 -26.60825 -25.35519 -24.18777 -23.20591 -22.50525 -22.32053 -21.04759 -19.97948 -19.20537 -18.40215 -17.81781 -17.52545 -17.44045 -17.38731 -16.85094 -16.56353 -16.22306 -16.14010 -15.97386 -15.66243 -15.52170 -15.46232 -14.91708 -14.56005 -14.42808 -14.28067 -14.24196 -14.03946 -13.66125 -13.61842 -13.51976 -13.36607 -12.82229 -12.50879 -12.41683 -12.22114 -12.19355 -11.78619 -11.35843 -11.30544 -11.22658 -10.97232 -10.62775 -10.24520 -9.82813 -9.79729 -9.64923 -4.98096 0.25039 0.40631 0.49140 0.81126 1.17944 1.51180 1.80819 1.93036 1.97581 2.23400 2.81773 3.14142 3.23901 3.30859 3.43151 3.47353 3.58213 3.59519 3.62012 3.87739 3.96632 4.11682 4.12397 4.20674 4.27308 4.29855 4.38446 4.48112 4.49980 4.62008 4.65016 4.67365 4.70667 4.72611 4.87285 4.87856 4.95770 5.09545 5.11141 5.14566 5.25879 5.28490 5.57683 5.63658 5.64453 5.82640 6.09667 6.40901 6.63405 7.09596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.037 4.037 3 Si 0.799 3.201 4 C -0.052 4.052 5 C -0.152 4.152 6 C -0.268 4.268 7 C 0.588 3.412 8 O -0.585 6.585 9 N -0.704 5.704 10 C 0.148 3.852 11 C -0.041 4.041 12 C -0.071 4.071 13 C -0.119 4.119 14 C -0.123 4.123 15 C -0.134 4.134 16 C -0.132 4.132 17 C -0.125 4.125 18 C -0.140 4.140 19 C 0.055 3.945 20 H 0.123 0.877 21 F -0.223 7.223 22 C -0.145 4.145 23 C 0.066 3.934 24 O -0.162 6.162 25 H 0.400 0.600 26 H 0.129 0.871 27 H -0.288 1.288 28 H -0.285 1.285 29 H 0.143 0.857 30 H 0.414 0.586 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 5.993 3.932 7.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.146 4.146 3 Si 0.703 3.297 4 C -0.100 4.100 5 C -0.172 4.172 6 C -0.273 4.273 7 C 0.377 3.623 8 O -0.466 6.466 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.042 4.042 12 C -0.071 4.071 13 C -0.137 4.137 14 C -0.141 4.141 15 C -0.152 4.152 16 C -0.150 4.150 17 C -0.143 4.143 18 C -0.179 4.179 19 C 0.019 3.981 20 H 0.141 0.859 21 F -0.204 7.204 22 C -0.182 4.182 23 C -0.005 4.005 24 O -0.057 6.057 25 H 0.251 0.749 26 H 0.146 0.854 27 H -0.215 1.215 28 H -0.212 1.212 29 H 0.161 0.839 30 H 0.251 0.749 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.166 0.834 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 2.530 5.846 2.684 6.912 hybrid contribution 0.381 -1.210 -0.132 1.275 sum 2.912 4.636 2.551 6.040 Atomic orbital electron populations 1.86546 1.16220 1.82237 1.50361 1.24683 0.85347 1.12246 0.92326 0.93194 0.77773 0.73772 0.84987 1.22771 1.01403 0.92872 0.92980 1.22564 1.02327 0.96004 0.96342 1.21460 1.11238 0.94974 0.99617 1.17450 0.77390 0.86960 0.80501 1.90796 1.49297 1.37505 1.69011 1.45510 1.56351 1.13106 1.20644 1.21127 0.99385 0.85914 0.91147 1.20555 0.91600 0.98970 0.93036 1.19483 0.94019 0.94537 0.99094 1.21331 0.95726 0.96513 1.00129 1.21456 0.94381 1.00042 0.98222 1.21455 1.00782 0.93920 0.99043 1.21368 0.95697 0.97724 1.00243 1.21130 0.94377 0.99695 0.99058 1.23637 0.99144 0.98308 0.96776 1.23351 1.00870 0.99193 0.74641 0.85906 1.92789 1.98037 1.97262 1.32341 1.23779 1.00645 0.96808 0.96983 1.25262 0.96759 0.85047 0.93429 1.83709 1.56917 1.38712 1.26378 0.74879 0.85367 1.21491 1.21168 0.83913 0.74918 0.90355 0.91676 0.83438 0.84223 0.85249 0.85629 0.86088 0.88875 0.88509 0.87345 0.87885 0.72385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.52 12.88 -148.98 -1.92 -1.40 16 2 C -0.04 0.06 2.97 71.24 0.21 0.27 16 3 Si 0.80 -3.08 32.09 68.60 2.20 -0.88 16 4 C -0.05 -0.02 6.18 24.76 0.15 0.14 16 5 C -0.15 -0.75 10.90 23.65 0.26 -0.49 16 6 C -0.27 -0.52 6.31 -18.99 -0.12 -0.64 16 7 C 0.59 2.98 7.81 86.65 0.68 3.66 16 8 O -0.58 -8.85 16.98 -4.05 -0.07 -8.92 16 9 N -0.70 2.27 5.17 -466.42 -2.41 -0.14 16 10 C 0.15 -0.41 4.85 86.38 0.42 0.01 16 11 C -0.04 0.25 0.63 -52.40 -0.03 0.21 16 12 C -0.07 0.27 4.67 -19.87 -0.09 0.17 16 13 C -0.12 0.67 9.05 22.27 0.20 0.87 16 14 C -0.12 0.48 10.05 22.27 0.22 0.71 16 15 C -0.13 0.20 10.05 22.27 0.22 0.42 16 16 C -0.13 0.02 10.05 22.27 0.22 0.24 16 17 C -0.12 0.09 9.33 22.27 0.21 0.29 16 18 C -0.14 0.65 7.00 31.12 0.22 0.86 16 19 C 0.06 -0.23 5.31 31.12 0.17 -0.06 16 20 H 0.12 -0.80 7.61 -2.38 -0.02 -0.82 16 21 F -0.22 -0.68 17.41 44.97 0.78 0.10 16 22 C -0.14 1.16 5.97 31.13 0.19 1.34 16 23 C 0.07 -0.40 11.61 67.39 0.78 0.38 16 24 O -0.16 0.52 8.90 4.53 0.04 0.56 16 25 H 0.40 -3.78 8.70 -74.06 -0.64 -4.42 16 26 H 0.13 -0.15 7.96 -2.39 -0.02 -0.17 16 27 H -0.29 -0.58 7.11 99.48 0.71 0.13 16 28 H -0.28 -0.68 7.11 99.48 0.71 0.03 16 29 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 30 H 0.41 -4.06 7.04 -92.71 -0.65 -4.72 16 31 H 0.08 -0.21 7.31 -2.38 -0.02 -0.23 16 32 H 0.06 0.07 7.95 -2.39 -0.02 0.05 16 33 H 0.15 -1.60 6.44 -2.91 -0.02 -1.62 16 34 H 0.14 -1.07 8.06 -2.91 -0.02 -1.09 16 35 H 0.13 -0.50 8.06 -2.92 -0.02 -0.52 16 36 H 0.13 -0.24 8.06 -2.91 -0.02 -0.26 16 37 H 0.12 -0.18 8.06 -2.91 -0.02 -0.21 16 38 H 0.09 -0.52 8.10 -2.39 -0.02 -0.54 16 39 H 0.10 -0.27 8.10 -2.38 -0.02 -0.29 16 40 H 0.11 -0.88 6.83 -2.39 -0.02 -0.90 16 41 H 0.10 -1.16 7.75 -2.39 -0.02 -1.18 16 42 H 0.26 -4.44 7.47 -2.91 -0.02 -4.46 16 Total: 0.00 -24.75 361.95 2.34 -22.41 By element: Atomic # 1 Polarization: -19.93 SS G_CDS: -0.19 Total: -20.11 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 3.90 Total: 8.38 kcal Atomic # 7 Polarization: 2.27 SS G_CDS: -2.41 Total: -0.14 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -1.95 Total: -9.76 kcal Atomic # 9 Polarization: -0.68 SS G_CDS: 0.78 Total: 0.10 kcal Atomic # 14 Polarization: -3.08 SS G_CDS: 2.20 Total: -0.88 kcal Total: -24.75 2.34 -22.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_13456056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.335 kcal (2) G-P(sol) polarization free energy of solvation -24.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds