Wall clock time and date at job start Sat Mar 6 2021 21:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47247 * 2 1 4 4 C 1.50696 * 109.47415 * 239.99679 * 2 1 3 5 5 C 1.38706 * 120.02958 * 285.00346 * 4 2 1 6 6 O 1.35898 * 120.05892 * 359.95367 * 5 4 2 7 7 C 1.42898 * 117.00731 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47375 * 180.02562 * 7 6 5 9 9 O 1.21276 * 119.99905 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99802 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99984 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47315 * 175.10351 * 11 10 8 13 13 C 1.50694 * 112.85133 * 294.01131 * 12 11 10 14 14 C 1.38231 * 120.00527 * 113.51068 * 13 12 11 15 15 C 1.38235 * 120.00261 * 179.74759 * 14 13 12 16 16 C 1.38235 * 119.99900 * 0.54565 * 15 14 13 17 17 C 1.38235 * 119.99963 * 359.70505 * 16 15 14 18 18 C 1.38234 * 120.00150 * 0.02702 * 17 16 15 19 19 C 1.53783 * 113.61412 * 162.69841 * 12 11 10 20 20 C 1.53777 * 87.08283 * 270.89033 * 19 12 11 21 21 H 1.08994 * 113.61698 * 89.11329 * 20 19 12 22 22 F 1.39901 * 113.61291 * 220.02101 * 20 19 12 23 23 C 1.53778 * 113.61000 * 65.20501 * 12 11 10 24 24 C 1.38756 * 119.89039 * 179.97438 * 5 4 2 25 25 C 1.38120 * 119.94153 * 359.97438 * 24 5 4 26 26 C 1.38285 * 120.05818 * 359.97438 * 25 24 5 27 27 C 1.38171 * 120.02906 * 104.95177 * 4 2 1 28 28 H 0.96708 * 114.00330 * 300.00264 * 1 2 3 29 29 H 1.09002 * 109.47262 * 119.99734 * 2 1 3 30 30 H 1.48503 * 110.00047 * 300.00043 * 3 2 1 31 31 H 1.48505 * 110.00267 * 61.31604 * 3 2 1 32 32 H 1.09002 * 109.46610 * 299.99742 * 7 6 5 33 33 H 1.08999 * 109.47064 * 59.99571 * 7 6 5 34 34 H 0.97004 * 120.00041 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.47043 * 295.10520 * 11 10 8 36 36 H 1.09007 * 109.46822 * 55.10641 * 11 10 8 37 37 H 1.08010 * 119.99621 * 359.97438 * 14 13 12 38 38 H 1.08000 * 119.99704 * 180.27319 * 15 14 13 39 39 H 1.07998 * 119.99893 * 179.73117 * 16 15 14 40 40 H 1.07995 * 120.00133 * 179.97438 * 17 16 15 41 41 H 1.08000 * 120.00303 * 179.97438 * 18 17 16 42 42 H 1.09003 * 113.61209 * 25.44115 * 19 12 11 43 43 H 1.08991 * 113.60949 * 156.33658 * 19 12 11 44 44 H 1.09005 * 113.61674 * 203.66698 * 23 12 11 45 45 H 1.08999 * 113.61641 * 334.56737 * 23 12 11 46 46 H 1.07996 * 120.03026 * 179.97438 * 24 5 4 47 47 H 1.08009 * 119.96990 * 179.97438 * 25 24 5 48 48 H 1.08005 * 119.94565 * 179.74368 * 26 25 24 49 49 H 1.08003 * 119.96571 * 0.04588 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.8697 -2.0940 -1.3068 6 8 1.3571 -2.8108 -0.2722 7 6 1.3254 -4.2317 -0.4200 8 6 0.7283 -4.8522 0.8167 9 8 0.3660 -4.1471 1.7345 10 7 0.5968 -6.1908 0.9027 11 6 0.0169 -6.7941 2.1052 12 6 -0.1306 -8.3029 1.8985 13 6 -1.1328 -8.6519 0.8287 14 6 -0.7120 -9.2508 -0.3439 15 6 -1.6321 -9.5757 -1.3231 16 6 -2.9716 -9.2912 -1.1344 17 6 -3.3919 -8.6876 0.0360 18 6 -2.4725 -8.3678 1.0175 19 6 -0.3245 -9.0879 3.2066 20 6 1.2080 -9.1935 3.2784 21 1 1.6789 -8.3621 3.8028 22 9 1.6638 -10.4416 3.7161 23 6 1.2118 -9.0381 1.7484 24 6 2.3326 -2.7452 -2.4413 25 6 2.8530 -2.0145 -3.4915 26 6 2.9124 -0.6351 -3.4133 27 6 2.4528 0.0159 -2.2837 28 1 -0.3934 0.4418 0.7651 29 1 1.7923 -0.5138 0.8900 30 1 1.5615 2.4679 -1.2085 31 1 1.5878 2.4586 1.2242 32 1 0.7182 -4.4933 -1.2867 33 1 2.3397 -4.6051 -0.5609 34 1 0.8862 -6.7547 0.1684 35 1 0.6702 -6.6062 2.9572 36 1 -0.9630 -6.3559 2.2950 37 1 0.3354 -9.4684 -0.4935 38 1 -1.3038 -10.0476 -2.2373 39 1 -3.6899 -9.5411 -1.9013 40 1 -4.4383 -8.4650 0.1832 41 1 -2.8008 -7.8957 1.9317 42 1 -0.7595 -8.4949 4.0112 43 1 -0.8224 -10.0477 3.0700 44 1 1.1339 -9.9845 1.2132 45 1 2.0171 -8.4051 1.3759 46 1 2.2860 -3.8224 -2.5031 47 1 3.2138 -2.5209 -4.3747 48 1 3.3235 -0.0658 -4.2339 49 1 2.5010 1.0932 -2.2246 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_2989392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:29:00 Heat of formation + Delta-G solvation = -60.306734 kcal Electronic energy + Delta-G solvation = -33444.045790 eV Core-core repulsion = 28832.659915 eV Total energy + Delta-G solvation = -4611.385875 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.58385 -41.81318 -41.37050 -40.31777 -38.84552 -38.40576 -37.62850 -35.45156 -32.90009 -32.10292 -31.87098 -31.36557 -30.12951 -27.85094 -27.05301 -26.65224 -25.02486 -23.52028 -23.21884 -22.53093 -22.47634 -21.63434 -19.99867 -19.33435 -18.61909 -18.56925 -18.09535 -17.49817 -17.45002 -17.30762 -16.87680 -16.65376 -16.55581 -16.08669 -15.83466 -15.70526 -15.51947 -15.50271 -15.36565 -15.07163 -14.84082 -14.58007 -14.47940 -14.30231 -13.94561 -13.82232 -13.72417 -13.60842 -13.49796 -13.36790 -13.07768 -12.64748 -12.52737 -12.44166 -12.21411 -12.12812 -11.82244 -11.80585 -11.78430 -11.36338 -11.26690 -11.06534 -10.44422 -10.26844 -9.96600 -9.84694 -9.67010 -9.21362 -4.96911 0.23236 0.38502 0.42439 0.46999 1.27598 1.39432 1.44549 1.56616 1.88810 2.53628 2.66784 2.79934 3.12224 3.22091 3.40643 3.44210 3.48307 3.59097 3.62141 3.77861 3.85642 3.93464 3.95563 4.03693 4.09664 4.10476 4.16277 4.19372 4.25534 4.27552 4.34433 4.45289 4.52517 4.57831 4.62923 4.65164 4.66492 4.68171 4.70605 4.85252 4.93682 4.97613 5.07655 5.12350 5.21663 5.26502 5.28560 5.39404 5.53114 5.55755 5.61483 5.62376 5.75557 6.07485 6.24098 6.40282 6.55662 7.04928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.085 4.085 3 Si 0.780 3.220 4 C -0.130 4.130 5 C 0.129 3.871 6 O -0.311 6.311 7 C 0.036 3.964 8 C 0.516 3.484 9 O -0.568 6.568 10 N -0.705 5.705 11 C 0.149 3.851 12 C -0.041 4.041 13 C -0.072 4.072 14 C -0.119 4.119 15 C -0.124 4.124 16 C -0.134 4.134 17 C -0.132 4.132 18 C -0.124 4.124 19 C -0.141 4.141 20 C 0.056 3.944 21 H 0.125 0.875 22 F -0.224 7.224 23 C -0.145 4.145 24 C -0.211 4.211 25 C -0.074 4.074 26 C -0.155 4.155 27 C -0.090 4.090 28 H 0.388 0.612 29 H 0.067 0.933 30 H -0.283 1.283 31 H -0.290 1.290 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.417 0.583 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.157 0.843 47 H 0.157 0.843 48 H 0.151 0.849 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.572 -3.442 -4.792 7.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.193 4.193 3 Si 0.684 3.316 4 C -0.131 4.131 5 C 0.083 3.917 6 O -0.224 6.224 7 C -0.042 4.042 8 C 0.302 3.698 9 O -0.446 6.446 10 N -0.359 5.359 11 C 0.025 3.975 12 C -0.041 4.041 13 C -0.072 4.072 14 C -0.137 4.137 15 C -0.142 4.142 16 C -0.152 4.152 17 C -0.150 4.150 18 C -0.142 4.142 19 C -0.179 4.179 20 C 0.020 3.980 21 H 0.142 0.858 22 F -0.204 7.204 23 C -0.182 4.182 24 C -0.230 4.230 25 C -0.092 4.092 26 C -0.173 4.173 27 C -0.107 4.107 28 H 0.237 0.763 29 H 0.085 0.915 30 H -0.210 1.210 31 H -0.218 1.218 32 H 0.132 0.868 33 H 0.145 0.855 34 H 0.255 0.745 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.175 0.825 47 H 0.174 0.826 48 H 0.169 0.831 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.125 -2.411 -4.468 6.542 hybrid contribution -1.594 -0.662 0.455 1.785 sum 2.532 -3.073 -4.013 5.653 Atomic orbital electron populations 1.86553 1.19020 1.80794 1.50228 1.25034 0.83803 1.12367 0.98066 0.94115 0.89859 0.71101 0.76559 1.18864 1.05685 0.90992 0.97545 1.19040 0.94127 0.90978 0.87531 1.86151 1.78109 1.18615 1.39518 1.22693 1.04601 0.79965 0.96960 1.20407 0.78444 0.82719 0.88227 1.90763 1.50155 1.62410 1.41253 1.45532 1.63682 1.05537 1.21152 1.21119 0.99215 0.89672 0.87458 1.20556 0.95328 0.93151 0.95101 1.19486 0.93304 0.99398 0.94985 1.21320 1.00867 0.98720 0.92803 1.21451 0.93176 0.99621 0.99958 1.21457 0.96927 0.98969 0.97797 1.21373 1.00228 0.99102 0.94290 1.21133 0.93214 1.00295 0.99567 1.23640 0.95824 1.01633 0.96781 1.23358 0.95480 0.82550 0.96626 0.85785 1.92791 1.90685 1.45581 1.91382 1.23773 0.96641 1.02498 0.95312 1.21596 1.05558 1.01879 0.93943 1.21410 0.95461 0.94043 0.98281 1.21397 1.02148 0.95258 0.98474 1.21152 0.96870 1.00299 0.92390 0.76296 0.91521 1.21043 1.21762 0.86815 0.85466 0.74528 0.90270 0.91725 0.83678 0.84328 0.85168 0.85539 0.86023 0.88824 0.88559 0.87518 0.87901 0.82550 0.82566 0.83088 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -6.02 12.86 -148.98 -1.92 -7.93 16 2 C -0.09 -0.61 2.37 71.23 0.17 -0.44 16 3 Si 0.78 1.51 30.20 68.60 2.07 3.58 16 4 C -0.13 -0.92 5.30 -19.77 -0.10 -1.02 16 5 C 0.13 0.79 6.66 22.51 0.15 0.94 16 6 O -0.31 -2.58 9.00 -73.37 -0.66 -3.24 16 7 C 0.04 -0.05 5.22 71.24 0.37 0.33 16 8 C 0.52 1.69 7.91 87.66 0.69 2.38 16 9 O -0.57 -8.21 16.50 16.02 0.26 -7.94 16 10 N -0.70 2.88 5.18 -463.05 -2.40 0.48 16 11 C 0.15 -0.45 4.85 86.38 0.42 -0.03 16 12 C -0.04 0.23 0.63 -52.40 -0.03 0.20 16 13 C -0.07 0.23 4.67 -19.87 -0.09 0.14 16 14 C -0.12 0.55 9.05 22.27 0.20 0.75 16 15 C -0.12 0.38 10.05 22.27 0.22 0.60 16 16 C -0.13 0.12 10.05 22.27 0.22 0.35 16 17 C -0.13 -0.03 10.05 22.27 0.22 0.19 16 18 C -0.12 0.04 9.33 22.27 0.21 0.25 16 19 C -0.14 0.61 7.00 31.12 0.22 0.83 16 20 C 0.06 -0.22 5.32 31.12 0.17 -0.05 16 21 H 0.12 -0.82 7.61 -2.39 -0.02 -0.84 16 22 F -0.22 -0.74 17.41 44.97 0.78 0.04 16 23 C -0.14 1.09 5.97 31.12 0.19 1.27 16 24 C -0.21 0.10 9.04 22.37 0.20 0.30 16 25 C -0.07 0.16 10.04 22.25 0.22 0.39 16 26 C -0.15 0.10 10.04 22.28 0.22 0.32 16 27 C -0.09 -0.27 8.66 22.25 0.19 -0.08 16 28 H 0.39 1.33 8.74 -74.05 -0.65 0.68 16 29 H 0.07 0.52 7.83 -2.39 -0.02 0.50 16 30 H -0.28 -1.80 6.75 99.48 0.67 -1.13 16 31 H -0.29 -1.84 7.11 99.48 0.71 -1.14 16 32 H 0.11 -0.67 7.66 -2.39 -0.02 -0.68 16 33 H 0.13 -1.09 7.66 -2.39 -0.02 -1.10 16 34 H 0.42 -4.21 8.08 -92.71 -0.75 -4.96 16 35 H 0.08 -0.24 7.31 -2.39 -0.02 -0.26 16 36 H 0.06 0.06 7.95 -2.38 -0.02 0.04 16 37 H 0.15 -1.36 6.45 -2.91 -0.02 -1.38 16 38 H 0.14 -0.92 8.06 -2.91 -0.02 -0.94 16 39 H 0.13 -0.45 8.06 -2.91 -0.02 -0.47 16 40 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 41 H 0.12 -0.15 8.06 -2.91 -0.02 -0.18 16 42 H 0.09 -0.51 8.10 -2.39 -0.02 -0.53 16 43 H 0.10 -0.24 8.09 -2.39 -0.02 -0.26 16 44 H 0.11 -0.78 6.83 -2.38 -0.02 -0.79 16 45 H 0.10 -1.11 7.75 -2.39 -0.02 -1.13 16 46 H 0.16 -1.12 6.30 -2.91 -0.02 -1.14 16 47 H 0.16 -1.27 8.06 -2.91 -0.02 -1.29 16 48 H 0.15 -0.85 8.06 -2.91 -0.02 -0.87 16 49 H 0.14 0.07 4.90 -2.91 -0.01 0.05 16 Total: 0.00 -27.26 406.79 1.82 -25.44 By element: Atomic # 1 Polarization: -17.65 SS G_CDS: -0.39 Total: -18.04 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 4.06 Total: 7.61 kcal Atomic # 7 Polarization: 2.88 SS G_CDS: -2.40 Total: 0.48 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -2.31 Total: -19.11 kcal Atomic # 9 Polarization: -0.74 SS G_CDS: 0.78 Total: 0.04 kcal Atomic # 14 Polarization: 1.51 SS G_CDS: 2.07 Total: 3.58 kcal Total: -27.26 1.82 -25.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_2989392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.863 kcal (2) G-P(sol) polarization free energy of solvation -27.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds