Wall clock time and date at job start Sat Mar 6 2021 21:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86295 * 109.47160 * 2 1 4 4 C 1.50700 * 109.46936 * 240.00287 * 2 1 3 5 5 C 1.32780 * 124.71025 * 300.31267 * 4 2 1 6 6 C 1.44424 * 113.07981 * 180.14627 * 5 4 2 7 7 C 1.47195 * 123.45721 * 179.81158 * 6 5 4 8 8 O 1.21636 * 120.00033 * 359.72822 * 7 6 5 9 9 N 1.34780 * 119.99798 * 179.73212 * 7 6 5 10 10 C 1.46500 * 119.99631 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46766 * 184.19371 * 10 9 7 12 12 C 1.50705 * 112.84912 * 294.89159 * 11 10 9 13 13 C 1.38227 * 120.00153 * 113.63704 * 12 11 10 14 14 C 1.38235 * 120.00378 * 179.78797 * 13 12 11 15 15 C 1.38239 * 119.99399 * 0.45595 * 14 13 12 16 16 C 1.38238 * 120.00196 * 359.77916 * 15 14 13 17 17 C 1.38233 * 119.99523 * 293.90944 * 12 11 10 18 18 C 1.53777 * 113.61118 * 163.69377 * 11 10 9 19 19 C 1.54052 * 86.98540 * 270.83736 * 18 11 10 20 20 H 1.09004 * 113.68522 * 89.13203 * 19 18 11 21 21 F 1.39902 * 113.61963 * 220.02030 * 19 18 11 22 22 C 1.53778 * 87.07750 * 334.56957 * 19 18 11 23 23 C 1.36005 * 113.07924 * 359.54046 * 6 5 4 24 24 S 1.70439 * 110.81984 * 0.24713 * 23 6 5 25 25 H 0.96703 * 114.00104 * 60.00090 * 1 2 3 26 26 H 1.09001 * 109.46898 * 120.00276 * 2 1 3 27 27 H 1.48504 * 110.00380 * 298.68155 * 3 2 1 28 28 H 1.48500 * 110.00069 * 60.00195 * 3 2 1 29 29 H 1.07997 * 123.45751 * 359.93232 * 5 4 2 30 30 H 0.97001 * 120.00044 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.47028 * 64.19757 * 10 9 7 32 32 H 1.08996 * 109.47075 * 304.19518 * 10 9 7 33 33 H 1.08009 * 119.99958 * 359.97438 * 13 12 11 34 34 H 1.07993 * 120.00293 * 180.25624 * 14 13 12 35 35 H 1.08003 * 119.99776 * 179.79207 * 15 14 13 36 36 H 1.08002 * 119.99936 * 179.97438 * 16 15 14 37 37 H 1.08002 * 120.00374 * 359.97438 * 17 12 11 38 38 H 1.09002 * 113.61506 * 25.43331 * 18 11 10 39 39 H 1.09000 * 113.61371 * 156.33759 * 18 11 10 40 40 H 1.08997 * 113.61685 * 270.88049 * 22 19 18 41 41 H 1.09003 * 113.61415 * 139.97024 * 22 19 18 42 42 H 1.07998 * 124.59203 * 180.24466 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6639 -1.9746 -1.5358 6 6 2.2767 -2.4002 -2.7724 7 6 2.1334 -3.7574 -3.3240 8 8 1.4748 -4.5892 -2.7293 9 7 2.7321 -4.0782 -4.4882 10 6 2.5900 -5.4291 -5.0369 11 6 3.4451 -5.5594 -6.2990 12 6 2.9741 -4.6685 -7.4196 13 6 3.7681 -3.6226 -7.8512 14 6 3.3381 -2.8080 -8.8820 15 6 2.1098 -3.0338 -9.4748 16 6 1.3137 -4.0769 -9.0399 17 6 1.7457 -4.8940 -8.0119 18 6 3.6888 -7.0152 -6.7303 19 6 4.9346 -6.9895 -5.8245 20 1 4.7340 -7.2876 -4.7954 21 9 6.0411 -7.6457 -6.3743 22 6 4.9566 -5.4658 -6.0313 23 6 2.9948 -1.4166 -3.3777 24 16 2.9440 0.0208 -2.4633 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5139 0.8900 27 1 1.5879 2.4586 -1.2242 28 1 1.5615 2.4678 1.2085 29 1 1.0538 -2.6194 -0.9207 30 1 3.2570 -3.4147 -4.9626 31 1 1.5446 -5.6120 -5.2859 32 1 2.9203 -6.1583 -4.2972 33 1 4.7258 -3.4435 -7.3851 34 1 3.9602 -1.9934 -9.2220 35 1 1.7723 -2.3954 -10.2779 36 1 0.3539 -4.2530 -9.5027 37 1 1.1236 -5.7088 -7.6720 38 1 2.9159 -7.7058 -6.3927 39 1 3.9214 -7.1237 -7.7896 40 1 5.5351 -5.1514 -6.8999 41 1 5.2064 -4.9063 -5.1298 42 1 3.5255 -1.5308 -4.3114 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13458982_6894386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:30:32 Heat of formation + Delta-G solvation = -26.585209 kcal Electronic energy + Delta-G solvation = -27725.056094 eV Core-core repulsion = 23678.504551 eV Total energy + Delta-G solvation = -4046.551543 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.58511 -41.72522 -40.62087 -38.98393 -38.67495 -37.19108 -35.44873 -32.18556 -31.85927 -31.79822 -28.76237 -27.13802 -26.97006 -25.66984 -24.57728 -23.22862 -22.52985 -22.04071 -20.72918 -19.85634 -18.95823 -18.38855 -18.11312 -17.75028 -17.42406 -16.79775 -16.58386 -16.46186 -16.21019 -16.02463 -15.83003 -15.52212 -15.48119 -15.13998 -14.69930 -14.55629 -14.43025 -14.28492 -14.05097 -13.75236 -13.62130 -13.59777 -13.48018 -13.31983 -12.67154 -12.49967 -12.45072 -12.42753 -12.20855 -11.87076 -11.79778 -11.34358 -11.27426 -11.09176 -10.77887 -10.28826 -9.97997 -9.83480 -9.66015 -9.44701 -5.05057 -0.34661 0.39105 0.39552 0.48233 0.69961 0.81225 1.22693 1.56268 1.90701 2.00242 2.24756 2.81064 3.12053 3.22947 3.30186 3.41762 3.51987 3.58886 3.61895 3.85910 3.90651 3.97175 4.10782 4.12009 4.19303 4.27560 4.29533 4.46868 4.50431 4.59880 4.63616 4.65453 4.68653 4.70789 4.71139 4.84733 4.93790 5.00019 5.08484 5.13836 5.16043 5.26275 5.27430 5.57023 5.62924 5.63720 6.08660 6.39649 6.39965 7.09229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.046 4.046 3 Si 0.730 3.270 4 C -0.246 4.246 5 C -0.075 4.075 6 C -0.182 4.182 7 C 0.576 3.424 8 O -0.582 6.582 9 N -0.706 5.706 10 C 0.147 3.853 11 C -0.041 4.041 12 C -0.073 4.073 13 C -0.122 4.122 14 C -0.123 4.123 15 C -0.132 4.132 16 C -0.130 4.130 17 C -0.123 4.123 18 C -0.138 4.138 19 C 0.055 3.945 20 H 0.122 0.878 21 F -0.223 7.223 22 C -0.146 4.146 23 C -0.192 4.192 24 S 0.253 5.747 25 H 0.388 0.612 26 H 0.130 0.870 27 H -0.252 1.252 28 H -0.277 1.277 29 H 0.133 0.867 30 H 0.412 0.588 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.597 5.267 -3.572 7.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.157 4.157 3 Si 0.631 3.369 4 C -0.362 4.362 5 C -0.105 4.105 6 C -0.200 4.200 7 C 0.363 3.637 8 O -0.463 6.463 9 N -0.357 5.357 10 C 0.024 3.976 11 C -0.042 4.042 12 C -0.073 4.073 13 C -0.140 4.140 14 C -0.141 4.141 15 C -0.150 4.150 16 C -0.148 4.148 17 C -0.141 4.141 18 C -0.176 4.176 19 C 0.019 3.981 20 H 0.139 0.861 21 F -0.204 7.204 22 C -0.183 4.183 23 C -0.330 4.330 24 S 0.520 5.480 25 H 0.238 0.762 26 H 0.148 0.852 27 H -0.177 1.177 28 H -0.202 1.202 29 H 0.150 0.850 30 H 0.249 0.751 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.115 0.885 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.665 6.606 -2.836 8.570 hybrid contribution -1.806 -1.809 -0.627 2.632 sum 2.859 4.798 -3.462 6.571 Atomic orbital electron populations 1.86612 1.18207 1.80374 1.50089 1.24733 0.83276 1.11332 0.96360 0.94475 0.90272 0.72203 0.79965 1.24839 1.08696 0.98761 1.03939 1.20967 0.99118 0.95034 0.95365 1.20084 1.06598 0.94690 0.98598 1.17864 0.78410 0.86861 0.80531 1.90801 1.42435 1.51849 1.61240 1.45573 1.53017 1.14514 1.22644 1.21136 0.99643 0.83787 0.93070 1.20559 0.95132 0.95791 0.92679 1.19477 0.94783 0.96313 0.96709 1.21315 1.00335 0.94702 0.97609 1.21442 0.96376 0.99992 0.96273 1.21463 0.95109 0.98019 1.00438 1.21382 1.00452 0.95701 0.97301 1.21132 0.96187 0.99984 0.96753 1.23675 0.97621 0.95031 1.01303 1.23403 0.83003 0.92978 0.98710 0.86060 1.92788 1.56625 1.83301 1.87670 1.23761 0.94528 0.95334 1.04673 1.26142 1.02819 0.98344 1.05702 1.82939 1.44613 1.09765 1.10703 0.76238 0.85206 1.17660 1.20226 0.84966 0.75111 0.91507 0.90410 0.83893 0.84281 0.85087 0.85405 0.85879 0.88691 0.88387 0.87420 0.88458 0.78312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.49 12.84 -148.98 -1.91 -3.41 16 2 C -0.05 0.05 2.95 71.24 0.21 0.26 16 3 Si 0.73 -2.82 30.91 68.60 2.12 -0.70 16 4 C -0.25 0.13 5.69 24.51 0.14 0.27 16 5 C -0.08 -0.33 9.91 22.67 0.22 -0.10 16 6 C -0.18 -0.41 5.98 -19.87 -0.12 -0.53 16 7 C 0.58 3.31 7.79 86.60 0.67 3.98 16 8 O -0.58 -8.67 16.80 -4.14 -0.07 -8.74 16 9 N -0.71 1.07 5.16 -466.57 -2.41 -1.34 16 10 C 0.15 -0.25 4.84 86.38 0.42 0.16 16 11 C -0.04 0.20 0.63 -52.40 -0.03 0.17 16 12 C -0.07 0.23 4.51 -19.87 -0.09 0.14 16 13 C -0.12 0.58 9.05 22.27 0.20 0.78 16 14 C -0.12 0.45 10.05 22.27 0.22 0.68 16 15 C -0.13 0.24 10.05 22.27 0.22 0.46 16 16 C -0.13 0.08 10.05 22.27 0.22 0.31 16 17 C -0.12 0.12 9.34 22.27 0.21 0.32 16 18 C -0.14 0.53 7.01 31.21 0.22 0.75 16 19 C 0.05 -0.15 5.32 31.21 0.17 0.02 16 20 H 0.12 -0.59 7.61 -2.38 -0.02 -0.61 16 21 F -0.22 -0.92 17.41 44.97 0.78 -0.14 16 22 C -0.15 0.88 6.09 31.12 0.19 1.07 16 23 C -0.19 0.93 10.38 67.30 0.70 1.63 16 24 S 0.25 -1.47 20.18 -56.49 -1.14 -2.61 16 25 H 0.39 -1.29 8.70 -74.06 -0.64 -1.94 16 26 H 0.13 -0.27 7.96 -2.39 -0.02 -0.29 16 27 H -0.25 0.43 7.11 99.48 0.71 1.14 16 28 H -0.28 -0.90 7.11 99.48 0.71 -0.19 16 29 H 0.13 1.11 8.06 -2.91 -0.02 1.09 16 30 H 0.41 -2.77 6.72 -92.71 -0.62 -3.39 16 31 H 0.07 0.06 7.97 -2.39 -0.02 0.04 16 32 H 0.08 -0.07 7.31 -2.39 -0.02 -0.09 16 33 H 0.14 -1.30 6.44 -2.91 -0.02 -1.32 16 34 H 0.14 -1.02 8.06 -2.91 -0.02 -1.04 16 35 H 0.13 -0.58 8.06 -2.91 -0.02 -0.60 16 36 H 0.13 -0.34 8.06 -2.91 -0.02 -0.36 16 37 H 0.12 -0.25 8.06 -2.91 -0.02 -0.28 16 38 H 0.09 -0.49 8.10 -2.39 -0.02 -0.51 16 39 H 0.10 -0.23 8.09 -2.39 -0.02 -0.25 16 40 H 0.11 -0.68 6.83 -2.39 -0.02 -0.70 16 41 H 0.10 -0.79 7.95 -2.39 -0.02 -0.81 16 42 H 0.20 -2.32 7.01 -2.91 -0.02 -2.35 16 Total: 0.00 -20.00 368.12 0.99 -19.01 By element: Atomic # 1 Polarization: -12.31 SS G_CDS: -0.16 Total: -12.46 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 3.78 Total: 10.39 kcal Atomic # 7 Polarization: 1.07 SS G_CDS: -2.41 Total: -1.34 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -1.98 Total: -12.15 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.78 Total: -0.14 kcal Atomic # 14 Polarization: -2.82 SS G_CDS: 2.12 Total: -0.70 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -1.14 Total: -2.61 kcal Total: -20.00 0.99 -19.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13458982_6894386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.574 kcal (2) G-P(sol) polarization free energy of solvation -20.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds