Wall clock time and date at job start Sat Mar 6 2021 20:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.47461 * 2 1 4 4 C 1.50703 * 109.47129 * 120.00416 * 2 1 3 5 5 C 1.38604 * 119.84606 * 74.99569 * 4 2 1 6 6 F 1.35104 * 119.91637 * 359.97438 * 5 4 2 7 7 C 1.38111 * 120.16971 * 180.02562 * 5 4 2 8 8 C 1.39614 * 119.85170 * 359.97438 * 7 5 4 9 9 C 1.47693 * 120.15775 * 179.97438 * 8 7 5 10 10 O 1.21576 * 119.99771 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00261 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00198 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47092 * 34.99790 * 12 11 9 14 14 C 1.53005 * 109.47094 * 154.99525 * 12 11 9 15 15 C 1.52999 * 109.47159 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 12 17 17 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 18 18 C 1.53002 * 109.46817 * 179.97438 * 16 15 14 19 19 C 1.53003 * 109.46754 * 174.99829 * 18 16 15 20 20 O 1.42900 * 109.46963 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 22 22 C 1.52997 * 109.47007 * 274.99841 * 12 11 9 23 23 C 1.39851 * 119.68801 * 0.25388 * 8 7 5 24 24 F 1.35095 * 120.08366 * 179.72463 * 23 8 7 25 25 C 1.38228 * 119.84018 * 255.01969 * 4 2 1 26 26 H 0.96694 * 114.00210 * 59.99799 * 1 2 3 27 27 H 1.09002 * 109.46813 * 239.99829 * 2 1 3 28 28 H 1.48497 * 110.00051 * 298.68534 * 3 2 1 29 29 H 1.48503 * 109.99589 * 59.99989 * 3 2 1 30 30 H 1.08003 * 120.08077 * 180.02562 * 7 5 4 31 31 H 0.97002 * 119.99692 * 359.97438 * 11 9 8 32 32 H 1.09002 * 109.46935 * 60.00169 * 14 12 11 33 33 H 1.09000 * 109.47360 * 300.00194 * 14 12 11 34 34 H 1.08996 * 109.46929 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.46716 * 60.00455 * 15 14 12 36 36 H 1.09000 * 109.47059 * 294.99790 * 18 16 15 37 37 H 1.08996 * 109.47073 * 54.99883 * 18 16 15 38 38 H 1.09000 * 109.47306 * 299.99810 * 19 18 16 39 39 H 1.09000 * 109.46927 * 59.99869 * 19 18 16 40 40 H 0.96705 * 114.00136 * 179.97438 * 20 19 18 41 41 H 1.08992 * 109.47399 * 59.99823 * 21 16 15 42 42 H 1.09004 * 109.46724 * 180.02562 * 21 16 15 43 43 H 1.09002 * 109.46695 * 299.99637 * 22 12 11 44 44 H 1.08993 * 109.47194 * 59.99623 * 22 12 11 45 45 H 1.07998 * 119.92973 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.8678 -2.0932 1.3028 6 9 1.3557 -2.7991 0.2709 7 6 2.3258 -2.7512 2.4274 8 6 2.8543 -2.0204 3.4932 9 6 3.3455 -2.7170 4.6993 10 8 3.8047 -2.0777 5.6258 11 7 3.2846 -4.0613 4.7728 12 6 3.7713 -4.7523 5.9695 13 1 3.5604 -4.1458 6.8503 14 6 3.0662 -6.1039 6.1002 15 6 3.5749 -6.8258 7.3495 16 6 5.0842 -7.0471 7.2317 17 1 5.2948 -7.6535 6.3507 18 6 5.5929 -7.7685 8.4814 19 6 7.0766 -8.1008 8.3100 20 8 7.5519 -8.7740 9.4774 21 6 5.7892 -5.6955 7.1011 22 6 5.2806 -4.9736 5.8522 23 6 2.9111 -0.6252 3.4157 24 9 3.4158 0.0902 4.4445 25 6 2.4528 0.0199 2.2817 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5139 -0.8900 28 1 1.5879 2.4585 -1.2242 29 1 1.5615 2.4678 1.2085 30 1 2.2760 -3.8287 2.4821 31 1 2.9178 -4.5714 4.0337 32 1 3.2771 -6.7104 5.2194 33 1 1.9909 -5.9462 6.1837 34 1 3.0723 -7.7885 7.4429 35 1 3.3643 -6.2195 8.2305 36 1 5.4630 -7.1243 9.3510 37 1 5.0284 -8.6899 8.6242 38 1 7.2065 -8.7451 7.4404 39 1 7.6411 -7.1794 8.1671 40 1 8.4873 -9.0160 9.4384 41 1 5.5786 -5.0893 7.9820 42 1 6.8644 -5.8533 7.0167 43 1 5.4915 -5.5801 4.9714 44 1 5.7828 -4.0108 5.7590 45 1 2.4993 1.0971 2.2188 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13461142_12360598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:06:44 Heat of formation + Delta-G solvation = -191.415058 kcal Electronic energy + Delta-G solvation = -29872.765745 eV Core-core repulsion = 25299.145173 eV Total energy + Delta-G solvation = -4573.620573 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -50.13402 -50.11159 -41.54836 -40.27122 -39.44655 -37.84782 -37.70824 -35.84907 -33.85822 -32.42851 -31.78349 -31.41023 -28.85476 -27.52236 -24.64818 -24.39935 -23.93037 -23.18963 -21.88312 -21.68870 -20.90581 -19.53673 -18.79075 -18.68259 -18.45362 -18.31942 -17.46188 -17.19419 -17.09918 -16.55011 -16.45516 -16.23415 -15.95211 -15.71809 -15.64818 -15.48689 -15.30054 -15.09786 -14.95546 -14.60514 -14.49757 -14.00112 -13.77450 -13.72155 -13.59093 -13.46076 -13.14397 -13.11419 -12.88659 -12.40742 -12.18772 -12.09983 -12.00207 -11.95041 -11.73255 -11.34827 -11.20884 -11.06468 -10.81267 -10.64631 -10.60384 -10.16808 -9.83682 -4.98223 -0.82829 -0.32560 1.14105 1.36498 1.54262 1.83897 1.87690 2.21573 2.73907 2.82399 3.04987 3.27244 3.31330 3.41967 3.61603 3.64911 3.72056 3.73119 3.94624 4.01429 4.12218 4.18497 4.27867 4.29599 4.32113 4.35544 4.41311 4.51918 4.53424 4.56402 4.58736 4.61668 4.66726 4.71798 4.78229 4.93282 5.03187 5.08341 5.16231 5.16724 5.19888 5.23579 5.34436 5.38293 5.41149 5.54590 6.32448 6.47878 6.87017 6.99992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.091 4.091 3 Si 0.766 3.234 4 C -0.055 4.055 5 C 0.104 3.896 6 F -0.125 7.125 7 C -0.075 4.075 8 C -0.148 4.148 9 C 0.558 3.442 10 O -0.561 6.561 11 N -0.703 5.703 12 C 0.145 3.855 13 H 0.065 0.935 14 C -0.118 4.118 15 C -0.111 4.111 16 C -0.077 4.077 17 H 0.088 0.912 18 C -0.116 4.116 19 C 0.069 3.931 20 O -0.602 6.602 21 C -0.113 4.113 22 C -0.123 4.123 23 C 0.138 3.862 24 F -0.125 7.125 25 C -0.132 4.132 26 H 0.401 0.599 27 H 0.106 0.894 28 H -0.275 1.275 29 H -0.290 1.290 30 H 0.185 0.815 31 H 0.416 0.584 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.396 0.604 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -3.787 -6.804 7.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.199 4.199 3 Si 0.670 3.330 4 C -0.056 4.056 5 C 0.084 3.916 6 F -0.103 7.103 7 C -0.094 4.094 8 C -0.152 4.152 9 C 0.345 3.655 10 O -0.440 6.440 11 N -0.355 5.355 12 C 0.041 3.959 13 H 0.083 0.917 14 C -0.156 4.156 15 C -0.149 4.149 16 C -0.095 4.095 17 H 0.106 0.894 18 C -0.154 4.154 19 C -0.008 4.008 20 O -0.411 6.411 21 C -0.151 4.151 22 C -0.162 4.162 23 C 0.118 3.882 24 F -0.103 7.103 25 C -0.150 4.150 26 H 0.253 0.747 27 H 0.124 0.876 28 H -0.201 1.201 29 H -0.217 1.217 30 H 0.202 0.798 31 H 0.254 0.746 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.246 0.754 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.106 -2.762 -5.420 6.182 hybrid contribution -0.699 -0.053 -0.699 0.990 sum 0.407 -2.815 -6.119 6.748 Atomic orbital electron populations 1.86535 1.17453 1.80965 1.51433 1.24982 0.85036 1.12573 0.97287 0.93956 0.90160 0.71486 0.77419 1.19496 0.97971 0.92155 0.96021 1.17311 0.99152 0.88885 0.86208 1.91562 1.84423 1.78081 1.56279 1.21353 0.95812 1.02451 0.89802 1.19845 1.06379 0.92219 0.96739 1.18052 0.78403 0.83149 0.85919 1.90869 1.46655 1.66912 1.39597 1.45859 1.63165 1.05213 1.21274 1.21088 0.94106 0.93696 0.87036 0.91667 1.21771 1.00195 0.93645 0.99986 1.21517 0.94846 1.01066 0.97426 1.21079 0.95040 0.95684 0.97736 0.89397 1.21556 0.94651 1.00700 0.98466 1.22375 0.95334 0.95910 0.87215 1.86430 1.32584 1.79961 1.42116 1.21601 1.00389 0.95802 0.97292 1.21847 0.94626 1.00286 0.99442 1.17770 0.96422 0.88567 0.85479 1.91596 1.84100 1.77634 1.56940 1.21042 1.00639 1.02148 0.91161 0.74696 0.87621 1.20079 1.21724 0.79824 0.74573 0.89078 0.90532 0.90130 0.92434 0.92516 0.91462 0.92489 0.92882 0.75433 0.92856 0.90897 0.89940 0.93574 0.81703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.11 12.86 -148.98 -1.92 -1.81 16 2 C -0.09 0.28 2.43 71.24 0.17 0.45 16 3 Si 0.77 -3.44 30.19 68.60 2.07 -1.37 16 4 C -0.06 0.01 5.30 -19.78 -0.10 -0.09 16 5 C 0.10 -0.08 7.23 22.33 0.16 0.08 16 6 F -0.13 -0.07 16.73 44.97 0.75 0.69 16 7 C -0.08 0.25 9.52 22.57 0.21 0.47 16 8 C -0.15 -0.35 5.88 -20.06 -0.12 -0.46 16 9 C 0.56 3.03 7.73 86.74 0.67 3.70 16 10 O -0.56 -8.29 15.00 -3.96 -0.06 -8.35 16 11 N -0.70 1.45 5.03 -445.55 -2.24 -0.79 16 12 C 0.14 -0.16 2.45 44.99 0.11 -0.05 16 13 H 0.07 0.32 7.58 -2.39 -0.02 0.30 16 14 C -0.12 0.73 5.39 30.60 0.16 0.89 16 15 C -0.11 0.50 5.20 30.59 0.16 0.66 16 16 C -0.08 0.32 2.19 -10.79 -0.02 0.30 16 17 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 18 C -0.12 0.10 5.05 30.60 0.15 0.25 16 19 C 0.07 -0.08 6.80 71.98 0.49 0.41 16 20 O -0.60 -1.56 13.66 -148.98 -2.03 -3.60 16 21 C -0.11 0.21 4.96 30.58 0.15 0.37 16 22 C -0.12 0.15 5.49 30.58 0.17 0.31 16 23 C 0.14 0.71 7.28 22.67 0.17 0.87 16 24 F -0.12 -1.36 15.55 44.97 0.70 -0.66 16 25 C -0.13 -0.13 8.62 22.28 0.19 0.06 16 26 H 0.40 -3.35 8.74 -74.06 -0.65 -4.00 16 27 H 0.11 -0.73 7.89 -2.39 -0.02 -0.75 16 28 H -0.27 0.23 7.11 99.48 0.71 0.94 16 29 H -0.29 -0.66 6.74 99.48 0.67 0.01 16 30 H 0.18 -2.00 6.40 -2.91 -0.02 -2.02 16 31 H 0.42 -3.81 6.63 -92.71 -0.62 -4.42 16 32 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 33 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 35 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.05 -0.13 6.56 -2.39 -0.02 -0.15 16 40 H 0.40 -2.37 9.12 -74.05 -0.68 -3.04 16 41 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.07 -0.20 6.57 -2.39 -0.02 -0.22 16 43 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.17 -0.23 4.87 -2.91 -0.01 -0.24 16 Total: 0.00 -23.28 368.32 -0.87 -24.16 By element: Atomic # 1 Polarization: -15.62 SS G_CDS: -0.88 Total: -16.49 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 2.73 Total: 8.22 kcal Atomic # 7 Polarization: 1.45 SS G_CDS: -2.24 Total: -0.79 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -4.01 Total: -13.76 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 1.45 Total: 0.02 kcal Atomic # 14 Polarization: -3.44 SS G_CDS: 2.07 Total: -1.37 kcal Total: -23.28 -0.87 -24.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13461142_12360598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.258 kcal (2) G-P(sol) polarization free energy of solvation -23.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds