Wall clock time and date at job start Sat Mar 6 2021 21:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35963 * 116.99853 * 2 1 4 4 C 1.39454 * 120.11665 * 180.02562 * 3 2 1 5 5 O 1.34770 * 133.24854 * 0.02562 * 4 3 2 6 6 C 1.34925 * 110.84432 * 179.97438 * 5 4 3 7 7 C 1.46993 * 125.13958 * 179.97438 * 6 5 4 8 8 O 1.21649 * 120.00029 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99829 * 0.02749 * 7 6 5 10 10 C 1.46502 * 119.99761 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46988 * 179.03927 * 10 9 7 12 12 C 1.50701 * 112.85292 * 66.13884 * 11 10 9 13 13 C 1.38234 * 120.00134 * 245.82947 * 12 11 10 14 14 C 1.38235 * 119.99468 * 179.76692 * 13 12 11 15 15 C 1.38229 * 120.00555 * 0.50473 * 14 13 12 16 16 C 1.38243 * 119.99568 * 359.74980 * 15 14 13 17 17 C 1.38226 * 120.00197 * 359.97438 * 16 15 14 18 18 C 1.53782 * 113.61091 * 294.94391 * 11 10 9 19 19 C 1.53782 * 87.08208 * 270.88374 * 18 11 10 20 20 H 1.08998 * 113.61425 * 89.11347 * 19 18 11 21 21 F 1.39895 * 113.61676 * 219.93802 * 19 18 11 22 22 C 1.53782 * 87.08113 * 334.56919 * 19 18 11 23 23 C 1.35806 * 109.72147 * 0.02562 * 6 5 4 24 24 C 1.40613 * 119.13070 * 180.02562 * 4 3 2 25 25 C 1.39780 * 120.12107 * 359.97438 * 24 4 3 26 26 C 1.50701 * 120.09111 * 179.97438 * 25 24 4 27 27 O 1.42892 * 109.47316 * 75.00176 * 26 25 24 28 28 Si 1.86296 * 109.46992 * 195.00561 * 26 25 24 29 29 C 1.36627 * 119.81509 * 0.02562 * 25 24 4 30 30 C 1.38256 * 120.12318 * 359.72524 * 3 2 1 31 31 H 1.08999 * 109.47635 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47623 * 59.99956 * 1 2 3 33 33 H 1.09005 * 109.47097 * 299.99336 * 1 2 3 34 34 H 0.96997 * 120.00551 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47014 * 299.03562 * 10 9 7 36 36 H 1.08997 * 109.47717 * 59.03716 * 10 9 7 37 37 H 1.07998 * 119.99793 * 359.97438 * 13 12 11 38 38 H 1.08007 * 119.99407 * 180.23186 * 14 13 12 39 39 H 1.07995 * 120.00317 * 179.72705 * 15 14 13 40 40 H 1.08006 * 119.99268 * 179.97438 * 16 15 14 41 41 H 1.08004 * 119.99741 * 179.97438 * 17 16 15 42 42 H 1.08991 * 113.61878 * 25.43191 * 18 11 10 43 43 H 1.09008 * 113.61343 * 156.33787 * 18 11 10 44 44 H 1.09003 * 113.61673 * 270.88066 * 22 19 18 45 45 H 1.09004 * 113.61539 * 139.97815 * 22 19 18 46 46 H 1.08001 * 126.95879 * 180.02562 * 23 6 5 47 47 H 1.09000 * 109.47089 * 314.99774 * 26 25 24 48 48 H 0.96701 * 113.99973 * 59.99707 * 27 26 25 49 49 H 1.48507 * 110.00328 * 180.02562 * 28 26 25 50 50 H 1.48507 * 109.99789 * 301.31730 * 28 26 25 51 51 H 1.08001 * 119.75460 * 179.97438 * 29 25 24 52 52 H 1.08007 * 119.65900 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4387 1.2873 -0.0005 5 8 4.4141 0.3573 -0.0016 6 6 5.6317 0.9387 -0.0023 7 6 6.9131 0.2185 -0.0029 8 8 7.9595 0.8388 -0.0030 9 7 6.9286 -1.1292 -0.0034 10 6 8.2057 -1.8470 -0.0034 11 6 7.9436 -3.3542 0.0202 12 6 7.2797 -3.8526 -1.2375 13 6 5.9946 -4.3593 -1.1865 14 6 5.3839 -4.8120 -2.3411 15 6 6.0620 -4.7676 -3.5448 16 6 7.3491 -4.2657 -3.5948 17 6 7.9578 -3.8077 -2.4414 18 6 7.2630 -3.8408 1.3105 19 6 8.6745 -4.0233 1.8929 20 1 9.0610 -3.1325 2.3880 21 9 8.8160 -5.1798 2.6673 22 6 9.1658 -4.1854 0.4448 23 6 5.4944 2.2898 -0.0011 24 6 4.0554 2.5510 0.0000 25 6 3.2764 3.7116 0.0006 26 6 3.9381 5.0656 0.0017 27 8 4.4609 5.3415 -1.2992 28 14 2.6862 6.3681 0.4570 29 6 1.9136 3.6151 0.0011 30 6 1.2957 2.3726 -0.0057 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 0.5138 0.8901 34 1 6.0943 -1.6239 -0.0029 35 1 8.7670 -1.5899 -0.9017 36 1 8.7815 -1.5645 0.8779 37 1 5.4666 -4.3984 -0.2452 38 1 4.3784 -5.2044 -2.3018 39 1 5.5865 -5.1253 -4.4460 40 1 7.8791 -4.2314 -4.5353 41 1 8.9635 -3.4160 -2.4805 42 1 6.6793 -3.0701 1.8137 43 1 6.7162 -4.7761 1.1897 44 1 9.1394 -5.2148 0.0873 45 1 10.1183 -3.6927 0.2491 46 1 6.2874 3.0230 -0.0017 47 1 4.7502 5.0726 0.7287 48 1 3.7924 5.3512 -1.9978 49 1 3.3261 7.7082 0.4611 50 1 1.5579 6.3475 -0.5084 51 1 1.3127 4.5125 0.0019 52 1 0.2173 2.3119 -0.0106 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_6672420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:30:24 Heat of formation + Delta-G solvation = -53.431397 kcal Electronic energy + Delta-G solvation = -39548.691805 eV Core-core repulsion = 34362.469594 eV Total energy + Delta-G solvation = -5186.222211 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.156 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -48.59576 -43.78331 -41.72077 -40.80705 -40.25657 -39.13847 -38.80619 -37.12591 -35.61215 -33.67888 -32.15710 -31.94319 -31.88589 -31.16512 -29.10840 -28.24065 -27.14695 -26.31450 -25.44504 -24.33963 -24.02722 -23.25694 -22.54411 -22.00687 -21.76950 -20.35503 -19.52922 -19.03455 -18.62409 -18.38553 -17.88760 -17.81068 -17.51335 -17.17385 -16.99248 -16.68611 -16.55658 -16.25086 -16.15366 -15.98334 -15.91358 -15.81965 -15.53630 -15.39975 -14.80791 -14.63275 -14.59433 -14.54484 -14.49722 -14.31873 -14.21236 -13.69740 -13.57734 -13.50049 -13.44986 -13.40338 -13.26594 -12.57688 -12.48530 -12.47532 -12.27128 -12.23375 -12.13486 -11.83331 -11.70066 -11.66769 -11.38013 -11.28109 -11.04539 -10.61497 -10.41645 -9.86754 -9.84764 -9.68713 -9.02814 -4.89079 -0.69745 0.07929 0.36751 0.45546 0.58999 1.14785 1.30151 1.59411 1.81074 1.85696 1.98021 2.12160 2.37458 2.78039 3.07951 3.11582 3.23907 3.37342 3.39645 3.53029 3.54206 3.57026 3.64294 3.79959 3.84235 3.85441 3.96321 4.07275 4.09080 4.15243 4.17140 4.25306 4.31791 4.41137 4.42649 4.43003 4.48348 4.54333 4.61302 4.62852 4.64484 4.69834 4.75707 4.81711 4.82031 4.85189 4.91374 5.02855 5.03634 5.06059 5.11079 5.20081 5.24481 5.33139 5.53950 5.55746 5.59489 5.60310 6.05530 6.12626 6.25768 6.49351 6.73919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.138 3.862 4 C 0.022 3.978 5 O -0.181 6.181 6 C -0.034 4.034 7 C 0.603 3.397 8 O -0.542 6.542 9 N -0.699 5.699 10 C 0.143 3.857 11 C -0.044 4.044 12 C -0.074 4.074 13 C -0.124 4.124 14 C -0.127 4.127 15 C -0.133 4.133 16 C -0.129 4.129 17 C -0.120 4.120 18 C -0.151 4.151 19 C 0.057 3.943 20 H 0.127 0.873 21 F -0.223 7.223 22 C -0.133 4.133 23 C -0.111 4.111 24 C -0.096 4.096 25 C -0.100 4.100 26 C -0.090 4.090 27 O -0.548 6.548 28 Si 0.782 3.218 29 C -0.089 4.089 30 C -0.166 4.166 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.414 0.586 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.172 0.828 47 H 0.115 0.885 48 H 0.386 0.614 49 H -0.305 1.305 50 H -0.262 1.262 51 H 0.165 0.835 52 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.850 -0.472 0.854 7.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.092 3.908 4 C -0.027 4.027 5 O -0.083 6.083 6 C -0.084 4.084 7 C 0.389 3.611 8 O -0.421 6.421 9 N -0.350 5.350 10 C 0.021 3.979 11 C -0.044 4.044 12 C -0.074 4.074 13 C -0.142 4.142 14 C -0.145 4.145 15 C -0.151 4.151 16 C -0.147 4.147 17 C -0.138 4.138 18 C -0.188 4.188 19 C 0.022 3.978 20 H 0.144 0.856 21 F -0.203 7.203 22 C -0.171 4.171 23 C -0.132 4.132 24 C -0.097 4.097 25 C -0.100 4.100 26 C -0.197 4.197 27 O -0.356 6.356 28 Si 0.685 3.315 29 C -0.106 4.106 30 C -0.184 4.184 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.251 0.749 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.110 0.890 43 H 0.122 0.878 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.190 0.810 47 H 0.133 0.867 48 H 0.235 0.765 49 H -0.233 1.233 50 H -0.188 1.188 51 H 0.182 0.818 52 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.908 0.121 0.953 6.975 hybrid contribution -0.087 -0.558 -1.390 1.501 sum -6.995 -0.437 -0.438 7.023 Atomic orbital electron populations 1.23484 0.75339 1.06014 1.03153 1.86145 1.24288 1.25820 1.88427 1.17981 0.86105 0.86841 0.99910 1.19212 0.88235 0.87120 1.08087 1.84014 1.12729 1.35072 1.76486 1.21929 0.84031 0.92740 1.09724 1.16596 0.85069 0.82495 0.76932 1.90900 1.31239 1.68158 1.51811 1.45730 1.11284 1.04917 1.73024 1.21338 0.84643 0.88059 1.03897 1.20585 0.98048 0.93267 0.92503 1.19498 0.94537 0.99619 0.93762 1.21290 0.94690 0.99043 0.99188 1.21418 1.00681 0.99628 0.92748 1.21460 0.95243 0.99649 0.98711 1.21410 0.95653 0.98688 0.98966 1.21168 1.00541 0.99902 0.92209 1.23782 0.96745 1.03689 0.94617 1.23351 0.98513 0.85821 0.90141 0.85570 1.92788 1.96707 1.52927 1.77927 1.23610 0.98209 1.01637 0.93690 1.22852 0.95400 0.94377 1.00584 1.19574 0.92326 0.92775 1.04996 1.19551 0.93456 0.93882 1.03158 1.25384 1.07743 0.98612 0.87960 1.86606 1.38950 1.92763 1.17269 0.93890 0.75400 0.73453 0.88720 1.20884 0.92937 0.98812 0.97991 1.21372 1.01801 0.89604 1.05660 0.86648 0.90879 0.90439 0.74920 0.90266 0.89206 0.84668 0.84755 0.84993 0.84967 0.85135 0.89000 0.87782 0.88388 0.87992 0.81019 0.86665 0.76461 1.23343 1.18830 0.81762 0.80333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.72 10.50 -93.13 -0.98 -1.70 16 3 C 0.14 0.38 6.70 22.57 0.15 0.53 16 4 C 0.02 0.15 7.35 23.14 0.17 0.32 16 5 O -0.18 -1.48 10.28 -13.31 -0.14 -1.61 16 6 C -0.03 -0.27 7.07 24.00 0.17 -0.10 16 7 C 0.60 4.59 7.80 86.54 0.67 5.26 16 8 O -0.54 -7.12 16.83 -4.18 -0.07 -7.19 16 9 N -0.70 -1.17 5.15 -466.79 -2.41 -3.58 16 10 C 0.14 -0.17 4.85 86.38 0.42 0.25 16 11 C -0.04 0.14 0.63 -52.40 -0.03 0.11 16 12 C -0.07 0.04 4.61 -19.86 -0.09 -0.06 16 13 C -0.12 0.03 9.05 22.27 0.20 0.23 16 14 C -0.13 -0.08 10.05 22.27 0.22 0.15 16 15 C -0.13 -0.15 10.05 22.27 0.22 0.07 16 16 C -0.13 -0.16 10.05 22.27 0.22 0.07 16 17 C -0.12 -0.07 9.33 22.27 0.21 0.14 16 18 C -0.15 0.53 6.02 31.12 0.19 0.71 16 19 C 0.06 -0.12 5.31 31.12 0.17 0.05 16 20 H 0.13 -0.64 7.61 -2.39 -0.02 -0.66 16 21 F -0.22 -1.09 17.41 44.97 0.78 -0.31 16 22 C -0.13 0.47 7.00 31.12 0.22 0.69 16 23 C -0.11 -0.87 10.68 23.79 0.25 -0.62 16 24 C -0.10 -0.57 6.16 -20.24 -0.12 -0.70 16 25 C -0.10 -0.10 5.26 -19.87 -0.10 -0.20 16 26 C -0.09 0.00 2.70 71.24 0.19 0.20 16 27 O -0.55 -1.89 12.88 -148.98 -1.92 -3.81 16 28 Si 0.78 -3.15 30.25 68.60 2.08 -1.08 16 29 C -0.09 0.31 8.62 22.02 0.19 0.49 16 30 C -0.17 0.56 9.03 22.40 0.20 0.76 16 31 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 32 H 0.07 -0.72 7.65 -2.39 -0.02 -0.74 16 33 H 0.08 -0.81 7.67 -2.38 -0.02 -0.83 16 34 H 0.41 -0.03 7.92 -92.71 -0.73 -0.76 16 35 H 0.08 0.01 7.95 -2.39 -0.02 -0.01 16 36 H 0.09 -0.21 7.31 -2.39 -0.02 -0.22 16 37 H 0.14 -0.43 6.41 -2.91 -0.02 -0.45 16 38 H 0.13 -0.34 8.06 -2.91 -0.02 -0.36 16 39 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 40 H 0.13 -0.21 8.06 -2.91 -0.02 -0.24 16 41 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 42 H 0.09 -0.42 7.89 -2.39 -0.02 -0.44 16 43 H 0.10 -0.31 6.79 -2.38 -0.02 -0.33 16 44 H 0.10 -0.18 8.10 -2.39 -0.02 -0.20 16 45 H 0.10 -0.62 8.10 -2.39 -0.02 -0.64 16 46 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 47 H 0.12 0.00 7.96 -2.39 -0.02 -0.02 16 48 H 0.39 -1.12 8.70 -74.06 -0.64 -1.77 16 49 H -0.31 -1.37 7.11 99.48 0.71 -0.66 16 50 H -0.26 0.84 6.69 99.48 0.67 1.51 16 51 H 0.17 -1.42 4.81 -2.91 -0.01 -1.43 16 52 H 0.18 -1.84 6.26 -2.91 -0.02 -1.86 16 Total: 0.00 -22.28 434.78 1.80 -20.48 By element: Atomic # 1 Polarization: -10.19 SS G_CDS: -0.38 Total: -10.57 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 4.83 Total: 9.36 kcal Atomic # 7 Polarization: -1.17 SS G_CDS: -2.41 Total: -3.58 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -3.10 Total: -14.31 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.78 Total: -0.31 kcal Atomic # 14 Polarization: -3.15 SS G_CDS: 2.08 Total: -1.08 kcal Total: -22.28 1.80 -20.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_6672420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.955 kcal (2) G-P(sol) polarization free energy of solvation -22.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds