Wall clock time and date at job start Sat Mar 6 2021 21:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86303 * 109.47040 * 2 1 4 4 C 1.50707 * 109.47008 * 240.00284 * 2 1 3 5 5 C 1.38242 * 119.97030 * 120.02050 * 4 2 1 6 6 C 1.38289 * 120.10428 * 179.97438 * 5 4 2 7 7 C 1.38116 * 120.06040 * 359.76855 * 6 5 4 8 8 C 1.38752 * 119.94301 * 0.51018 * 7 6 5 9 9 O 1.35900 * 120.05722 * 179.74845 * 8 7 6 10 10 C 1.42908 * 117.00004 * 359.71685 * 9 8 7 11 11 C 1.50700 * 109.47000 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00243 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99682 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99955 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47329 * 184.95513 * 14 13 11 16 16 C 1.50697 * 112.85263 * 59.66166 * 15 14 13 17 17 C 1.38239 * 120.00136 * 257.14023 * 16 15 14 18 18 C 1.38227 * 120.00177 * 179.97438 * 17 16 15 19 19 C 1.38237 * 120.00282 * 0.02562 * 18 17 16 20 20 C 1.38237 * 119.99661 * 0.25761 * 19 18 17 21 21 C 1.38232 * 119.99952 * 77.11274 * 16 15 14 22 22 C 1.53784 * 113.68869 * 288.39338 * 15 14 13 23 23 C 1.53782 * 87.08387 * 270.87138 * 22 15 14 24 24 H 1.08996 * 113.61318 * 89.11104 * 23 22 15 25 25 F 1.39898 * 113.61488 * 220.01906 * 23 22 15 26 26 C 1.53783 * 113.61592 * 190.85825 * 15 14 13 27 27 C 1.38167 * 119.97147 * 299.99784 * 4 2 1 28 28 H 0.96695 * 113.99934 * 59.99968 * 1 2 3 29 29 H 1.08998 * 109.47077 * 120.00122 * 2 1 3 30 30 H 1.48497 * 109.99823 * 59.99973 * 3 2 1 31 31 H 1.48497 * 109.99648 * 181.32028 * 3 2 1 32 32 H 1.07994 * 119.94494 * 359.97438 * 5 4 2 33 33 H 1.08007 * 119.96864 * 180.02562 * 6 5 4 34 34 H 1.08003 * 120.03027 * 180.27815 * 7 6 5 35 35 H 1.09002 * 109.46542 * 60.00730 * 10 9 8 36 36 H 1.08998 * 109.47148 * 300.00595 * 10 9 8 37 37 H 0.96996 * 120.00182 * 359.97438 * 13 11 10 38 38 H 1.09000 * 109.47403 * 64.95499 * 14 13 11 39 39 H 1.09002 * 109.47160 * 304.95268 * 14 13 11 40 40 H 1.08002 * 119.99626 * 359.97438 * 17 16 15 41 41 H 1.08001 * 120.00475 * 180.02562 * 18 17 16 42 42 H 1.07993 * 120.00536 * 179.97438 * 19 18 17 43 43 H 1.07999 * 120.00096 * 179.72174 * 20 19 18 44 44 H 1.07997 * 120.00103 * 0.02562 * 21 16 15 45 45 H 1.09000 * 113.61385 * 25.42037 * 22 15 14 46 46 H 1.09000 * 113.61109 * 156.31964 * 22 15 14 47 47 H 1.08998 * 113.61365 * 203.74396 * 26 15 14 48 48 H 1.08992 * 113.61461 * 334.65451 * 26 15 14 49 49 H 1.08004 * 120.02538 * 0.04514 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2306 5 6 2.7265 -0.0380 -2.1399 6 6 3.1894 -0.6873 -3.2697 7 6 2.8622 -2.0110 -3.4899 8 6 2.0596 -2.6863 -2.5816 9 8 1.7320 -3.9873 -2.7985 10 6 2.2439 -4.5959 -3.9859 11 6 1.7796 -6.0279 -4.0566 12 8 1.0789 -6.4824 -3.1771 13 7 2.1430 -6.8035 -5.0972 14 6 1.6913 -8.1953 -5.1663 15 6 2.3389 -8.8826 -6.3700 16 6 3.8444 -8.8839 -6.3032 17 6 4.5712 -7.9949 -7.0730 18 6 5.9521 -7.9957 -7.0112 19 6 6.6064 -8.8858 -6.1802 20 6 5.8798 -9.7787 -5.4148 21 6 4.4986 -9.7735 -5.4717 22 6 1.7828 -8.4107 -7.7240 23 6 0.7286 -9.5222 -7.5894 24 1 -0.1740 -9.2068 -7.0660 25 9 0.4577 -10.1860 -8.7907 26 6 1.7354 -10.2601 -6.6912 27 6 1.5973 -2.0332 -1.4487 28 1 -0.3933 0.4417 -0.7650 29 1 1.7924 -0.5138 0.8900 30 1 1.5615 2.4679 1.2085 31 1 3.5346 1.7702 -0.0322 32 1 2.9865 0.9959 -1.9676 33 1 3.8108 -0.1601 -3.9785 34 1 3.2277 -2.5189 -4.3701 35 1 3.3334 -4.5673 -3.9680 36 1 1.8803 -4.0529 -4.8583 37 1 2.7031 -6.4399 -5.8008 38 1 0.6068 -8.2205 -5.2736 39 1 1.9782 -8.7162 -4.2528 40 1 4.0601 -7.2998 -7.7226 41 1 6.5200 -7.3010 -7.6123 42 1 7.6853 -8.8867 -6.1322 43 1 6.3911 -10.4771 -4.7689 44 1 3.9308 -10.4680 -4.8703 45 1 1.3630 -7.4052 -7.6970 46 1 2.4718 -8.5607 -8.5551 47 1 2.4114 -10.9157 -7.2401 48 1 1.2774 -10.7475 -5.8307 49 1 0.9758 -2.5578 -0.7381 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:29:53 Heat of formation + Delta-G solvation = -65.255489 kcal Electronic energy + Delta-G solvation = -32811.632707 eV Core-core repulsion = 28200.032237 eV Total energy + Delta-G solvation = -4611.600470 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.58319 -41.80174 -41.33617 -40.34427 -39.02548 -38.69123 -37.23516 -35.48072 -32.46984 -32.09274 -31.85905 -31.73750 -30.06691 -27.83665 -27.09117 -26.72817 -24.94643 -23.66977 -23.24382 -22.64445 -22.48689 -21.57328 -20.02201 -19.33458 -18.59149 -18.25234 -17.71346 -17.51905 -17.41118 -17.30645 -16.98353 -16.59000 -16.51521 -16.21036 -16.06192 -15.79439 -15.61503 -15.48709 -15.32981 -14.97858 -14.79045 -14.57521 -14.48102 -14.27013 -14.19492 -14.00732 -13.71669 -13.56934 -13.48072 -13.30700 -12.93228 -12.62933 -12.52594 -12.40534 -12.20873 -12.12851 -12.00070 -11.83148 -11.67999 -11.35526 -11.26231 -11.07415 -10.51117 -10.27492 -9.92149 -9.83131 -9.66273 -9.29120 -4.98860 0.20421 0.38676 0.39968 0.48349 1.27499 1.39164 1.45096 1.65220 1.97202 2.52612 2.67361 2.81528 3.12064 3.21567 3.40875 3.48479 3.51968 3.58494 3.61158 3.67130 3.84265 3.86739 3.98607 4.04118 4.11464 4.11804 4.12522 4.20221 4.24577 4.29661 4.35354 4.46730 4.49318 4.58152 4.62796 4.64081 4.67971 4.68922 4.70923 4.85320 4.93060 4.97763 5.08919 5.14010 5.21419 5.24408 5.26832 5.36812 5.44681 5.57160 5.62469 5.64000 5.68888 6.08935 6.23710 6.40359 6.74822 7.04373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.087 4.087 3 Si 0.797 3.203 4 C -0.084 4.084 5 C -0.158 4.158 6 C -0.070 4.070 7 C -0.202 4.202 8 C 0.114 3.886 9 O -0.323 6.323 10 C 0.038 3.962 11 C 0.514 3.486 12 O -0.571 6.571 13 N -0.704 5.704 14 C 0.148 3.852 15 C -0.041 4.041 16 C -0.072 4.072 17 C -0.119 4.119 18 C -0.122 4.122 19 C -0.134 4.134 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.142 4.142 23 C 0.054 3.946 24 H 0.124 0.876 25 F -0.224 7.224 26 C -0.142 4.142 27 C -0.151 4.151 28 H 0.396 0.604 29 H 0.100 0.900 30 H -0.302 1.302 31 H -0.280 1.280 32 H 0.149 0.851 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.417 0.583 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.728 4.315 -7.956 10.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.195 4.195 3 Si 0.702 3.298 4 C -0.085 4.085 5 C -0.175 4.175 6 C -0.087 4.087 7 C -0.221 4.221 8 C 0.069 3.931 9 O -0.236 6.236 10 C -0.040 4.040 11 C 0.300 3.700 12 O -0.449 6.449 13 N -0.358 5.358 14 C 0.025 3.975 15 C -0.042 4.042 16 C -0.072 4.072 17 C -0.137 4.137 18 C -0.140 4.140 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.142 4.142 22 C -0.180 4.180 23 C 0.018 3.982 24 H 0.142 0.858 25 F -0.205 7.205 26 C -0.180 4.180 27 C -0.170 4.170 28 H 0.246 0.754 29 H 0.118 0.882 30 H -0.230 1.230 31 H -0.206 1.206 32 H 0.167 0.833 33 H 0.181 0.819 34 H 0.178 0.822 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.255 0.745 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.115 0.885 48 H 0.112 0.888 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.654 4.088 -6.286 8.826 hybrid contribution 0.334 -1.191 0.213 1.255 sum 4.988 2.897 -6.073 8.376 Atomic orbital electron populations 1.86477 1.17382 1.82308 1.50452 1.25436 0.85321 1.11893 0.96871 0.93507 0.77712 0.74087 0.84536 1.20207 0.97887 0.93276 0.97083 1.21221 1.00120 1.00811 0.95353 1.21340 0.97202 0.93474 0.96710 1.21629 1.02293 0.96923 1.01224 1.19190 0.95762 0.82867 0.95293 1.86124 1.71312 1.23359 1.42825 1.22710 1.01699 0.90677 0.88901 1.20482 0.79918 0.88024 0.81545 1.90775 1.38855 1.75451 1.39857 1.45532 1.53640 1.11984 1.24678 1.21116 0.98817 0.80681 0.96908 1.20566 0.91352 0.97493 0.94747 1.19486 0.93429 0.96809 0.97476 1.21277 0.94069 0.99028 0.99342 1.21447 0.94888 0.99040 0.98652 1.21461 1.00831 0.96013 0.96849 1.21378 0.94368 0.99418 0.99768 1.21145 0.94705 0.99328 0.99061 1.23743 0.97540 1.00048 0.96642 1.23381 0.99041 0.93920 0.81846 0.85803 1.92788 1.95711 1.82655 1.49319 1.23653 0.97848 0.95898 1.00576 1.20287 1.04112 0.94971 0.97597 0.75447 0.88224 1.23045 1.20625 0.83338 0.81889 0.82200 0.86149 0.85370 0.74522 0.90293 0.91646 0.83672 0.84192 0.85184 0.85549 0.85964 0.87969 0.87762 0.88489 0.88823 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.79 12.77 -148.98 -1.90 -3.69 16 2 C -0.09 -0.16 2.82 71.24 0.20 0.04 16 3 Si 0.80 -1.74 29.79 68.60 2.04 0.30 16 4 C -0.08 -0.18 5.39 -19.88 -0.11 -0.29 16 5 C -0.16 0.38 8.67 22.28 0.19 0.58 16 6 C -0.07 0.33 10.04 22.25 0.22 0.55 16 7 C -0.20 0.60 9.04 22.36 0.20 0.80 16 8 C 0.11 0.48 6.69 22.50 0.15 0.63 16 9 O -0.32 -2.25 9.67 -73.38 -0.71 -2.96 16 10 C 0.04 -0.11 5.22 71.24 0.37 0.26 16 11 C 0.51 1.27 7.91 87.66 0.69 1.96 16 12 O -0.57 -8.12 16.50 16.01 0.26 -7.85 16 13 N -0.70 3.33 5.31 -463.07 -2.46 0.88 16 14 C 0.15 -0.51 4.93 86.38 0.43 -0.08 16 15 C -0.04 0.25 0.63 -52.40 -0.03 0.22 16 16 C -0.07 0.30 4.42 -19.87 -0.09 0.21 16 17 C -0.12 0.72 8.44 22.27 0.19 0.91 16 18 C -0.12 0.56 10.05 22.27 0.22 0.78 16 19 C -0.13 0.29 10.05 22.27 0.22 0.51 16 20 C -0.13 0.11 10.05 22.27 0.22 0.34 16 21 C -0.12 0.17 9.39 22.27 0.21 0.38 16 22 C -0.14 1.07 6.08 31.12 0.19 1.26 16 23 C 0.05 -0.21 5.32 31.12 0.17 -0.04 16 24 H 0.12 -0.81 7.60 -2.39 -0.02 -0.83 16 25 F -0.22 -0.77 17.41 44.97 0.78 0.01 16 26 C -0.14 0.65 6.77 31.12 0.21 0.87 16 27 C -0.15 -1.01 9.55 22.36 0.21 -0.79 16 28 H 0.40 -2.17 8.70 -74.06 -0.64 -2.81 16 29 H 0.10 0.41 7.96 -2.39 -0.02 0.39 16 30 H -0.30 -1.71 7.11 99.48 0.71 -1.00 16 31 H -0.28 -0.39 7.11 99.48 0.71 0.31 16 32 H 0.15 -1.05 4.87 -2.91 -0.01 -1.06 16 33 H 0.16 -1.80 8.06 -2.91 -0.02 -1.83 16 34 H 0.16 -1.59 6.30 -2.91 -0.02 -1.61 16 35 H 0.12 -1.03 7.65 -2.39 -0.02 -1.05 16 36 H 0.13 -1.29 7.67 -2.39 -0.02 -1.30 16 37 H 0.42 -4.51 7.70 -92.71 -0.71 -5.23 16 38 H 0.08 -0.26 7.30 -2.39 -0.02 -0.28 16 39 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.15 -1.61 7.03 -2.91 -0.02 -1.64 16 41 H 0.14 -1.16 8.06 -2.91 -0.02 -1.18 16 42 H 0.13 -0.60 8.06 -2.91 -0.02 -0.62 16 43 H 0.13 -0.34 8.06 -2.91 -0.02 -0.36 16 44 H 0.12 -0.28 8.03 -2.91 -0.02 -0.31 16 45 H 0.10 -1.09 8.10 -2.39 -0.02 -1.11 16 46 H 0.10 -0.73 7.44 -2.39 -0.02 -0.75 16 47 H 0.10 -0.28 8.09 -2.39 -0.02 -0.30 16 48 H 0.09 -0.54 8.10 -2.39 -0.02 -0.56 16 49 H 0.11 1.15 8.06 -2.91 -0.02 1.13 16 Total: 0.00 -27.97 408.04 1.78 -26.19 By element: Atomic # 1 Polarization: -21.65 SS G_CDS: -0.32 Total: -21.97 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 4.08 Total: 9.09 kcal Atomic # 7 Polarization: 3.33 SS G_CDS: -2.46 Total: 0.88 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -2.35 Total: -14.50 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.78 Total: 0.01 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: 2.04 Total: 0.30 kcal Total: -27.97 1.78 -26.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.061 kcal (2) G-P(sol) polarization free energy of solvation -27.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds