Wall clock time and date at job start Sat Mar 6 2021 21:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86307 * 109.46763 * 2 1 4 4 C 1.50698 * 109.47183 * 119.99497 * 2 1 3 5 5 C 1.38266 * 119.94141 * 65.00124 * 4 2 1 6 6 C 1.38142 * 120.05442 * 179.97438 * 5 4 2 7 7 C 1.38739 * 119.94725 * 0.02562 * 6 5 4 8 8 O 1.35898 * 120.05767 * 179.97438 * 7 6 5 9 9 C 1.42896 * 116.99863 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47130 * 180.02562 * 9 8 7 11 11 C 1.50694 * 109.47068 * 180.02562 * 10 9 8 12 12 O 1.21282 * 120.00333 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00152 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00132 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47031 * 174.63267 * 14 13 11 16 16 C 1.50699 * 112.90799 * 305.90438 * 15 14 13 17 17 C 1.38240 * 120.00120 * 102.79575 * 16 15 14 18 18 C 1.38231 * 120.00105 * 179.79081 * 17 16 15 19 19 C 1.38236 * 120.00086 * 0.43791 * 18 17 16 20 20 C 1.38238 * 119.99772 * 359.81719 * 19 18 17 21 21 C 1.38232 * 120.00290 * 283.06981 * 16 15 14 22 22 C 1.53782 * 113.61648 * 174.65323 * 15 14 13 23 23 C 1.53787 * 87.08196 * 270.88607 * 22 15 14 24 24 H 1.08996 * 113.61679 * 89.19666 * 23 22 15 25 25 F 1.39895 * 113.61268 * 220.02374 * 23 22 15 26 26 C 1.53785 * 87.08026 * 334.56552 * 23 22 15 27 27 C 1.38733 * 119.88529 * 0.27145 * 7 6 5 28 28 C 1.38154 * 119.94361 * 359.47326 * 27 7 6 29 29 H 0.96698 * 114.00462 * 300.00377 * 1 2 3 30 30 H 1.08992 * 109.47397 * 240.00040 * 2 1 3 31 31 H 1.48502 * 110.00053 * 299.99323 * 3 2 1 32 32 H 1.48496 * 110.00363 * 61.31561 * 3 2 1 33 33 H 1.07995 * 119.97603 * 359.97438 * 5 4 2 34 34 H 1.08001 * 120.02794 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47353 * 59.99978 * 9 8 7 36 36 H 1.09005 * 109.47470 * 300.00084 * 9 8 7 37 37 H 1.08999 * 109.46994 * 59.99833 * 10 9 8 38 38 H 1.08994 * 109.46650 * 299.99671 * 10 9 8 39 39 H 0.97005 * 119.99390 * 359.97438 * 13 11 10 40 40 H 1.08995 * 109.47357 * 54.63322 * 14 13 11 41 41 H 1.09002 * 109.47243 * 294.62788 * 14 13 11 42 42 H 1.08003 * 119.99624 * 0.02562 * 17 16 15 43 43 H 1.08001 * 120.00366 * 180.27994 * 18 17 16 44 44 H 1.08001 * 120.00236 * 179.83724 * 19 18 17 45 45 H 1.07998 * 119.99702 * 179.97438 * 20 19 18 46 46 H 1.08004 * 119.99659 * 359.97438 * 21 16 15 47 47 H 1.09004 * 113.60952 * 25.43012 * 22 15 14 48 48 H 1.08994 * 113.61737 * 156.25163 * 22 15 14 49 49 H 1.08997 * 113.61794 * 270.88960 * 26 23 22 50 50 H 1.08995 * 113.61644 * 139.98000 * 26 23 22 51 51 H 1.07998 * 120.02838 * 179.71959 * 27 7 6 52 52 H 1.07994 * 119.97087 * 180.23455 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.6840 -2.0604 1.3973 6 6 2.1438 -2.7139 2.5241 7 6 2.8539 -2.0144 3.4892 8 8 3.3069 -2.6550 4.5988 9 6 4.0299 -1.8716 5.5503 10 6 4.4563 -2.7582 6.7222 11 6 5.2183 -1.9319 7.7259 12 8 5.4027 -0.7504 7.5238 13 7 5.6949 -2.5059 8.8484 14 6 6.4362 -1.7028 9.8239 15 6 6.7458 -2.5551 11.0562 16 6 5.5169 -3.1903 11.6540 17 6 5.2531 -4.5289 11.4317 18 6 4.1281 -5.1126 11.9836 19 6 3.2621 -4.3556 12.7503 20 6 3.5232 -3.0157 12.9682 21 6 4.6504 -2.4331 12.4199 22 6 7.6361 -1.8442 12.0891 23 6 8.8427 -2.4149 11.3252 24 1 9.1963 -1.7687 10.5218 25 9 9.8745 -2.8594 12.1589 26 6 7.9088 -3.5396 10.8479 27 6 3.0954 -0.6585 3.3224 28 6 2.6379 -0.0106 2.1911 29 1 -0.3934 0.4417 0.7650 30 1 1.7923 -0.5138 -0.8899 31 1 1.5614 2.4679 -1.2086 32 1 1.5877 2.4587 1.2241 33 1 1.1308 -2.6045 0.6461 34 1 1.9500 -3.7684 2.6542 35 1 3.3934 -1.0661 5.9165 36 1 4.9147 -1.4480 5.0750 37 1 5.0930 -3.5634 6.3557 38 1 3.5718 -3.1820 7.1976 39 1 5.5471 -3.4509 9.0102 40 1 5.8347 -0.8429 10.1187 41 1 7.3687 -1.3579 9.3771 42 1 5.9279 -5.1196 10.8299 43 1 3.9243 -6.1595 11.8137 44 1 2.3818 -4.8110 13.1793 45 1 2.8464 -2.4241 13.5669 46 1 4.8545 -1.3862 12.5903 47 1 7.5686 -0.7570 12.0491 48 1 7.5318 -2.2379 13.1001 49 1 7.8799 -4.3977 11.5194 50 1 8.0612 -3.8210 9.8060 51 1 3.6440 -0.1107 4.0743 52 1 2.8290 1.0441 2.0590 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_4549602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:29:07 Heat of formation + Delta-G solvation = -73.014087 kcal Electronic energy + Delta-G solvation = -34370.643648 eV Core-core repulsion = 29603.169121 eV Total energy + Delta-G solvation = -4767.474527 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.173 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -48.57978 -41.70865 -41.29861 -40.42673 -39.19719 -38.75506 -37.30453 -35.40516 -33.41688 -32.09779 -31.96178 -31.85710 -31.46952 -28.73004 -27.12746 -26.49827 -25.58826 -24.73994 -23.44202 -23.19873 -22.53390 -22.21024 -21.42933 -19.98367 -19.44722 -18.44564 -18.39305 -17.73163 -17.51739 -17.50780 -17.13185 -16.81189 -16.56632 -16.43527 -16.19291 -16.14324 -15.98872 -15.66757 -15.49799 -15.45702 -14.98171 -14.75470 -14.68970 -14.49831 -14.41149 -14.29530 -14.24141 -13.95102 -13.64940 -13.56780 -13.50089 -13.32530 -12.87561 -12.83510 -12.50214 -12.39034 -12.28072 -12.19339 -12.06935 -11.81852 -11.79006 -11.58713 -11.34755 -11.25364 -11.08127 -10.59438 -10.18328 -10.04084 -9.83111 -9.65784 -9.22965 -4.93423 0.27646 0.30492 0.40314 0.48374 1.31472 1.51570 1.57920 1.68182 1.93652 2.44079 2.64642 2.82101 3.13404 3.25166 3.43796 3.44313 3.52847 3.57108 3.62029 3.71993 3.82652 3.87155 3.89218 3.90446 4.01977 4.11577 4.12466 4.21556 4.25784 4.30052 4.33871 4.43627 4.49807 4.56094 4.60297 4.64767 4.66686 4.68065 4.68911 4.71622 4.72070 4.78165 4.86656 4.93793 4.97528 5.09580 5.14214 5.17805 5.27563 5.28400 5.31950 5.49076 5.57646 5.62837 5.64233 5.71855 6.09005 6.31482 6.41056 6.48650 7.11027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.075 4.075 3 Si 0.760 3.240 4 C -0.158 4.158 5 C -0.058 4.058 6 C -0.159 4.159 7 C 0.124 3.876 8 O -0.321 6.321 9 C 0.073 3.927 10 C -0.134 4.134 11 C 0.521 3.479 12 O -0.580 6.580 13 N -0.712 5.712 14 C 0.147 3.853 15 C -0.042 4.042 16 C -0.071 4.071 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.133 4.133 20 C -0.130 4.130 21 C -0.122 4.122 22 C -0.141 4.141 23 C 0.054 3.946 24 H 0.126 0.874 25 F -0.225 7.225 26 C -0.144 4.144 27 C -0.210 4.210 28 C -0.081 4.081 29 H 0.385 0.615 30 H 0.126 0.874 31 H -0.302 1.302 32 H -0.286 1.286 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.129 0.871 38 H 0.121 0.879 39 H 0.414 0.586 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.100 0.900 50 H 0.099 0.901 51 H 0.139 0.861 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.637 -3.511 1.956 4.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.184 4.184 3 Si 0.666 3.334 4 C -0.159 4.159 5 C -0.076 4.076 6 C -0.177 4.177 7 C 0.078 3.922 8 O -0.235 6.235 9 C -0.002 4.002 10 C -0.173 4.173 11 C 0.309 3.691 12 O -0.460 6.460 13 N -0.364 5.364 14 C 0.023 3.977 15 C -0.042 4.042 16 C -0.071 4.071 17 C -0.139 4.139 18 C -0.141 4.141 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.140 4.140 22 C -0.179 4.179 23 C 0.019 3.981 24 H 0.144 0.856 25 F -0.206 7.206 26 C -0.182 4.182 27 C -0.228 4.228 28 C -0.099 4.099 29 H 0.234 0.766 30 H 0.144 0.856 31 H -0.231 1.231 32 H -0.212 1.212 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.251 0.749 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.159 0.841 43 H 0.155 0.845 44 H 0.148 0.852 45 H 0.146 0.854 46 H 0.142 0.858 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.157 0.843 52 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.678 -2.373 1.376 3.216 hybrid contribution -1.191 -0.199 1.040 1.594 sum 0.487 -2.573 2.416 3.563 Atomic orbital electron populations 1.86564 1.18649 1.80315 1.50148 1.25098 0.83273 1.11354 0.98654 0.94112 0.90529 0.72561 0.76191 1.20240 1.02632 0.95162 0.97850 1.20993 0.96543 0.93693 0.96414 1.20679 1.01760 1.01393 0.93874 1.19187 0.94547 0.91324 0.87093 1.85957 1.69290 1.38833 1.29425 1.22451 0.95916 0.93511 0.88335 1.21434 1.02927 0.99309 0.93679 1.20550 0.78633 0.87506 0.82445 1.90745 1.59803 1.17828 1.77647 1.45763 1.56234 1.14203 1.20203 1.21115 0.96867 0.93041 0.86642 1.20600 0.91821 0.96866 0.94961 1.19477 0.95289 0.94106 0.98208 1.21263 0.97841 0.94246 1.00585 1.21433 0.94632 1.00779 0.97268 1.21452 1.00217 0.94428 0.99009 1.21379 0.97668 0.95719 1.00027 1.21135 0.94703 1.00241 0.97943 1.23648 0.93013 1.02355 0.98898 1.23397 0.83552 0.98231 0.92946 0.85595 1.92786 1.62571 1.90837 1.74363 1.23745 0.92782 0.97343 1.04308 1.21411 1.06556 0.93884 1.00998 1.21025 0.96047 1.00081 0.92732 0.76587 0.85585 1.23055 1.21244 0.84129 0.84017 0.91850 0.91192 0.85314 0.86074 0.74906 0.91389 0.90222 0.84055 0.84453 0.85202 0.85411 0.85785 0.88623 0.88670 0.88123 0.88212 0.84281 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.82 12.83 -148.98 -1.91 -3.73 16 2 C -0.07 -0.02 2.80 71.24 0.20 0.18 16 3 Si 0.76 -0.54 29.88 68.60 2.05 1.51 16 4 C -0.16 -0.21 5.35 -19.85 -0.11 -0.31 16 5 C -0.06 -0.10 9.68 22.25 0.22 0.11 16 6 C -0.16 -0.40 9.99 22.37 0.22 -0.18 16 7 C 0.12 0.46 6.69 22.51 0.15 0.61 16 8 O -0.32 -0.87 10.14 -92.40 -0.94 -1.80 16 9 C 0.07 0.00 4.03 71.98 0.29 0.29 16 10 C -0.13 0.67 6.07 29.85 0.18 0.85 16 11 C 0.52 -0.38 7.83 87.65 0.69 0.30 16 12 O -0.58 -4.50 15.97 -3.03 -0.05 -4.54 16 13 N -0.71 3.77 5.28 -463.07 -2.45 1.33 16 14 C 0.15 -0.68 4.97 86.38 0.43 -0.25 16 15 C -0.04 0.27 0.70 -52.40 -0.04 0.23 16 16 C -0.07 0.29 4.26 -19.87 -0.08 0.20 16 17 C -0.12 0.63 8.23 22.27 0.18 0.81 16 18 C -0.12 0.46 10.05 22.27 0.22 0.68 16 19 C -0.13 0.26 10.05 22.27 0.22 0.48 16 20 C -0.13 0.15 10.05 22.27 0.22 0.38 16 21 C -0.12 0.22 9.39 22.27 0.21 0.43 16 22 C -0.14 0.70 6.78 31.12 0.21 0.91 16 23 C 0.05 -0.22 5.32 31.12 0.17 -0.05 16 24 H 0.13 -0.90 7.61 -2.39 -0.02 -0.91 16 25 F -0.22 -0.79 17.41 44.97 0.78 -0.01 16 26 C -0.14 1.00 6.09 31.12 0.19 1.19 16 27 C -0.21 -0.53 9.04 22.37 0.20 -0.33 16 28 C -0.08 -0.09 8.66 22.26 0.19 0.10 16 29 H 0.39 -0.73 8.70 -74.06 -0.64 -1.38 16 30 H 0.13 -0.22 7.96 -2.39 -0.02 -0.24 16 31 H -0.30 -2.07 7.11 99.48 0.71 -1.36 16 32 H -0.29 -0.93 7.00 99.48 0.70 -0.24 16 33 H 0.14 -0.05 8.06 -2.91 -0.02 -0.08 16 34 H 0.14 0.00 8.06 -2.91 -0.02 -0.02 16 35 H 0.06 0.10 7.61 -2.39 -0.02 0.09 16 36 H 0.07 0.05 7.63 -2.38 -0.02 0.03 16 37 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 38 H 0.12 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H 0.41 -3.88 7.37 -92.70 -0.68 -4.56 16 40 H 0.07 -0.10 8.13 -2.39 -0.02 -0.12 16 41 H 0.08 -0.39 7.31 -2.39 -0.02 -0.41 16 42 H 0.14 -1.33 7.03 -2.91 -0.02 -1.35 16 43 H 0.14 -0.96 8.06 -2.91 -0.02 -0.98 16 44 H 0.13 -0.56 8.06 -2.91 -0.02 -0.59 16 45 H 0.13 -0.41 8.06 -2.91 -0.02 -0.43 16 46 H 0.12 -0.39 8.03 -2.91 -0.02 -0.41 16 47 H 0.10 -0.63 8.10 -2.38 -0.02 -0.65 16 48 H 0.09 -0.28 8.09 -2.39 -0.02 -0.30 16 49 H 0.10 -0.59 7.45 -2.39 -0.02 -0.61 16 50 H 0.10 -0.95 8.10 -2.39 -0.02 -0.97 16 51 H 0.14 0.11 6.30 -2.91 -0.02 0.09 16 52 H 0.14 -0.31 4.83 -2.91 -0.01 -0.32 16 Total: 0.00 -19.77 428.47 1.32 -18.45 By element: Atomic # 1 Polarization: -17.50 SS G_CDS: -0.34 Total: -17.85 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 4.17 Total: 6.64 kcal Atomic # 7 Polarization: 3.77 SS G_CDS: -2.45 Total: 1.33 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -2.90 Total: -10.08 kcal Atomic # 9 Polarization: -0.79 SS G_CDS: 0.78 Total: -0.01 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: 2.05 Total: 1.51 kcal Total: -19.77 1.32 -18.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_4549602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.567 kcal (2) G-P(sol) polarization free energy of solvation -19.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds