Wall clock time and date at job start Sat Mar 6 2021 21:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86307 * 109.46899 * 2 1 4 4 C 1.50693 * 109.47377 * 240.00099 * 2 1 3 5 5 C 1.34852 * 125.89604 * 120.04121 * 4 2 1 6 6 C 1.40889 * 107.41678 * 179.73549 * 5 4 2 7 7 C 1.34848 * 107.41987 * 0.37556 * 6 5 4 8 8 C 1.50698 * 125.89168 * 179.88550 * 7 6 5 9 9 C 1.50690 * 109.47304 * 274.69415 * 8 7 6 10 10 O 1.21287 * 120.00245 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00301 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00319 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47246 * 184.61975 * 12 11 9 14 14 C 1.50700 * 112.85055 * 62.70264 * 13 12 11 15 15 C 1.38228 * 120.00209 * 235.47794 * 14 13 12 16 16 C 1.38242 * 119.99979 * 180.23497 * 15 14 13 17 17 C 1.38236 * 119.99996 * 359.49036 * 16 15 14 18 18 C 1.38230 * 119.99611 * 0.25866 * 17 16 15 19 19 C 1.38237 * 119.99665 * 55.20942 * 14 13 12 20 20 C 1.53782 * 113.61109 * 291.51032 * 13 12 11 21 21 C 1.53777 * 87.08140 * 270.79917 * 20 13 12 22 22 H 1.08992 * 113.61564 * 89.12047 * 21 20 13 23 23 F 1.39900 * 113.61661 * 219.93649 * 21 20 13 24 24 C 1.53780 * 113.68964 * 193.97513 * 13 12 11 25 25 N 1.36345 * 108.21688 * 359.62507 * 7 6 5 26 26 H 0.96697 * 113.99855 * 59.99939 * 1 2 3 27 27 H 1.09001 * 109.47125 * 119.99553 * 2 1 3 28 28 H 1.48495 * 110.00157 * 59.99851 * 3 2 1 29 29 H 1.48504 * 109.99860 * 181.32000 * 3 2 1 30 30 H 1.07997 * 126.28611 * 359.93914 * 5 4 2 31 31 H 1.08005 * 126.28956 * 180.24408 * 6 5 4 32 32 H 1.08999 * 109.47059 * 154.68920 * 8 7 6 33 33 H 1.09005 * 109.46729 * 34.69730 * 8 7 6 34 34 H 0.96998 * 119.99617 * 359.97438 * 11 9 8 35 35 H 1.08995 * 109.47209 * 64.61563 * 12 11 9 36 36 H 1.08998 * 109.46808 * 304.61858 * 12 11 9 37 37 H 1.07997 * 120.00542 * 0.02562 * 15 14 13 38 38 H 1.08000 * 120.00006 * 179.76885 * 16 15 14 39 39 H 1.07996 * 119.99832 * 180.27731 * 17 16 15 40 40 H 1.08007 * 119.99794 * 180.02562 * 18 17 16 41 41 H 1.07999 * 119.99939 * 359.97438 * 19 14 13 42 42 H 1.08996 * 113.61922 * 25.35345 * 20 13 12 43 43 H 1.09006 * 113.61104 * 156.16624 * 20 13 12 44 44 H 1.09003 * 113.61478 * 203.66815 * 24 13 12 45 45 H 1.08997 * 113.61685 * 334.57866 * 24 13 12 46 46 H 0.97002 * 125.63292 * 180.26295 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.7106 -0.1729 -2.1909 6 6 2.9504 -1.1766 -3.1501 7 6 2.3017 -2.2868 -2.7435 8 6 2.2768 -3.6096 -3.4650 9 6 1.1847 -3.5950 -4.5032 10 8 0.4941 -2.6078 -4.6432 11 7 0.9752 -4.6790 -5.2762 12 6 -0.0861 -4.6647 -6.2860 13 6 -0.1874 -6.0445 -6.9392 14 6 -0.5707 -7.1272 -5.9635 15 6 0.2308 -8.2443 -5.8207 16 6 -0.1234 -9.2397 -4.9292 17 6 -1.2736 -9.1130 -4.1728 18 6 -2.0722 -7.9933 -4.3119 19 6 -1.7209 -7.0004 -5.2072 20 6 1.0270 -6.4034 -7.8118 21 6 0.2834 -5.7383 -8.9821 22 1 0.4835 -4.6711 -9.0764 23 9 0.4167 -6.4251 -10.1936 24 6 -1.0206 -6.0566 -8.2316 25 7 1.6772 -2.0076 -1.5641 26 1 -0.3933 0.4417 -0.7650 27 1 1.7924 -0.5138 0.8900 28 1 1.5615 2.4680 1.2084 29 1 3.5346 1.7704 -0.0321 30 1 3.0850 0.8397 -2.2179 31 1 3.5429 -1.0749 -4.0473 32 1 2.0876 -4.4100 -2.7497 33 1 3.2381 -3.7765 -3.9510 34 1 1.5277 -5.4684 -5.1645 35 1 0.1457 -3.9189 -7.0462 36 1 -1.0356 -4.4168 -5.8115 37 1 1.1319 -8.3412 -6.4081 38 1 0.5008 -10.1143 -4.8204 39 1 -1.5479 -9.8885 -3.4732 40 1 -2.9706 -7.8941 -3.7206 41 1 -2.3445 -6.1253 -5.3153 42 1 1.9408 -5.8840 -7.5234 43 1 1.1719 -7.4764 -7.9382 44 1 -1.4362 -7.0347 -8.4740 45 1 -1.7598 -5.2572 -8.2821 46 1 1.1408 -2.6294 -1.0477 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_14644196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:28:46 Heat of formation + Delta-G solvation = -16.951654 kcal Electronic energy + Delta-G solvation = -29738.785048 eV Core-core repulsion = 25510.761612 eV Total energy + Delta-G solvation = -4228.023437 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.57256 -42.33310 -41.59239 -40.19380 -38.75334 -37.70224 -35.28751 -33.16530 -32.04435 -31.91308 -31.85530 -29.83175 -28.09672 -27.06171 -25.36438 -24.69994 -23.25703 -22.49796 -21.85260 -21.34645 -21.02251 -19.93455 -18.92418 -18.49447 -18.00644 -17.51440 -17.18534 -16.63474 -16.59373 -16.39680 -16.25242 -15.98233 -15.61834 -15.49495 -15.29457 -15.07275 -14.62095 -14.57938 -14.55928 -14.32146 -14.11071 -14.07775 -13.89675 -13.71004 -13.59647 -13.47187 -13.26876 -12.72697 -12.49221 -12.44700 -12.17449 -12.07869 -11.99128 -11.72621 -11.33738 -11.25475 -10.99312 -10.64705 -10.10681 -9.84331 -9.79227 -9.65377 -8.95144 -4.93035 0.39197 0.47596 1.10682 1.30176 1.64145 1.68022 1.88322 1.92170 2.27384 2.50290 2.80812 3.15550 3.27639 3.43245 3.49784 3.57475 3.63043 3.69722 3.80815 3.87766 4.04621 4.10080 4.11987 4.18416 4.22730 4.27441 4.38529 4.48831 4.49962 4.61150 4.61964 4.64136 4.65344 4.73073 4.73764 4.79948 4.88365 4.96229 5.08704 5.13050 5.26184 5.28535 5.29702 5.38945 5.56925 5.63136 5.63708 6.00530 6.08003 6.14352 6.50279 6.64134 6.67102 7.24765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.055 4.055 3 Si 0.802 3.198 4 C -0.021 4.021 5 C -0.202 4.202 6 C -0.199 4.199 7 C 0.033 3.967 8 C -0.068 4.068 9 C 0.514 3.486 10 O -0.572 6.572 11 N -0.713 5.713 12 C 0.149 3.851 13 C -0.040 4.040 14 C -0.069 4.069 15 C -0.121 4.121 16 C -0.125 4.125 17 C -0.132 4.132 18 C -0.130 4.130 19 C -0.121 4.121 20 C -0.147 4.147 21 C 0.056 3.944 22 H 0.124 0.876 23 F -0.224 7.224 24 C -0.141 4.141 25 N -0.538 5.538 26 H 0.395 0.605 27 H 0.106 0.894 28 H -0.294 1.294 29 H -0.284 1.284 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.143 0.857 34 H 0.414 0.586 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.879 -3.502 -0.783 4.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.164 4.164 3 Si 0.706 3.294 4 C -0.134 4.134 5 C -0.227 4.227 6 C -0.223 4.223 7 C -0.081 4.081 8 C -0.108 4.108 9 C 0.300 3.700 10 O -0.451 6.451 11 N -0.366 5.366 12 C 0.025 3.975 13 C -0.041 4.041 14 C -0.069 4.069 15 C -0.139 4.139 16 C -0.142 4.142 17 C -0.150 4.150 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.185 4.185 21 C 0.020 3.980 22 H 0.142 0.858 23 F -0.205 7.205 24 C -0.179 4.179 25 N -0.133 5.133 26 H 0.245 0.755 27 H 0.124 0.876 28 H -0.221 1.221 29 H -0.210 1.210 30 H 0.169 0.831 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.161 0.839 34 H 0.251 0.749 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 1.849 -2.646 0.129 3.231 hybrid contribution -0.273 -1.393 0.405 1.476 sum 1.576 -4.039 0.535 4.368 Atomic orbital electron populations 1.86427 1.17635 1.82250 1.50535 1.24985 0.84860 1.11454 0.95104 0.92906 0.77802 0.74410 0.84319 1.20978 1.06200 0.85781 1.00456 1.20912 1.04938 1.00615 0.96251 1.20850 1.06688 0.93006 1.01782 1.19895 1.01290 0.97473 0.89426 1.20230 1.00172 0.93949 0.96472 1.20884 0.84822 0.82288 0.81963 1.90758 1.49628 1.34475 1.70192 1.45747 1.36481 1.17235 1.37138 1.21040 0.91361 0.94377 0.90739 1.20566 0.98165 0.92876 0.92461 1.19450 0.95258 0.95281 0.96933 1.21347 1.00338 0.93362 0.98864 1.21437 0.97117 0.99507 0.96178 1.21439 0.95410 0.98212 0.99980 1.21362 1.00254 0.94423 0.98807 1.21095 0.97074 0.99224 0.96500 1.23796 0.97935 1.03298 0.93429 1.23363 0.98452 0.97410 0.78782 0.85810 1.92788 1.96664 1.82046 1.48990 1.23640 0.97054 1.04350 0.92865 1.41894 1.40895 1.11065 1.19447 0.75530 0.87610 1.22136 1.21007 0.83093 0.83995 0.86018 0.83909 0.74946 0.90732 0.91798 0.83981 0.84552 0.85171 0.85510 0.86182 0.88094 0.87547 0.88714 0.88867 0.74534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.47 12.88 -148.98 -1.92 -3.39 16 2 C -0.05 -0.09 3.08 71.23 0.22 0.13 16 3 Si 0.80 -0.29 30.59 68.60 2.10 1.81 16 4 C -0.02 -0.08 6.50 41.08 0.27 0.19 16 5 C -0.20 -0.87 9.37 22.14 0.21 -0.66 16 6 C -0.20 -0.91 10.76 22.14 0.24 -0.67 16 7 C 0.03 0.08 5.66 41.08 0.23 0.31 16 8 C -0.07 0.32 6.24 29.10 0.18 0.51 16 9 C 0.51 0.09 7.82 87.65 0.69 0.77 16 10 O -0.57 -5.82 16.03 -3.05 -0.05 -5.86 16 11 N -0.71 3.71 5.25 -463.07 -2.43 1.28 16 12 C 0.15 -0.57 4.73 86.38 0.41 -0.16 16 13 C -0.04 0.24 0.67 -52.40 -0.04 0.20 16 14 C -0.07 0.25 4.60 -19.87 -0.09 0.16 16 15 C -0.12 0.53 9.14 22.27 0.20 0.74 16 16 C -0.12 0.39 10.05 22.27 0.22 0.61 16 17 C -0.13 0.21 10.05 22.27 0.22 0.43 16 18 C -0.13 0.09 10.05 22.27 0.22 0.32 16 19 C -0.12 0.14 9.31 22.27 0.21 0.35 16 20 C -0.15 1.05 6.30 31.12 0.20 1.24 16 21 C 0.06 -0.21 5.32 31.12 0.17 -0.04 16 22 H 0.12 -0.79 7.60 -2.39 -0.02 -0.81 16 23 F -0.22 -0.79 17.41 44.97 0.78 0.00 16 24 C -0.14 0.60 7.12 31.12 0.22 0.83 16 25 N -0.54 -1.43 6.07 -171.12 -1.04 -2.47 16 26 H 0.39 -1.43 8.70 -74.06 -0.64 -2.08 16 27 H 0.11 0.20 7.96 -2.39 -0.02 0.18 16 28 H -0.29 -1.73 7.11 99.48 0.71 -1.03 16 29 H -0.28 -1.25 7.11 99.48 0.71 -0.54 16 30 H 0.15 0.12 6.22 -2.91 -0.02 0.11 16 31 H 0.14 0.31 8.06 -2.91 -0.02 0.29 16 32 H 0.12 -1.13 8.14 -2.39 -0.02 -1.15 16 33 H 0.14 -1.43 8.14 -2.38 -0.02 -1.45 16 34 H 0.41 -4.11 8.24 -92.71 -0.76 -4.87 16 35 H 0.07 -0.25 7.31 -2.39 -0.02 -0.27 16 36 H 0.06 -0.02 7.37 -2.39 -0.02 -0.04 16 37 H 0.14 -1.16 5.95 -2.91 -0.02 -1.17 16 38 H 0.14 -0.86 8.06 -2.91 -0.02 -0.88 16 39 H 0.13 -0.53 8.06 -2.91 -0.02 -0.56 16 40 H 0.13 -0.33 8.06 -2.91 -0.02 -0.35 16 41 H 0.12 -0.21 7.48 -2.91 -0.02 -0.23 16 42 H 0.10 -0.99 8.04 -2.39 -0.02 -1.01 16 43 H 0.11 -0.75 6.23 -2.38 -0.01 -0.76 16 44 H 0.09 -0.22 8.09 -2.39 -0.02 -0.24 16 45 H 0.09 -0.50 8.10 -2.39 -0.02 -0.52 16 46 H 0.42 -0.13 8.96 -92.71 -0.83 -0.96 16 Total: 0.00 -22.00 383.98 0.26 -21.74 By element: Atomic # 1 Polarization: -17.20 SS G_CDS: -1.16 Total: -18.36 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 3.98 Total: 5.25 kcal Atomic # 7 Polarization: 2.28 SS G_CDS: -3.47 Total: -1.19 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -1.97 Total: -9.25 kcal Atomic # 9 Polarization: -0.79 SS G_CDS: 0.78 Total: 0.00 kcal Atomic # 14 Polarization: -0.29 SS G_CDS: 2.10 Total: 1.81 kcal Total: -22.00 0.26 -21.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_14644196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.785 kcal (2) G-P(sol) polarization free energy of solvation -21.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds