Wall clock time and date at job start Sat Mar 6 2021 21:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 117.00062 * 2 1 4 4 C 1.38610 * 120.03035 * 180.02562 * 3 2 1 5 5 C 1.38656 * 119.89357 * 180.02562 * 4 3 2 6 6 O 1.35895 * 120.02383 * 179.97438 * 5 4 3 7 7 C 1.42894 * 117.00555 * 0.02562 * 6 5 4 8 8 C 1.50696 * 109.47396 * 180.02562 * 7 6 5 9 9 O 1.21292 * 120.00038 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00197 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00220 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47280 * 184.77647 * 11 10 8 13 13 C 1.50697 * 112.84884 * 294.84546 * 12 11 10 14 14 C 1.38237 * 120.00272 * 102.88004 * 13 12 11 15 15 C 1.38232 * 120.00163 * 180.36703 * 14 13 12 16 16 C 1.38240 * 119.99964 * 359.85763 * 15 14 13 17 17 C 1.38228 * 120.00081 * 0.09774 * 16 15 14 18 18 C 1.38238 * 120.00087 * 359.97438 * 17 16 15 19 19 C 1.53782 * 113.61144 * 163.64818 * 12 11 10 20 20 C 1.53784 * 87.08115 * 270.79789 * 19 12 11 21 21 H 1.08996 * 113.60958 * 89.11581 * 20 19 12 22 22 F 1.39895 * 113.61802 * 220.02015 * 20 19 12 23 23 C 1.53779 * 87.08077 * 334.56961 * 20 19 12 24 24 C 1.38745 * 119.94201 * 0.25121 * 5 4 3 25 25 C 1.50699 * 119.96938 * 179.74581 * 24 5 4 26 26 O 1.42901 * 109.47307 * 75.00664 * 25 24 5 27 27 Si 1.86305 * 109.47076 * 195.00032 * 25 24 5 28 28 C 1.38201 * 120.05759 * 359.49590 * 24 5 4 29 29 C 1.38154 * 120.10457 * 0.50475 * 28 24 5 30 30 H 1.09008 * 109.46724 * 299.99725 * 1 2 3 31 31 H 1.08998 * 109.47453 * 59.99797 * 1 2 3 32 32 H 1.09000 * 109.47197 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.04928 * 0.03844 * 4 3 2 34 34 H 1.08998 * 109.47346 * 59.99927 * 7 6 5 35 35 H 1.08999 * 109.47160 * 299.99996 * 7 6 5 36 36 H 0.96998 * 120.00409 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.46578 * 64.77658 * 11 10 8 38 38 H 1.08999 * 109.47278 * 304.77956 * 11 10 8 39 39 H 1.08003 * 119.99605 * 0.25180 * 14 13 12 40 40 H 1.08000 * 120.00013 * 179.97438 * 15 14 13 41 41 H 1.08003 * 119.99517 * 180.02562 * 16 15 14 42 42 H 1.07995 * 120.00449 * 179.97438 * 17 16 15 43 43 H 1.07996 * 120.00099 * 179.97438 * 18 17 16 44 44 H 1.08991 * 113.61806 * 25.35123 * 19 12 11 45 45 H 1.09001 * 113.61207 * 156.16950 * 19 12 11 46 46 H 1.08996 * 113.61580 * 270.88104 * 23 20 19 47 47 H 1.09006 * 113.61255 * 139.98027 * 23 20 19 48 48 H 1.09000 * 109.47330 * 314.99806 * 25 24 5 49 49 H 0.96696 * 114.00315 * 59.99672 * 26 25 24 50 50 H 1.48504 * 109.99965 * 179.97438 * 27 25 24 51 51 H 1.48500 * 109.99991 * 301.31962 * 27 25 24 52 52 H 1.08000 * 119.94628 * 180.25663 * 28 24 5 53 53 H 1.08005 * 119.96891 * 179.73030 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4301 1.2841 -0.0005 5 6 4.0567 2.5211 0.0000 6 8 5.4136 2.5960 0.0000 7 6 6.1316 1.3605 -0.0011 8 6 7.6124 1.6401 -0.0003 9 8 8.0135 2.7848 0.0006 10 7 8.4911 0.6183 -0.0006 11 6 9.9308 0.8900 -0.0004 12 6 10.6986 -0.4278 -0.1210 13 6 10.5070 -1.3279 1.0723 14 6 9.6554 -2.4137 0.9895 15 6 9.4739 -3.2350 2.0865 16 6 10.1462 -2.9722 3.2655 17 6 10.9985 -1.8871 3.3480 18 6 11.1789 -1.0649 2.2515 19 6 12.1709 -0.2479 -0.5269 20 6 11.6967 -0.3314 -1.9874 21 1 11.4221 0.6336 -2.4131 22 9 12.5529 -1.0672 -2.8135 23 6 10.4958 -1.1400 -1.4687 24 6 3.2971 3.6821 0.0063 25 6 3.9774 5.0268 0.0127 26 8 4.5027 5.3011 -1.2876 27 14 2.7441 6.3445 0.4748 28 6 1.9172 3.6065 0.0016 29 6 1.2906 2.3752 0.0011 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 4.0196 0.3792 -0.0016 34 1 5.8699 0.7890 -0.8916 35 1 5.8700 0.7874 0.8883 36 1 8.1705 -0.2972 -0.0018 37 1 10.2064 1.3874 0.9295 38 1 10.1791 1.5338 -0.8442 39 1 9.1305 -2.6192 0.0683 40 1 8.8082 -4.0830 2.0219 41 1 10.0047 -3.6142 4.1224 42 1 11.5235 -1.6816 4.2691 43 1 11.8445 -0.2169 2.3161 44 1 12.5828 0.7243 -0.2565 45 1 12.8112 -1.0772 -0.2263 46 1 10.6778 -2.2138 -1.4268 47 1 9.5553 -0.8879 -1.9587 48 1 4.7903 5.0193 0.7389 49 1 3.8337 5.3231 -1.9855 50 1 3.4029 7.6754 0.4853 51 1 1.6148 6.3438 -0.4895 52 1 1.3277 4.5115 0.0024 53 1 0.2120 2.3187 0.0018 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_4974312.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:30:01 Heat of formation + Delta-G solvation = -97.412827 kcal Electronic energy + Delta-G solvation = -37945.085277 eV Core-core repulsion = 32857.870550 eV Total energy + Delta-G solvation = -5087.214727 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.172 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -48.60592 -41.91654 -41.57426 -40.59708 -39.77716 -38.79253 -38.33629 -37.01007 -35.46491 -32.32226 -32.07463 -31.85478 -31.53148 -30.16752 -28.40219 -27.83084 -27.07059 -26.13226 -25.00878 -23.62813 -23.21164 -22.55034 -22.49872 -21.68385 -20.04594 -19.97303 -18.64836 -18.35546 -18.07515 -17.84831 -17.58572 -17.47772 -17.22171 -16.78482 -16.68141 -16.55950 -16.48210 -16.13570 -16.04719 -15.72252 -15.65291 -15.49581 -15.37013 -15.18111 -14.87886 -14.56505 -14.48777 -14.44273 -14.26033 -13.76275 -13.68774 -13.56381 -13.48672 -13.35723 -13.32362 -13.14176 -12.54303 -12.49244 -12.41895 -12.30183 -12.22021 -12.03519 -11.84277 -11.66223 -11.62537 -11.35423 -11.28369 -11.07797 -10.51203 -10.27739 -9.82651 -9.70627 -9.66014 -9.10744 -4.92491 0.19796 0.30459 0.40195 0.48871 1.32047 1.38526 1.39868 1.56020 1.96557 2.24077 2.51799 2.56728 2.81815 3.10955 3.20209 3.39712 3.47667 3.49946 3.58276 3.60771 3.72046 3.80059 3.84680 3.93172 4.00758 4.06421 4.11228 4.12251 4.16525 4.18886 4.29906 4.34404 4.40236 4.42583 4.45770 4.46856 4.58175 4.62781 4.66264 4.66966 4.67976 4.70502 4.79108 4.83544 4.92648 5.02106 5.08954 5.14512 5.20795 5.23370 5.25138 5.27802 5.46878 5.57630 5.62817 5.64454 6.09031 6.11452 6.32780 6.39375 6.57697 7.03726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.165 3.835 4 C -0.252 4.252 5 C 0.177 3.823 6 O -0.302 6.302 7 C 0.034 3.966 8 C 0.516 3.484 9 O -0.565 6.565 10 N -0.706 5.706 11 C 0.149 3.851 12 C -0.040 4.040 13 C -0.073 4.073 14 C -0.121 4.121 15 C -0.124 4.124 16 C -0.133 4.133 17 C -0.130 4.130 18 C -0.122 4.122 19 C -0.139 4.139 20 C 0.053 3.947 21 H 0.121 0.879 22 F -0.224 7.224 23 C -0.144 4.144 24 C -0.195 4.195 25 C -0.077 4.077 26 O -0.549 6.549 27 Si 0.780 3.220 28 C -0.041 4.041 29 C -0.237 4.237 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.416 0.584 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.381 0.619 50 H -0.308 1.308 51 H -0.262 1.262 52 H 0.156 0.844 53 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 -6.329 2.774 9.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.118 3.882 4 C -0.271 4.271 5 C 0.131 3.869 6 O -0.214 6.214 7 C -0.043 4.043 8 C 0.302 3.698 9 O -0.443 6.443 10 N -0.360 5.360 11 C 0.026 3.974 12 C -0.041 4.041 13 C -0.073 4.073 14 C -0.139 4.139 15 C -0.142 4.142 16 C -0.151 4.151 17 C -0.148 4.148 18 C -0.140 4.140 19 C -0.177 4.177 20 C 0.018 3.982 21 H 0.139 0.861 22 F -0.204 7.204 23 C -0.181 4.181 24 C -0.196 4.196 25 C -0.185 4.185 26 O -0.357 6.357 27 Si 0.684 3.316 28 C -0.059 4.059 29 C -0.256 4.256 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.170 0.830 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.253 0.747 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.123 0.877 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.230 0.770 50 H -0.237 1.237 51 H -0.188 1.188 52 H 0.173 0.827 53 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.768 -4.836 2.839 8.044 hybrid contribution 0.354 -0.730 -1.113 1.377 sum -5.413 -5.566 1.726 7.954 Atomic orbital electron populations 1.23401 0.76017 1.05690 1.02684 1.86055 1.23736 1.26568 1.87924 1.18869 0.91651 0.84978 0.92672 1.20551 0.93412 0.97412 1.15720 1.18575 0.81696 0.93161 0.93488 1.86218 1.15523 1.31512 1.88122 1.22714 0.88520 0.86555 1.06559 1.20377 0.88410 0.85027 0.75984 1.90790 1.80678 1.23017 1.49771 1.45551 1.05940 1.09512 1.75017 1.21114 0.78702 0.94815 1.02808 1.20545 0.96686 0.93824 0.92998 1.19484 0.97870 0.96044 0.93926 1.21260 0.98519 0.94614 0.99479 1.21438 0.99722 0.99985 0.93019 1.21467 0.96976 0.97801 0.98822 1.21389 0.98867 0.95454 0.99054 1.21157 1.00023 0.99978 0.92878 1.23637 0.95186 1.04995 0.93896 1.23363 0.90082 0.95894 0.88899 0.86119 1.92786 1.72950 1.79535 1.75163 1.23735 0.99228 1.01143 0.94006 1.19603 0.93504 0.93953 1.12576 1.25149 1.06268 0.99654 0.87408 1.86649 1.38541 1.92938 1.17549 0.94112 0.75506 0.73438 0.88590 1.20950 0.92018 0.98815 0.94100 1.21398 1.01613 0.91235 1.11343 0.91120 0.91477 0.86573 0.82953 0.86177 0.86120 0.74671 0.91392 0.90536 0.84046 0.84383 0.85084 0.85270 0.85633 0.88656 0.88292 0.87724 0.88430 0.88447 0.77021 1.23661 1.18793 0.82720 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.11 10.49 -92.43 -0.97 -1.08 16 3 C 0.16 0.22 6.68 22.49 0.15 0.37 16 4 C -0.25 -0.47 8.97 22.46 0.20 -0.27 16 5 C 0.18 0.93 6.66 22.49 0.15 1.08 16 6 O -0.30 -2.43 8.99 -73.34 -0.66 -3.09 16 7 C 0.03 -0.01 5.22 71.23 0.37 0.36 16 8 C 0.52 2.15 7.91 87.66 0.69 2.84 16 9 O -0.56 -8.70 16.50 15.97 0.26 -8.44 16 10 N -0.71 2.05 5.20 -463.05 -2.41 -0.36 16 11 C 0.15 -0.30 4.91 86.38 0.42 0.13 16 12 C -0.04 0.19 0.62 -52.40 -0.03 0.16 16 13 C -0.07 0.23 4.52 -19.87 -0.09 0.14 16 14 C -0.12 0.55 8.52 22.27 0.19 0.74 16 15 C -0.12 0.41 10.05 22.27 0.22 0.63 16 16 C -0.13 0.21 10.05 22.27 0.22 0.44 16 17 C -0.13 0.10 10.05 22.27 0.22 0.32 16 18 C -0.12 0.14 9.39 22.27 0.21 0.35 16 19 C -0.14 0.51 6.77 31.12 0.21 0.72 16 20 C 0.05 -0.11 5.32 31.12 0.17 0.05 16 21 H 0.12 -0.51 7.61 -2.39 -0.02 -0.53 16 22 F -0.22 -1.09 17.41 44.97 0.78 -0.30 16 23 C -0.14 0.80 5.99 31.12 0.19 0.98 16 24 C -0.20 -0.80 5.27 -19.75 -0.10 -0.90 16 25 C -0.08 -0.45 2.37 71.24 0.17 -0.28 16 26 O -0.55 -5.33 12.88 -148.98 -1.92 -7.25 16 27 Si 0.78 0.44 30.25 68.60 2.08 2.51 16 28 C -0.04 0.02 8.65 22.24 0.19 0.21 16 29 C -0.24 0.30 9.04 22.38 0.20 0.51 16 30 H 0.07 -0.62 7.66 -2.38 -0.02 -0.64 16 31 H 0.07 -0.56 7.66 -2.39 -0.02 -0.58 16 32 H 0.12 -1.12 8.14 -2.39 -0.02 -1.14 16 33 H 0.15 -0.38 6.30 -2.91 -0.02 -0.40 16 34 H 0.12 -0.71 7.66 -2.39 -0.02 -0.73 16 35 H 0.12 -0.71 7.66 -2.39 -0.02 -0.73 16 36 H 0.42 -3.52 7.76 -92.71 -0.72 -4.24 16 37 H 0.07 0.04 8.14 -2.39 -0.02 0.03 16 38 H 0.08 -0.05 7.31 -2.39 -0.02 -0.07 16 39 H 0.14 -1.27 7.02 -2.91 -0.02 -1.29 16 40 H 0.14 -0.93 8.06 -2.91 -0.02 -0.96 16 41 H 0.13 -0.55 8.06 -2.91 -0.02 -0.57 16 42 H 0.13 -0.38 8.06 -2.91 -0.02 -0.41 16 43 H 0.13 -0.33 8.03 -2.91 -0.02 -0.36 16 44 H 0.09 -0.48 8.10 -2.39 -0.02 -0.50 16 45 H 0.10 -0.22 8.09 -2.39 -0.02 -0.24 16 46 H 0.10 -0.54 7.44 -2.39 -0.02 -0.56 16 47 H 0.10 -0.77 7.95 -2.38 -0.02 -0.79 16 48 H 0.10 0.88 7.82 -2.39 -0.02 0.86 16 49 H 0.38 0.85 8.70 -74.06 -0.64 0.20 16 50 H -0.31 -2.78 7.11 99.48 0.71 -2.07 16 51 H -0.26 -0.20 6.67 99.48 0.66 0.47 16 52 H 0.16 -0.70 4.85 -2.91 -0.01 -0.71 16 53 H 0.16 -1.01 6.29 -2.91 -0.02 -1.03 16 Total: 0.00 -27.25 436.65 1.84 -25.41 By element: Atomic # 1 Polarization: -16.59 SS G_CDS: -0.40 Total: -16.98 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.07 Total: 9.58 kcal Atomic # 7 Polarization: 2.05 SS G_CDS: -2.41 Total: -0.36 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -3.28 Total: -19.86 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.78 Total: -0.30 kcal Atomic # 14 Polarization: 0.44 SS G_CDS: 2.08 Total: 2.51 kcal Total: -27.25 1.84 -25.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_4974312.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.998 kcal (2) G-P(sol) polarization free energy of solvation -27.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds