Wall clock time and date at job start Sat Mar 6 2021 21:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86297 * 109.47226 * 2 1 4 4 C 1.50697 * 109.46673 * 239.99704 * 2 1 3 5 5 C 1.31117 * 118.54384 * 120.00865 * 4 2 1 6 6 N 1.38929 * 121.84659 * 180.14304 * 5 4 2 7 7 C 1.47028 * 118.88414 * 346.65793 * 6 5 4 8 8 C 1.50700 * 109.82114 * 163.20316 * 7 6 5 9 9 O 1.21277 * 120.00370 * 340.00085 * 8 7 6 10 10 N 1.34780 * 119.99699 * 159.99840 * 8 7 6 11 11 C 1.46505 * 119.99787 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47080 * 175.10951 * 11 10 8 13 13 C 1.50694 * 112.84931 * 294.00604 * 12 11 10 14 14 C 1.38241 * 120.00071 * 113.51576 * 13 12 11 15 15 C 1.38233 * 119.99986 * 179.78991 * 14 13 12 16 16 C 1.38228 * 119.99980 * 0.45948 * 15 14 13 17 17 C 1.38240 * 120.00337 * 359.77073 * 16 15 14 18 18 C 1.38231 * 119.99575 * 0.02562 * 17 16 15 19 19 C 1.53777 * 113.61384 * 162.69885 * 12 11 10 20 20 C 1.53775 * 87.08624 * 270.88317 * 19 12 11 21 21 H 1.09003 * 113.61398 * 89.11350 * 20 19 12 22 22 F 1.39891 * 113.69394 * 220.00901 * 20 19 12 23 23 C 1.53784 * 113.61664 * 65.20350 * 12 11 10 24 24 C 1.53547 * 107.65744 * 43.66602 * 7 6 5 25 25 C 1.50203 * 118.54647 * 299.73298 * 4 2 1 26 26 H 0.96705 * 113.99445 * 59.99819 * 1 2 3 27 27 H 1.09001 * 109.46499 * 119.99741 * 2 1 3 28 28 H 1.48504 * 109.99827 * 298.67439 * 3 2 1 29 29 H 1.48496 * 110.00217 * 60.00036 * 3 2 1 30 30 H 1.07997 * 119.07654 * 0.11438 * 5 4 2 31 31 H 0.96996 * 120.55541 * 166.63713 * 6 5 4 32 32 H 1.08998 * 109.82220 * 284.12780 * 7 6 5 33 33 H 0.97004 * 120.00249 * 0.02562 * 10 8 7 34 34 H 1.09002 * 109.46765 * 295.10645 * 11 10 8 35 35 H 1.09002 * 109.46929 * 55.10608 * 11 10 8 36 36 H 1.07999 * 119.99455 * 359.97438 * 14 13 12 37 37 H 1.08003 * 119.99697 * 180.24853 * 15 14 13 38 38 H 1.08005 * 120.00077 * 179.79064 * 16 15 14 39 39 H 1.08001 * 119.99994 * 179.97438 * 17 16 15 40 40 H 1.07999 * 119.99834 * 179.97438 * 18 17 16 41 41 H 1.09005 * 113.61395 * 25.43736 * 19 12 11 42 42 H 1.09003 * 113.61800 * 156.33390 * 19 12 11 43 43 H 1.08989 * 113.61572 * 203.66384 * 23 12 11 44 44 H 1.09005 * 113.61292 * 334.48315 * 23 12 11 45 45 H 1.08997 * 109.62047 * 58.77377 * 24 7 6 46 46 H 1.09006 * 109.61848 * 179.33182 * 24 7 6 47 47 H 1.09006 * 109.33425 * 280.48887 * 25 4 2 48 48 H 1.08998 * 109.33356 * 39.97765 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.6832 -0.0461 -2.0745 6 7 3.1807 -0.6325 -3.2315 7 6 3.1107 -2.0942 -3.3736 8 6 3.3089 -2.4773 -4.8176 9 8 3.1310 -1.6566 -5.6927 10 7 3.6838 -3.7320 -5.1365 11 6 3.8770 -4.1043 -6.5402 12 6 4.4146 -5.5345 -6.6192 13 6 5.7989 -5.6721 -6.0398 14 6 5.9974 -6.4188 -4.8935 15 6 7.2679 -6.5486 -4.3645 16 6 8.3384 -5.9240 -4.9764 17 6 8.1393 -5.1733 -6.1200 18 6 6.8695 -5.0470 -6.6514 19 6 4.2598 -6.1750 -8.0087 20 6 2.8780 -6.6634 -7.5431 21 1 2.0749 -5.9530 -7.7394 22 9 2.5697 -7.9616 -7.9632 23 6 3.4244 -6.5940 -6.1073 24 6 1.7196 -2.5418 -2.9024 25 6 1.5535 -2.1501 -1.4324 26 1 -0.3932 0.4418 -0.7651 27 1 1.7923 -0.5138 0.8900 28 1 1.5881 2.4584 -1.2244 29 1 1.5616 2.4679 1.2084 30 1 2.9221 0.9860 -1.8646 31 1 3.5675 -0.0867 -3.9339 32 1 3.8781 -2.5626 -2.7575 33 1 3.8257 -4.3885 -4.4366 34 1 2.9242 -4.0447 -7.0663 35 1 4.5904 -3.4219 -7.0022 36 1 5.1602 -6.9032 -4.4130 37 1 7.4235 -7.1353 -3.4712 38 1 9.3306 -6.0226 -4.5612 39 1 8.9757 -4.6850 -6.5979 40 1 6.7138 -4.4603 -7.5446 41 1 4.2157 -5.4497 -8.8213 42 1 4.9670 -6.9823 -8.1986 43 1 3.9033 -7.5158 -5.7774 44 1 2.7067 -6.2074 -5.3837 45 1 0.9540 -2.0485 -3.5011 46 1 1.6286 -3.6232 -3.0057 47 1 2.1941 -2.7812 -0.8163 48 1 0.5149 -2.2957 -1.1355 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13458982_15413834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:28:50 Heat of formation + Delta-G solvation = -43.115344 kcal Electronic energy + Delta-G solvation = -30865.014686 eV Core-core repulsion = 26608.545229 eV Total energy + Delta-G solvation = -4256.469458 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.60045 -41.90671 -41.04415 -39.53572 -38.87719 -37.43407 -35.49146 -33.22884 -33.13443 -32.16788 -32.00036 -29.17643 -27.45389 -26.98952 -25.45424 -25.01766 -23.65942 -23.35486 -22.66453 -21.73335 -20.25925 -19.43791 -19.08082 -18.52538 -18.03948 -17.64908 -17.23673 -16.76208 -16.69985 -16.51322 -16.12057 -16.09726 -15.77212 -15.65461 -15.58228 -15.32922 -15.20070 -14.83913 -14.64627 -14.45875 -14.34977 -14.07037 -13.90643 -13.74655 -13.66139 -13.49098 -13.16578 -12.88607 -12.66740 -12.58953 -12.35076 -12.25250 -11.96972 -11.94364 -11.68942 -11.50264 -11.44803 -11.27955 -10.90397 -10.32772 -10.28440 -9.95835 -9.78261 -8.50166 -4.89882 0.27420 0.35978 1.28766 1.38688 1.48418 1.64351 1.75017 2.06013 2.54631 2.68804 2.94249 3.04784 3.23026 3.32729 3.43547 3.48853 3.56909 3.67793 3.69902 3.79976 3.93116 3.94508 3.95771 4.02448 4.12168 4.24609 4.30743 4.34372 4.41694 4.45220 4.46168 4.51702 4.53188 4.55193 4.63189 4.65025 4.74538 4.77537 4.93861 4.98473 4.98701 5.08824 5.12157 5.15664 5.26123 5.43807 5.49196 5.51451 5.52042 5.94204 6.14056 6.31192 6.58981 6.77833 6.99162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.049 4.049 3 Si 0.661 3.339 4 C -0.277 4.277 5 C 0.143 3.857 6 N -0.730 5.730 7 C 0.137 3.863 8 C 0.513 3.487 9 O -0.530 6.530 10 N -0.721 5.721 11 C 0.146 3.854 12 C -0.055 4.055 13 C -0.069 4.069 14 C -0.118 4.118 15 C -0.116 4.116 16 C -0.119 4.119 17 C -0.115 4.115 18 C -0.109 4.109 19 C -0.140 4.140 20 C 0.066 3.934 21 H 0.111 0.889 22 F -0.203 7.203 23 C -0.154 4.154 24 C -0.126 4.126 25 C -0.054 4.054 26 H 0.373 0.627 27 H 0.108 0.892 28 H -0.264 1.264 29 H -0.261 1.261 30 H 0.134 0.866 31 H 0.409 0.591 32 H 0.092 0.908 33 H 0.404 0.596 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 -2.191 0.606 4.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.160 4.160 3 Si 0.563 3.437 4 C -0.287 4.287 5 C 0.022 3.978 6 N -0.363 5.363 7 C 0.028 3.972 8 C 0.299 3.701 9 O -0.405 6.405 10 N -0.373 5.373 11 C 0.022 3.978 12 C -0.055 4.055 13 C -0.069 4.069 14 C -0.136 4.136 15 C -0.134 4.134 16 C -0.137 4.137 17 C -0.133 4.133 18 C -0.127 4.127 19 C -0.178 4.178 20 C 0.030 3.970 21 H 0.129 0.871 22 F -0.184 7.184 23 C -0.192 4.192 24 C -0.165 4.165 25 C -0.091 4.091 26 H 0.220 0.780 27 H 0.126 0.874 28 H -0.189 1.189 29 H -0.186 1.186 30 H 0.151 0.849 31 H 0.246 0.754 32 H 0.109 0.891 33 H 0.238 0.762 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.106 0.894 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.921 -1.226 0.503 4.139 hybrid contribution -0.741 -0.333 -0.505 0.957 sum 3.181 -1.559 -0.002 3.542 Atomic orbital electron populations 1.86564 1.18638 1.79778 1.49170 1.24667 0.83353 1.09174 0.98786 0.95616 0.92264 0.75811 0.79982 1.20920 1.08149 0.98444 1.01206 1.20363 0.93762 0.96634 0.87024 1.44269 1.67993 1.04439 1.19648 1.20989 0.99606 0.84016 0.92621 1.20593 0.76378 0.82069 0.91098 1.90747 1.49949 1.49812 1.50026 1.45811 1.70109 1.12418 1.08989 1.21155 1.01286 0.92807 0.82514 1.20752 0.92747 0.94230 0.97796 1.19369 0.93329 0.98445 0.95744 1.21066 0.97450 0.99253 0.95838 1.21185 0.92698 0.99453 1.00029 1.21240 0.99215 0.97338 0.95937 1.21194 0.97088 0.98786 0.96270 1.20965 0.92373 0.99409 0.99990 1.23647 0.96821 1.01392 0.95930 1.23078 0.97464 0.80886 0.95621 0.87095 1.92832 1.94637 1.39712 1.91207 1.23791 0.98307 1.00058 0.97003 1.21872 0.95016 1.01416 0.98187 1.19941 1.02313 0.92688 0.94158 0.77984 0.87401 1.18885 1.18592 0.84937 0.75411 0.89076 0.76155 0.90652 0.90136 0.85828 0.85836 0.85949 0.85890 0.86097 0.89364 0.87818 0.87724 0.89656 0.90617 0.90352 0.91431 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.99 12.55 -35.23 -0.44 -1.43 16 2 C -0.05 -0.01 2.83 36.00 0.10 0.10 16 3 Si 0.66 -0.25 29.68 -169.99 -5.05 -5.30 16 4 C -0.28 0.06 5.44 -101.34 -0.55 -0.49 16 5 C 0.14 -0.08 9.63 -16.08 -0.15 -0.23 16 6 N -0.73 0.21 5.46 -55.34 -0.30 -0.10 16 7 C 0.14 -0.18 3.36 -68.51 -0.23 -0.41 16 8 C 0.51 -0.01 7.08 -10.98 -0.08 -0.09 16 9 O -0.53 -2.03 16.10 5.56 0.09 -1.94 16 10 N -0.72 1.77 5.18 -60.29 -0.31 1.45 16 11 C 0.15 -0.33 4.85 -4.04 -0.02 -0.35 16 12 C -0.05 0.17 0.63 -154.85 -0.10 0.07 16 13 C -0.07 0.13 4.67 -104.62 -0.49 -0.36 16 14 C -0.12 0.24 9.05 -39.58 -0.36 -0.12 16 15 C -0.12 0.17 10.05 -39.59 -0.40 -0.23 16 16 C -0.12 0.12 10.05 -39.58 -0.40 -0.28 16 17 C -0.12 0.10 10.05 -39.58 -0.40 -0.30 16 18 C -0.11 0.12 9.33 -39.58 -0.37 -0.25 16 19 C -0.14 0.36 7.00 -25.92 -0.18 0.18 16 20 C 0.07 -0.13 5.31 -25.92 -0.14 -0.26 16 21 H 0.11 -0.35 7.61 -51.93 -0.40 -0.75 16 22 F -0.20 -0.31 17.41 2.25 0.04 -0.27 16 23 C -0.15 0.50 5.97 -25.91 -0.15 0.35 16 24 C -0.13 0.18 5.47 -26.43 -0.14 0.04 16 25 C -0.05 0.04 5.83 -28.11 -0.16 -0.12 16 26 H 0.37 -0.25 8.70 45.56 0.40 0.15 16 27 H 0.11 -0.03 7.96 -51.93 -0.41 -0.44 16 28 H -0.26 -0.47 7.10 56.52 0.40 -0.07 16 29 H -0.26 -0.86 7.11 56.52 0.40 -0.46 16 30 H 0.13 -0.25 4.37 -52.49 -0.23 -0.47 16 31 H 0.41 0.00 8.12 -40.82 -0.33 -0.33 16 32 H 0.09 -0.24 8.14 -51.93 -0.42 -0.67 16 33 H 0.40 -1.73 8.08 -40.82 -0.33 -2.06 16 34 H 0.08 -0.16 7.31 -51.93 -0.38 -0.54 16 35 H 0.08 -0.08 7.95 -51.93 -0.41 -0.50 16 36 H 0.12 -0.45 6.44 -52.49 -0.34 -0.79 16 37 H 0.12 -0.35 8.06 -52.48 -0.42 -0.77 16 38 H 0.12 -0.28 8.06 -52.48 -0.42 -0.70 16 39 H 0.12 -0.25 8.06 -52.49 -0.42 -0.68 16 40 H 0.12 -0.24 8.06 -52.49 -0.42 -0.66 16 41 H 0.09 -0.29 8.10 -51.93 -0.42 -0.71 16 42 H 0.10 -0.18 8.10 -51.93 -0.42 -0.60 16 43 H 0.10 -0.30 6.83 -51.94 -0.35 -0.66 16 44 H 0.08 -0.36 7.75 -51.93 -0.40 -0.77 16 45 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 46 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 47 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 48 H 0.08 0.02 7.84 -51.93 -0.41 -0.39 16 LS Contribution 387.14 15.07 5.83 5.83 Total: 0.00 -7.59 387.14 -11.38 -18.97 By element: Atomic # 1 Polarization: -7.44 SS G_CDS: -7.02 Total: -14.45 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -4.22 Total: -2.76 kcal Atomic # 7 Polarization: 1.97 SS G_CDS: -0.61 Total: 1.36 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: -0.35 Total: -3.38 kcal Atomic # 9 Polarization: -0.31 SS G_CDS: 0.04 Total: -0.27 kcal Atomic # 14 Polarization: -0.25 SS G_CDS: -5.05 Total: -5.30 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -7.59 -11.38 -18.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_15413834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.145 kcal (2) G-P(sol) polarization free energy of solvation -7.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds