Wall clock time and date at job start Sat Mar 6 2021 21:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35990 * 117.00390 * 2 1 4 4 C 1.39149 * 120.07529 * 180.02562 * 3 2 1 5 5 O 1.35987 * 120.07501 * 359.97402 * 4 3 2 6 6 C 1.42900 * 117.00253 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47226 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00001 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99836 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99732 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46748 * 175.95544 * 10 9 7 12 12 C 1.50698 * 112.85411 * 65.11508 * 11 10 9 13 13 C 1.38243 * 119.99529 * 245.84342 * 12 11 10 14 14 C 1.38230 * 119.99431 * 179.74016 * 13 12 11 15 15 C 1.38236 * 120.00273 * 0.55041 * 14 13 12 16 16 C 1.38232 * 119.99985 * 359.70065 * 15 14 13 17 17 C 1.38226 * 120.00282 * 66.11011 * 12 11 10 18 18 C 1.53782 * 113.61512 * 293.90900 * 11 10 9 19 19 C 1.53786 * 87.08373 * 270.88919 * 18 11 10 20 20 H 1.09004 * 113.61165 * 89.11289 * 19 18 11 21 21 F 1.39898 * 113.61421 * 219.93327 * 19 18 11 22 22 C 1.53790 * 113.60947 * 196.30701 * 11 10 9 23 23 C 1.38573 * 119.85326 * 180.25116 * 4 3 2 24 24 C 1.38242 * 119.99729 * 359.46428 * 23 4 3 25 25 C 1.38258 * 120.14711 * 0.51949 * 24 23 4 26 26 C 1.50697 * 119.92385 * 179.74330 * 25 24 23 27 27 O 1.42901 * 109.46708 * 245.01030 * 26 25 24 28 28 Si 1.86297 * 109.47586 * 5.01532 * 26 25 24 29 29 C 1.38238 * 120.14464 * 359.75513 * 25 24 23 30 30 H 1.09002 * 109.47153 * 300.00081 * 1 2 3 31 31 H 1.08997 * 109.47276 * 60.00015 * 1 2 3 32 32 H 1.09008 * 109.47195 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47266 * 60.00110 * 6 5 4 34 34 H 1.09004 * 109.47158 * 300.00336 * 6 5 4 35 35 H 0.96996 * 119.99997 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.46766 * 295.95243 * 10 9 7 37 37 H 1.08994 * 109.47405 * 55.94852 * 10 9 7 38 38 H 1.07997 * 119.99537 * 359.97438 * 13 12 11 39 39 H 1.08011 * 119.99797 * 180.27212 * 14 13 12 40 40 H 1.08002 * 119.99649 * 179.72011 * 15 14 13 41 41 H 1.08004 * 119.99840 * 179.97438 * 16 15 14 42 42 H 1.07997 * 120.00154 * 0.02562 * 17 12 11 43 43 H 1.09004 * 113.60847 * 25.44006 * 18 11 10 44 44 H 1.08998 * 113.61526 * 156.25505 * 18 11 10 45 45 H 1.09005 * 113.61327 * 203.66440 * 22 11 10 46 46 H 1.08995 * 113.61762 * 334.56732 * 22 11 10 47 47 H 1.08000 * 120.00043 * 179.72256 * 23 4 3 48 48 H 1.07998 * 119.92982 * 180.25150 * 24 23 4 49 49 H 1.09002 * 109.47210 * 125.01737 * 26 25 24 50 50 H 0.96704 * 113.99489 * 60.00809 * 27 26 25 51 51 H 1.48503 * 110.00032 * 180.02562 * 28 26 25 52 52 H 1.48494 * 109.99788 * 301.32054 * 28 26 25 53 53 H 1.08006 * 119.99990 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 3.4359 1.2862 -0.0005 5 8 4.1795 0.1476 -0.0005 6 6 5.6003 0.3005 -0.0005 7 6 6.2518 -1.0584 -0.0012 8 8 5.5669 -2.0593 -0.0020 9 7 7.5957 -1.1613 -0.0007 10 6 8.2291 -2.4823 -0.0019 11 6 9.7470 -2.3199 -0.1029 12 6 10.3444 -1.6400 1.1020 13 6 10.9281 -0.3934 0.9735 14 6 11.4712 0.2326 2.0798 15 6 11.4408 -0.3927 3.3123 16 6 10.8618 -1.6414 3.4397 17 6 10.3135 -2.2650 2.3345 18 6 10.2152 -1.7249 -1.4414 19 6 10.2808 -3.1675 -1.9700 20 1 9.3452 -3.5148 -2.4084 21 9 11.3888 -3.4150 -2.7875 22 6 10.4790 -3.6105 -0.5079 23 6 4.0603 2.5233 0.0047 24 6 3.3030 3.6798 -0.0007 25 6 1.9224 3.6057 -0.0005 26 6 1.1018 4.8696 -0.0006 27 8 0.3652 4.9592 1.2207 28 14 2.2309 6.3433 -0.1544 29 6 1.2933 2.3748 0.0000 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 5.9066 0.8503 0.8894 34 1 5.9066 0.8504 -0.8905 35 1 8.1435 -0.3608 -0.0004 36 1 7.9802 -3.0053 0.9215 37 1 7.8676 -3.0578 -0.8541 38 1 10.9563 0.0928 0.0096 39 1 11.9233 1.2085 1.9804 40 1 11.8692 0.0946 4.1757 41 1 10.8384 -2.1301 4.4026 42 1 9.8617 -3.2409 2.4339 43 1 9.4602 -1.1129 -1.9350 44 1 11.1870 -1.2345 -1.3851 45 1 11.5235 -3.6359 -0.1971 46 1 9.9369 -4.5197 -0.2484 47 1 5.1386 2.5839 0.0089 48 1 3.7908 4.6433 -0.0007 49 1 0.4092 4.8531 -0.8422 50 1 0.9188 4.9785 2.0133 51 1 1.4337 7.5962 -0.1551 52 1 3.2008 6.3596 0.9699 53 1 0.2146 2.3196 -0.0003 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_60476.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:30:08 Heat of formation + Delta-G solvation = -96.337730 kcal Electronic energy + Delta-G solvation = -37536.457025 eV Core-core repulsion = 32449.288917 eV Total energy + Delta-G solvation = -5087.168108 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.172 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -48.56980 -41.88249 -41.56570 -40.53113 -39.31681 -38.94520 -38.67831 -37.02567 -35.42328 -32.18172 -31.98161 -31.83667 -31.47944 -30.26003 -28.51846 -27.83409 -27.03633 -26.16764 -24.96658 -23.54366 -23.19909 -22.57366 -22.47839 -21.64338 -20.00535 -19.79296 -18.66541 -18.43400 -18.26104 -17.92518 -17.55051 -17.43993 -17.20739 -16.82874 -16.69383 -16.51845 -16.15944 -16.10117 -15.82329 -15.78035 -15.67904 -15.59580 -15.48073 -15.23112 -14.81703 -14.54974 -14.43554 -14.31564 -14.26166 -13.77397 -13.68300 -13.57181 -13.52584 -13.43190 -13.30818 -12.64665 -12.58367 -12.48177 -12.43177 -12.18743 -12.17278 -12.13715 -11.99781 -11.77737 -11.62323 -11.32924 -11.25441 -11.03525 -10.60973 -10.23484 -9.81225 -9.78801 -9.63996 -8.92156 -4.88155 0.16747 0.27937 0.41501 0.50507 1.33606 1.43827 1.45860 1.63420 1.99834 2.31006 2.52822 2.55391 2.83196 3.13913 3.24466 3.41143 3.42551 3.50055 3.61841 3.62953 3.66584 3.85719 3.87549 3.91153 4.04358 4.09488 4.12822 4.14035 4.14558 4.21498 4.28205 4.30892 4.30984 4.36074 4.48745 4.57303 4.60914 4.64948 4.65666 4.66425 4.67767 4.70884 4.72993 4.87330 4.95853 5.00879 5.10596 5.12582 5.16070 5.25315 5.28281 5.37149 5.59183 5.59373 5.65075 5.66043 5.96142 6.10760 6.37084 6.49346 6.53112 7.09608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.077 3.923 4 C 0.086 3.914 5 O -0.313 6.313 6 C 0.034 3.966 7 C 0.515 3.485 8 O -0.570 6.570 9 N -0.704 5.704 10 C 0.148 3.852 11 C -0.040 4.040 12 C -0.072 4.072 13 C -0.119 4.119 14 C -0.123 4.123 15 C -0.133 4.133 16 C -0.131 4.131 17 C -0.123 4.123 18 C -0.144 4.144 19 C 0.053 3.947 20 H 0.121 0.879 21 F -0.224 7.224 22 C -0.140 4.140 23 C -0.160 4.160 24 C -0.111 4.111 25 C -0.115 4.115 26 C -0.085 4.085 27 O -0.550 6.550 28 Si 0.777 3.223 29 C -0.151 4.151 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.418 0.582 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.175 0.825 48 H 0.157 0.843 49 H 0.122 0.878 50 H 0.386 0.614 51 H -0.308 1.308 52 H -0.274 1.274 53 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 5.673 -0.865 7.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.031 3.969 4 C 0.041 3.959 5 O -0.227 6.227 6 C -0.044 4.044 7 C 0.301 3.699 8 O -0.448 6.448 9 N -0.359 5.359 10 C 0.025 3.975 11 C -0.040 4.040 12 C -0.072 4.072 13 C -0.137 4.137 14 C -0.141 4.141 15 C -0.151 4.151 16 C -0.149 4.149 17 C -0.141 4.141 18 C -0.181 4.181 19 C 0.018 3.982 20 H 0.139 0.861 21 F -0.204 7.204 22 C -0.178 4.178 23 C -0.178 4.178 24 C -0.129 4.129 25 C -0.116 4.116 26 C -0.193 4.193 27 O -0.359 6.359 28 Si 0.682 3.318 29 C -0.170 4.170 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.119 0.881 44 H 0.126 0.874 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.192 0.808 48 H 0.174 0.826 49 H 0.140 0.860 50 H 0.235 0.765 51 H -0.236 1.236 52 H -0.200 1.200 53 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.249 5.251 -0.930 6.819 hybrid contribution -0.330 -0.311 1.415 1.486 sum 3.919 4.940 0.484 6.324 Atomic orbital electron populations 1.23283 0.76833 1.05194 1.02091 1.86188 1.22968 1.26608 1.89080 1.18669 0.89907 0.85629 1.02681 1.18581 0.88186 0.86512 1.02665 1.86218 1.18130 1.29037 1.89275 1.22759 0.79421 0.95232 1.06946 1.20477 0.82737 0.90854 0.75862 1.90783 1.64012 1.40057 1.49962 1.45526 1.05111 1.10257 1.74974 1.21106 0.89140 0.84546 1.02738 1.20544 0.92976 0.97492 0.93019 1.19463 0.99295 0.95089 0.93374 1.21318 0.98158 0.94474 0.99732 1.21443 0.99319 1.00735 0.92616 1.21456 0.99500 0.95515 0.98605 1.21368 0.98477 0.95905 0.99139 1.21124 0.99963 1.00336 0.92638 1.23759 1.04344 0.96141 0.93892 1.23419 0.87303 0.98565 0.88951 0.86094 1.92787 1.56630 1.95427 1.75601 1.23687 1.02373 0.97696 0.94058 1.21369 1.02209 0.89356 1.04888 1.21040 0.92463 0.99076 1.00295 1.20109 0.94403 0.94706 1.02376 1.25311 1.02227 1.02244 0.89548 1.86574 1.37385 1.95593 1.16319 0.93970 0.77279 0.72371 0.88218 1.21023 1.00509 0.90535 1.04943 0.92008 0.91529 0.87112 0.86004 0.85169 0.74467 0.91612 0.90537 0.83733 0.84342 0.85200 0.85527 0.85969 0.88094 0.87443 0.88471 0.88846 0.80808 0.82559 0.86034 0.76465 1.23619 1.19981 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.81 113.37 1.11 1.16 16 2 O -0.33 -3.58 10.28 -79.57 -0.82 -4.40 16 3 C 0.08 0.59 6.70 22.57 0.15 0.74 16 4 C 0.09 0.44 6.70 22.57 0.15 0.59 16 5 O -0.31 -2.50 9.45 -66.99 -0.63 -3.13 16 6 C 0.03 -0.10 5.22 71.24 0.37 0.28 16 7 C 0.51 1.34 7.91 87.66 0.69 2.04 16 8 O -0.57 -8.35 16.50 15.99 0.26 -8.08 16 9 N -0.70 3.32 5.19 -463.06 -2.40 0.92 16 10 C 0.15 -0.49 4.84 86.38 0.42 -0.07 16 11 C -0.04 0.25 0.63 -52.40 -0.03 0.21 16 12 C -0.07 0.31 4.51 -19.87 -0.09 0.22 16 13 C -0.12 0.70 9.05 22.27 0.20 0.90 16 14 C -0.12 0.54 10.05 22.27 0.22 0.77 16 15 C -0.13 0.31 10.05 22.27 0.22 0.54 16 16 C -0.13 0.16 10.05 22.27 0.22 0.39 16 17 C -0.12 0.21 9.34 22.27 0.21 0.42 16 18 C -0.14 1.07 6.10 31.12 0.19 1.26 16 19 C 0.05 -0.19 5.32 31.21 0.17 -0.02 16 20 H 0.12 -0.68 7.61 -2.38 -0.02 -0.70 16 21 F -0.22 -0.81 17.41 44.97 0.78 -0.03 16 22 C -0.14 0.63 7.02 31.22 0.22 0.85 16 23 C -0.16 0.46 9.04 22.35 0.20 0.66 16 24 C -0.11 0.39 8.66 22.28 0.19 0.58 16 25 C -0.12 0.03 5.35 -19.86 -0.11 -0.07 16 26 C -0.09 0.14 2.80 71.23 0.20 0.34 16 27 O -0.55 -1.05 12.83 -148.98 -1.91 -2.96 16 28 Si 0.78 -3.32 29.88 68.60 2.05 -1.27 16 29 C -0.15 -0.51 8.67 22.35 0.19 -0.32 16 30 H 0.06 0.02 7.66 -2.39 -0.02 0.00 16 31 H 0.07 -0.04 7.66 -2.39 -0.02 -0.05 16 32 H 0.11 -0.04 8.14 -2.38 -0.02 -0.06 16 33 H 0.12 -1.09 7.65 -2.39 -0.02 -1.11 16 34 H 0.13 -1.36 7.67 -2.38 -0.02 -1.38 16 35 H 0.42 -4.52 8.23 -92.71 -0.76 -5.28 16 36 H 0.07 -0.02 7.97 -2.39 -0.02 -0.04 16 37 H 0.08 -0.16 7.31 -2.39 -0.02 -0.18 16 38 H 0.15 -1.49 6.41 -2.91 -0.02 -1.51 16 39 H 0.14 -1.09 8.06 -2.91 -0.02 -1.12 16 40 H 0.13 -0.62 8.06 -2.91 -0.02 -0.64 16 41 H 0.13 -0.39 8.06 -2.91 -0.02 -0.41 16 42 H 0.12 -0.33 8.06 -2.91 -0.02 -0.35 16 43 H 0.10 -1.02 7.95 -2.38 -0.02 -1.04 16 44 H 0.11 -0.80 6.79 -2.39 -0.02 -0.82 16 45 H 0.10 -0.27 8.09 -2.38 -0.02 -0.29 16 46 H 0.09 -0.52 8.10 -2.39 -0.02 -0.53 16 47 H 0.17 -1.91 6.30 -2.91 -0.02 -1.93 16 48 H 0.16 -1.37 4.83 -2.91 -0.01 -1.38 16 49 H 0.12 -0.34 7.96 -2.39 -0.02 -0.36 16 50 H 0.39 -1.43 8.70 -74.05 -0.64 -2.07 16 51 H -0.31 -1.30 7.11 99.48 0.71 -0.59 16 52 H -0.27 0.51 7.00 99.48 0.70 1.21 16 53 H 0.14 0.27 6.30 -2.91 -0.02 0.25 16 Total: 0.00 -29.92 437.04 2.04 -27.89 By element: Atomic # 1 Polarization: -19.97 SS G_CDS: -0.41 Total: -20.38 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 5.11 Total: 11.44 kcal Atomic # 7 Polarization: 3.32 SS G_CDS: -2.40 Total: 0.92 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -3.10 Total: -18.57 kcal Atomic # 9 Polarization: -0.81 SS G_CDS: 0.78 Total: -0.03 kcal Atomic # 14 Polarization: -3.32 SS G_CDS: 2.05 Total: -1.27 kcal Total: -29.92 2.04 -27.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_60476.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.451 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds