Wall clock time and date at job start Sat Mar 6 2021 20:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86306 * 109.47002 * 2 1 4 4 C 1.50697 * 109.48008 * 120.00540 * 2 1 3 5 5 C 1.38418 * 119.89256 * 245.00637 * 4 2 1 6 6 C 1.38243 * 120.34235 * 180.02562 * 5 4 2 7 7 C 1.38277 * 120.11578 * 359.97438 * 6 5 4 8 8 F 1.35101 * 120.10893 * 180.02562 * 7 6 5 9 9 C 1.39872 * 119.78044 * 0.02562 * 7 6 5 10 10 C 1.47691 * 120.16607 * 180.02562 * 9 7 6 11 11 O 1.21574 * 120.00069 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99749 * 180.02562 * 10 9 7 13 13 C 1.46501 * 119.99841 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47585 * 34.99589 * 13 12 10 15 15 C 1.53001 * 109.47296 * 154.99903 * 13 12 10 16 16 C 1.52998 * 109.47405 * 180.02562 * 15 13 12 17 17 C 1.53010 * 109.46814 * 300.00020 * 16 15 13 18 18 H 1.08993 * 109.46746 * 299.99667 * 17 16 15 19 19 C 1.52998 * 109.46814 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.46788 * 174.99892 * 19 17 16 21 21 O 1.42903 * 109.47256 * 180.02562 * 20 19 17 22 22 C 1.53001 * 109.47151 * 59.99824 * 17 16 15 23 23 C 1.52999 * 109.46912 * 274.99567 * 13 12 10 24 24 C 1.37899 * 119.88798 * 65.29474 * 4 2 1 25 25 H 0.96704 * 113.99381 * 299.99156 * 1 2 3 26 26 H 1.09006 * 109.47152 * 240.00709 * 2 1 3 27 27 H 1.48499 * 109.99774 * 178.68622 * 3 2 1 28 28 H 1.48497 * 109.99964 * 300.00741 * 3 2 1 29 29 H 1.08001 * 119.82405 * 359.97438 * 5 4 2 30 30 H 1.07993 * 119.94410 * 180.02562 * 6 5 4 31 31 H 0.96999 * 120.00185 * 359.97438 * 12 10 9 32 32 H 1.08993 * 109.47423 * 59.99643 * 15 13 12 33 33 H 1.09006 * 109.46847 * 299.99869 * 15 13 12 34 34 H 1.08998 * 109.47560 * 179.97438 * 16 15 13 35 35 H 1.09006 * 109.47460 * 59.99293 * 16 15 13 36 36 H 1.08997 * 109.47384 * 54.99736 * 19 17 16 37 37 H 1.08997 * 109.47329 * 294.99479 * 19 17 16 38 38 H 1.08997 * 109.47286 * 59.99783 * 20 19 17 39 39 H 1.09008 * 109.47201 * 299.99563 * 20 19 17 40 40 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.46869 * 60.00054 * 22 17 16 42 42 H 1.08996 * 109.46905 * 180.02562 * 22 17 16 43 43 H 1.08997 * 109.47548 * 299.99833 * 23 13 12 44 44 H 1.09004 * 109.47368 * 60.00622 * 23 13 12 45 45 H 1.07994 * 120.06703 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 1.2303 5 6 2.6396 -0.0093 2.1910 6 6 3.1054 -0.6518 3.3229 7 6 2.8656 -2.0017 3.5026 8 9 3.3204 -2.6294 4.6091 9 6 2.1506 -2.7152 2.5350 10 6 1.8892 -4.1571 2.7185 11 8 2.2961 -4.7270 3.7123 12 7 1.2004 -4.8414 1.7838 13 6 0.9405 -6.2716 1.9661 14 1 0.7829 -6.4803 3.0242 15 6 -0.3087 -6.6677 1.1765 16 6 -0.5804 -8.1612 1.3674 17 6 0.6187 -8.9664 0.8625 18 1 0.7765 -8.7581 -0.1957 19 6 0.3472 -10.4598 1.0539 20 6 1.4897 -11.2690 0.4367 21 8 1.2359 -12.6640 0.6149 22 6 1.8679 -8.5702 1.6520 23 6 2.1397 -7.0762 1.4607 24 6 1.6896 -2.0584 1.3924 25 1 -0.3932 0.4416 0.7652 26 1 1.7923 -0.5137 -0.8901 27 1 3.5345 1.7703 0.0320 28 1 1.5613 2.4680 -1.2084 29 1 2.8298 1.0451 2.0551 30 1 3.6567 -0.0984 4.0685 31 1 0.8760 -4.3867 0.9907 32 1 -0.1511 -6.4591 0.1184 33 1 -1.1630 -6.0944 1.5366 34 1 -1.4706 -8.4434 0.8053 35 1 -0.7382 -8.3696 2.4257 36 1 -0.5906 -10.7242 0.5654 37 1 0.2779 -10.6830 2.1186 38 1 2.4275 -11.0046 0.9252 39 1 1.5590 -11.0459 -0.6281 40 1 1.9213 -13.2386 0.2474 41 1 1.7101 -8.7785 2.7103 42 1 2.7222 -9.1434 1.2920 43 1 2.2973 -6.8676 0.4025 44 1 3.0297 -6.7941 2.0232 45 1 1.1413 -2.6041 0.6389 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13461142_12335834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:06:02 Heat of formation + Delta-G solvation = -151.667078 kcal Electronic energy + Delta-G solvation = -27554.065978 eV Core-core repulsion = 23451.622982 eV Total energy + Delta-G solvation = -4102.442995 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.86171 -41.47313 -40.42587 -39.40884 -37.79279 -37.56442 -35.72638 -33.45476 -32.44930 -32.08941 -31.80390 -28.56280 -26.75219 -25.58931 -24.43835 -23.76516 -22.96349 -21.74827 -21.50892 -20.86807 -19.28170 -18.37973 -18.34514 -18.25409 -17.58555 -16.86761 -16.83752 -16.49270 -16.36303 -16.01470 -15.83123 -15.72526 -15.42309 -15.27631 -15.06415 -14.83873 -14.58787 -14.46507 -14.35077 -13.81071 -13.74259 -13.51169 -13.27192 -13.19155 -12.94035 -12.85675 -12.29979 -12.23003 -12.18938 -12.01999 -11.96718 -11.76375 -11.40055 -11.22410 -10.96305 -10.83957 -10.59767 -10.43280 -10.07440 -9.86322 -5.19344 -0.52854 -0.12720 1.10167 1.48121 1.65997 1.83644 1.98414 2.47598 3.00123 3.16362 3.20728 3.34793 3.42456 3.48687 3.59471 3.64861 3.82018 3.90817 3.94213 3.99799 4.10122 4.21292 4.24746 4.27039 4.36608 4.42681 4.43538 4.47551 4.49555 4.55364 4.63338 4.69376 4.74501 4.83311 4.88434 4.95807 4.96326 5.01650 5.08560 5.13692 5.14327 5.17366 5.31333 5.41258 5.47415 5.52247 6.37721 6.39159 6.67932 7.14591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.066 4.066 3 Si 0.686 3.314 4 C -0.141 4.141 5 C -0.059 4.059 6 C -0.157 4.157 7 C 0.167 3.833 8 F -0.111 7.111 9 C -0.175 4.175 10 C 0.559 3.441 11 O -0.519 6.519 12 N -0.722 5.722 13 C 0.146 3.854 14 H 0.091 0.909 15 C -0.126 4.126 16 C -0.110 4.110 17 C -0.086 4.086 18 H 0.073 0.927 19 C -0.116 4.116 20 C 0.073 3.927 21 O -0.577 6.577 22 C -0.115 4.115 23 C -0.129 4.129 24 C -0.031 4.031 25 H 0.381 0.619 26 H 0.117 0.883 27 H -0.255 1.255 28 H -0.252 1.252 29 H 0.142 0.858 30 H 0.150 0.850 31 H 0.399 0.601 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.381 0.619 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.067 3.893 -3.037 5.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.177 4.177 3 Si 0.587 3.413 4 C -0.142 4.142 5 C -0.077 4.077 6 C -0.175 4.175 7 C 0.146 3.854 8 F -0.089 7.089 9 C -0.179 4.179 10 C 0.345 3.655 11 O -0.395 6.395 12 N -0.374 5.374 13 C 0.042 3.958 14 H 0.109 0.891 15 C -0.164 4.164 16 C -0.148 4.148 17 C -0.105 4.105 18 H 0.092 0.908 19 C -0.154 4.154 20 C -0.005 4.005 21 O -0.382 6.382 22 C -0.153 4.153 23 C -0.168 4.168 24 C -0.050 4.050 25 H 0.229 0.771 26 H 0.135 0.865 27 H -0.180 1.180 28 H -0.176 1.176 29 H 0.159 0.841 30 H 0.168 0.832 31 H 0.235 0.765 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.726 3.961 -2.953 4.993 hybrid contribution 0.634 -0.648 -0.684 1.135 sum -0.091 3.313 -3.636 4.920 Atomic orbital electron populations 1.86523 1.16772 1.81681 1.49392 1.25044 0.85480 1.10257 0.96939 0.94785 0.81156 0.77573 0.87747 1.20330 1.01291 0.94588 0.97947 1.21073 0.94690 0.99710 0.92214 1.21174 1.03610 0.92615 1.00147 1.17758 0.93951 0.90436 0.83255 1.91633 1.85724 1.82276 1.49222 1.20106 1.05694 0.94730 0.97329 1.17973 0.78483 0.85827 0.83169 1.90873 1.50160 1.69936 1.28581 1.45973 1.57102 1.10495 1.23819 1.21064 0.94661 0.78608 1.01493 0.89058 1.21809 0.96964 0.97135 1.00512 1.21510 0.97811 0.93250 1.02190 1.21151 0.95293 0.93708 1.00337 0.90812 1.21558 0.98463 0.93242 1.02135 1.22275 0.98062 0.81225 0.98942 1.86474 1.51386 1.16999 1.83388 1.21647 0.97568 0.95126 1.00954 1.21933 0.98350 0.94997 1.01510 1.21029 0.95210 0.93783 0.94965 0.77127 0.86535 1.17963 1.17627 0.84092 0.83216 0.76550 0.91216 0.90954 0.91027 0.91271 0.91065 0.91007 0.93401 0.93792 0.77243 0.91318 0.91400 0.91712 0.91245 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.17 12.83 -35.23 -0.45 0.72 16 2 C -0.07 0.18 2.79 36.00 0.10 0.28 16 3 Si 0.69 -2.08 29.79 -169.99 -5.06 -7.15 16 4 C -0.14 0.30 5.34 -104.68 -0.56 -0.26 16 5 C -0.06 0.15 8.66 -39.51 -0.34 -0.19 16 6 C -0.16 0.16 10.01 -39.57 -0.40 -0.23 16 7 C 0.17 0.33 7.29 -38.96 -0.28 0.04 16 8 F -0.11 -0.53 15.55 2.25 0.04 -0.50 16 9 C -0.17 -0.23 5.88 -104.91 -0.62 -0.84 16 10 C 0.56 1.67 7.73 -12.40 -0.10 1.57 16 11 O -0.52 -3.65 15.01 5.30 0.08 -3.57 16 12 N -0.72 0.07 5.03 -54.80 -0.28 -0.20 16 13 C 0.15 0.00 2.45 -67.93 -0.17 -0.17 16 14 H 0.09 0.19 7.58 -51.93 -0.39 -0.20 16 15 C -0.13 0.24 5.39 -26.73 -0.14 0.10 16 16 C -0.11 0.18 5.20 -26.73 -0.14 0.04 16 17 C -0.09 0.12 2.19 -90.62 -0.20 -0.08 16 18 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 19 C -0.12 0.02 5.05 -26.73 -0.14 -0.11 16 20 C 0.07 -0.01 6.80 37.16 0.25 0.24 16 21 O -0.58 -0.86 13.66 -35.23 -0.48 -1.34 16 22 C -0.11 0.07 4.96 -26.70 -0.13 -0.06 16 23 C -0.13 0.00 5.50 -26.70 -0.15 -0.15 16 24 C -0.03 0.04 9.17 -39.19 -0.36 -0.32 16 25 H 0.38 -2.22 8.70 45.56 0.40 -1.82 16 26 H 0.12 -0.29 7.96 -51.93 -0.41 -0.70 16 27 H -0.25 0.17 7.11 56.52 0.40 0.57 16 28 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 29 H 0.14 -0.70 4.88 -52.49 -0.26 -0.96 16 30 H 0.15 -0.44 8.06 -52.49 -0.42 -0.87 16 31 H 0.40 -1.06 6.63 -40.82 -0.27 -1.33 16 32 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 33 H 0.07 -0.14 8.14 -51.93 -0.42 -0.57 16 34 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 35 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 36 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 37 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 38 H 0.05 -0.04 6.56 -51.93 -0.34 -0.38 16 39 H 0.04 -0.04 8.14 -51.92 -0.42 -0.47 16 40 H 0.38 -1.05 9.12 45.56 0.42 -0.63 16 41 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 42 H 0.07 -0.06 6.56 -51.93 -0.34 -0.40 16 43 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 44 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.14 -0.44 6.40 -52.49 -0.34 -0.77 16 LS Contribution 362.54 15.07 5.46 5.46 Total: 0.00 -9.27 362.54 -9.87 -19.14 By element: Atomic # 1 Polarization: -6.60 SS G_CDS: -5.81 Total: -12.41 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -3.36 Total: -0.15 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -0.28 Total: -0.20 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: -0.85 Total: -4.19 kcal Atomic # 9 Polarization: -0.53 SS G_CDS: 0.04 Total: -0.50 kcal Atomic # 14 Polarization: -2.08 SS G_CDS: -5.06 Total: -7.15 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -9.27 -9.87 -19.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13461142_12335834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.532 kcal (2) G-P(sol) polarization free energy of solvation -9.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds