Wall clock time and date at job start Sat Mar 6 2021 20:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86296 * 109.47410 * 2 1 4 4 C 1.50697 * 109.47399 * 120.00576 * 2 1 3 5 5 C 1.34456 * 126.48044 * 255.02636 * 4 2 1 6 6 N 1.36565 * 109.98309 * 179.97438 * 5 4 2 7 7 C 1.37820 * 109.86483 * 359.97438 * 6 5 4 8 8 C 1.38644 * 133.38544 * 180.02562 * 7 6 5 9 9 C 1.39322 * 119.67116 * 180.02562 * 8 7 6 10 10 C 1.47572 * 119.83270 * 179.97438 * 9 8 7 11 11 O 1.21588 * 120.00089 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99790 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99797 * 179.97438 * 12 10 9 14 14 H 1.08992 * 109.47276 * 325.00066 * 13 12 10 15 15 C 1.53002 * 109.46958 * 84.99979 * 13 12 10 16 16 C 1.52997 * 109.46978 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47164 * 299.99874 * 16 15 13 18 18 H 1.08998 * 109.46505 * 299.99708 * 17 16 15 19 19 C 1.52992 * 109.47223 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47448 * 64.99525 * 19 17 16 21 21 O 1.42907 * 109.47528 * 179.97438 * 20 19 17 22 22 C 1.52997 * 109.47127 * 59.99836 * 17 16 15 23 23 C 1.52996 * 109.46998 * 204.99519 * 13 12 10 24 24 C 1.40198 * 120.33179 * 0.24841 * 9 8 7 25 25 C 1.36237 * 120.38146 * 359.46510 * 24 9 8 26 26 C 1.39879 * 119.95731 * 0.55517 * 25 24 9 27 27 H 0.96701 * 113.99872 * 299.99957 * 1 2 3 28 28 H 1.09007 * 109.46810 * 240.00091 * 2 1 3 29 29 H 1.48499 * 110.00253 * 178.68007 * 3 2 1 30 30 H 1.48502 * 110.00287 * 300.00308 * 3 2 1 31 31 H 1.07999 * 125.00899 * 359.94165 * 5 4 2 32 32 H 0.97005 * 125.06409 * 179.97438 * 6 5 4 33 33 H 1.08005 * 120.16576 * 0.02562 * 8 7 6 34 34 H 0.97001 * 120.00457 * 359.97438 * 12 10 9 35 35 H 1.09002 * 109.47097 * 299.99818 * 15 13 12 36 36 H 1.09001 * 109.47142 * 59.99782 * 15 13 12 37 37 H 1.09001 * 109.47375 * 59.99908 * 16 15 13 38 38 H 1.09000 * 109.47140 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.47563 * 185.00049 * 19 17 16 40 40 H 1.09004 * 109.47313 * 304.99704 * 19 17 16 41 41 H 1.09000 * 109.47346 * 300.00002 * 20 19 17 42 42 H 1.09007 * 109.46964 * 60.00529 * 20 19 17 43 43 H 0.96695 * 114.00595 * 180.02562 * 21 20 19 44 44 H 1.09002 * 109.47153 * 180.02562 * 22 17 16 45 45 H 1.09001 * 109.46832 * 60.00321 * 22 17 16 46 46 H 1.09004 * 109.47368 * 60.00227 * 23 13 12 47 47 H 1.09001 * 109.47372 * 300.00383 * 23 13 12 48 48 H 1.08006 * 119.81053 * 179.72972 * 24 9 8 49 49 H 1.07999 * 120.01930 * 180.27534 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 2.4612 -0.1364 2.3247 6 7 2.8028 -1.0949 3.2355 7 6 2.4937 -2.3432 2.7400 8 6 2.6293 -3.6280 3.2432 9 6 2.2119 -4.7156 2.4791 10 6 2.3551 -6.0847 3.0110 11 8 2.8368 -6.2613 4.1133 12 7 1.9518 -7.1392 2.2749 13 6 2.0945 -8.4984 2.8027 14 1 3.0047 -8.5630 3.3988 15 6 0.8861 -8.8346 3.6789 16 6 1.0354 -10.2538 4.2306 17 6 1.1154 -11.2468 3.0692 18 1 0.2052 -11.1826 2.4732 19 6 1.2641 -12.6660 3.6210 20 6 0.0000 -13.0479 4.3937 21 8 0.1386 -14.3737 4.9086 22 6 2.3237 -10.9105 2.1930 23 6 2.1741 -9.4908 1.6410 24 6 1.6617 -4.5163 1.2051 25 6 1.5195 -3.2569 0.7053 26 6 1.9343 -2.1548 1.4602 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5139 -0.8901 29 1 3.5346 1.7702 0.0321 30 1 1.5615 2.4679 -1.2084 31 1 2.5972 0.9260 2.4627 32 1 3.2032 -0.9227 4.1021 33 1 3.0565 -3.7849 4.2227 34 1 1.5672 -6.9983 1.3956 35 1 0.8294 -8.1276 4.5065 36 1 -0.0241 -8.7700 3.0828 37 1 1.9457 -10.3180 4.8269 38 1 0.1748 -10.4933 4.8552 39 1 1.4101 -13.3632 2.7959 40 1 2.1247 -12.7080 4.2887 41 1 -0.1460 -12.3508 5.2188 42 1 -0.8606 -13.0060 3.7260 43 1 -0.6278 -14.6829 5.4106 44 1 2.3805 -11.6175 1.3654 45 1 3.2340 -10.9746 2.7893 46 1 3.0349 -9.2513 1.0167 47 1 1.2638 -9.4262 1.0449 48 1 1.3449 -5.3658 0.6181 49 1 1.0908 -3.1099 -0.2750 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13461142_12335838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:06:07 Heat of formation + Delta-G solvation = -79.263005 kcal Electronic energy + Delta-G solvation = -29463.603494 eV Core-core repulsion = 25356.338340 eV Total energy + Delta-G solvation = -4107.265154 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.46097 -41.21725 -39.71818 -37.97058 -37.71524 -37.42268 -35.77251 -33.25929 -32.89963 -31.80548 -30.72628 -30.60020 -28.41078 -26.46221 -25.08694 -24.14250 -23.66517 -23.36768 -21.75877 -21.46856 -20.88315 -20.68217 -19.37064 -18.43216 -18.25524 -17.79080 -17.20209 -16.95560 -16.53892 -16.20123 -16.02375 -15.94284 -15.55332 -15.37958 -15.18659 -15.13689 -14.97719 -14.80565 -14.74386 -14.59596 -14.38319 -14.01563 -13.66816 -13.47309 -13.16411 -13.08633 -12.91876 -12.64613 -12.29528 -12.28023 -12.18622 -12.11394 -11.95887 -11.92892 -11.72407 -11.34139 -11.19384 -11.00021 -10.81857 -10.78382 -10.29237 -10.12940 -9.36812 -8.79048 -4.97052 -0.32855 0.36267 1.38985 1.42186 1.71734 1.90822 1.91472 2.05829 2.26123 2.85947 3.26794 3.56787 3.62637 3.65481 3.72066 3.74312 3.88853 3.91663 3.95599 4.01721 4.11717 4.17799 4.26828 4.29724 4.34706 4.40378 4.49115 4.50765 4.53763 4.55231 4.57449 4.58867 4.60674 4.77064 4.77775 4.92776 4.95608 5.02785 5.07091 5.14933 5.15949 5.18708 5.21035 5.23284 5.37755 5.40333 5.43822 5.50374 5.55405 5.61391 5.97679 6.47194 6.54472 6.85929 6.90882 7.14034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.039 4.039 3 Si 0.794 3.206 4 C -0.235 4.235 5 C 0.096 3.904 6 N -0.577 5.577 7 C 0.066 3.934 8 C -0.068 4.068 9 C -0.138 4.138 10 C 0.561 3.439 11 O -0.583 6.583 12 N -0.709 5.709 13 C 0.145 3.855 14 H 0.064 0.936 15 C -0.123 4.123 16 C -0.112 4.112 17 C -0.077 4.077 18 H 0.086 0.914 19 C -0.116 4.116 20 C 0.069 3.931 21 O -0.602 6.602 22 C -0.110 4.110 23 C -0.118 4.118 24 C -0.107 4.107 25 C -0.087 4.087 26 C -0.082 4.082 27 H 0.393 0.607 28 H 0.096 0.904 29 H -0.285 1.285 30 H -0.305 1.305 31 H 0.219 0.781 32 H 0.435 0.565 33 H 0.128 0.872 34 H 0.414 0.586 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.396 0.604 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.152 0.848 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 4.018 -0.741 5.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.149 4.149 3 Si 0.699 3.301 4 C -0.242 4.242 5 C -0.033 4.033 6 N -0.181 5.181 7 C -0.041 4.041 8 C -0.089 4.089 9 C -0.142 4.142 10 C 0.350 3.650 11 O -0.464 6.464 12 N -0.360 5.360 13 C 0.041 3.959 14 H 0.082 0.918 15 C -0.162 4.162 16 C -0.150 4.150 17 C -0.096 4.096 18 H 0.104 0.896 19 C -0.153 4.153 20 C -0.008 4.008 21 O -0.410 6.410 22 C -0.148 4.148 23 C -0.156 4.156 24 C -0.127 4.127 25 C -0.105 4.105 26 C -0.087 4.087 27 H 0.243 0.757 28 H 0.114 0.886 29 H -0.212 1.212 30 H -0.233 1.233 31 H 0.236 0.764 32 H 0.275 0.725 33 H 0.145 0.855 34 H 0.252 0.748 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.246 0.754 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.106 0.894 48 H 0.169 0.831 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.520 4.226 -1.103 4.624 hybrid contribution -0.258 -0.636 0.314 0.755 sum -1.778 3.589 -0.789 4.082 Atomic orbital electron populations 1.86460 1.17872 1.82308 1.50263 1.24538 0.84623 1.10173 0.95517 0.94063 0.77093 0.73626 0.85278 1.20856 1.12592 0.91479 0.99318 1.22369 0.97132 0.95790 0.87991 1.41821 1.54098 1.03243 1.18894 1.18114 1.03894 0.86882 0.95192 1.20138 0.99815 0.88887 1.00061 1.19478 1.06232 0.91809 0.96667 1.18389 0.76884 0.85472 0.84258 1.90759 1.46826 1.86789 1.22035 1.45900 1.63254 1.05596 1.21246 1.21037 0.98533 0.80400 0.95944 0.91815 1.21851 0.98416 0.96796 0.99112 1.21604 1.02199 0.93414 0.97769 1.21073 0.99659 0.92548 0.96271 0.89573 1.21548 0.97407 0.96539 0.99825 1.22369 0.98147 0.83062 0.97235 1.86427 1.47226 1.32433 1.74945 1.21524 0.97818 0.95836 0.99590 1.21772 1.03868 0.93624 0.96323 1.20896 0.99653 0.98091 0.94047 1.20404 0.99188 0.90763 1.00141 1.19586 1.00921 0.94334 0.93874 0.75715 0.88616 1.21225 1.23339 0.76425 0.72483 0.85452 0.74805 0.93758 0.90321 0.92746 0.90933 0.91408 0.92408 0.92884 0.92558 0.75437 0.90115 0.92320 0.90651 0.89383 0.83094 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.07 12.88 -148.98 -1.92 -1.85 16 2 C -0.04 0.05 3.06 71.23 0.22 0.27 16 3 Si 0.79 -3.90 30.75 68.60 2.11 -1.79 16 4 C -0.24 0.12 5.57 -18.65 -0.10 0.01 16 5 C 0.10 -0.55 10.43 83.09 0.87 0.32 16 6 N -0.58 1.92 6.07 -187.71 -1.14 0.78 16 7 C 0.07 0.23 7.26 38.96 0.28 0.51 16 8 C -0.07 -0.42 9.61 22.63 0.22 -0.20 16 9 C -0.14 -0.79 5.87 -20.08 -0.12 -0.91 16 10 C 0.56 4.53 7.72 86.71 0.67 5.20 16 11 O -0.58 -9.40 15.97 -3.99 -0.06 -9.46 16 12 N -0.71 -0.84 5.03 -445.66 -2.24 -3.08 16 13 C 0.15 0.18 2.45 44.99 0.11 0.29 16 14 H 0.06 0.44 7.58 -2.39 -0.02 0.42 16 15 C -0.12 -0.13 5.49 30.59 0.17 0.03 16 16 C -0.11 0.05 4.96 30.60 0.15 0.20 16 17 C -0.08 0.21 2.19 -10.79 -0.02 0.19 16 18 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 19 C -0.12 -0.01 5.05 30.59 0.15 0.15 16 20 C 0.07 -0.02 6.80 71.98 0.49 0.47 16 21 O -0.60 -1.91 13.66 -148.98 -2.04 -3.94 16 22 C -0.11 0.34 5.21 30.61 0.16 0.50 16 23 C -0.12 0.47 5.39 30.61 0.17 0.63 16 24 C -0.11 -0.15 9.46 22.28 0.21 0.06 16 25 C -0.09 -0.25 10.03 22.20 0.22 -0.03 16 26 C -0.08 -0.33 6.35 -20.14 -0.13 -0.46 16 27 H 0.39 -3.32 8.70 -74.06 -0.64 -3.97 16 28 H 0.10 0.10 7.96 -2.38 -0.02 0.08 16 29 H -0.29 0.00 7.11 99.48 0.71 0.71 16 30 H -0.31 -1.11 7.11 99.48 0.71 -0.41 16 31 H 0.22 -3.23 6.35 -2.91 -0.02 -3.25 16 32 H 0.43 -3.88 8.96 -92.70 -0.83 -4.71 16 33 H 0.13 0.87 7.62 -2.91 -0.02 0.85 16 34 H 0.41 -1.99 6.59 -92.71 -0.61 -2.61 16 35 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.07 -0.10 6.56 -2.39 -0.02 -0.12 16 39 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.05 -0.09 6.56 -2.39 -0.02 -0.10 16 42 H 0.06 -0.16 8.14 -2.38 -0.02 -0.18 16 43 H 0.40 -2.15 9.12 -74.06 -0.68 -2.82 16 44 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 45 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 47 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 48 H 0.15 -0.79 6.36 -2.91 -0.02 -0.81 16 49 H 0.14 0.09 8.06 -2.91 -0.02 0.07 16 Total: 0.00 -27.08 391.48 -3.29 -30.36 By element: Atomic # 1 Polarization: -16.55 SS G_CDS: -1.71 Total: -18.27 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 3.71 Total: 7.24 kcal Atomic # 7 Polarization: 1.08 SS G_CDS: -3.38 Total: -2.30 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -4.02 Total: -15.25 kcal Atomic # 14 Polarization: -3.90 SS G_CDS: 2.11 Total: -1.79 kcal Total: -27.08 -3.29 -30.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13461142_12335838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.899 kcal (2) G-P(sol) polarization free energy of solvation -27.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds