Wall clock time and date at job start Sat Mar 6 2021 20:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86302 * 109.47311 * 2 1 4 4 C 1.50708 * 109.47059 * 119.99727 * 2 1 3 5 5 C 1.34177 * 125.43288 * 65.36417 * 4 2 1 6 6 C 1.47025 * 105.95083 * 180.14300 * 5 4 2 7 7 C 1.47374 * 127.19158 * 179.83320 * 6 5 4 8 8 O 1.21613 * 119.99909 * 359.70963 * 7 6 5 9 9 N 1.34777 * 120.00067 * 179.71205 * 7 6 5 10 10 C 1.46500 * 120.00075 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47092 * 324.99806 * 10 9 7 12 12 C 1.52997 * 109.47007 * 84.99755 * 10 9 7 13 13 C 1.52999 * 109.47317 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47159 * 300.00546 * 13 12 10 15 15 H 1.09002 * 109.46935 * 299.99411 * 14 13 12 16 16 C 1.53002 * 109.46982 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.47063 * 64.99850 * 16 14 13 18 18 O 1.42900 * 109.46633 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47452 * 59.99536 * 14 13 12 20 20 C 1.53000 * 109.47023 * 204.99547 * 10 9 7 21 21 C 1.36410 * 105.61510 * 359.57240 * 6 5 4 22 22 O 1.33655 * 108.39706 * 0.25932 * 21 6 5 23 23 H 0.96705 * 114.00404 * 300.00047 * 1 2 3 24 24 H 1.08994 * 109.47376 * 239.99898 * 2 1 3 25 25 H 1.48498 * 110.00138 * 178.67752 * 3 2 1 26 26 H 1.48501 * 110.00208 * 300.00196 * 3 2 1 27 27 H 1.07997 * 127.02461 * 359.97438 * 5 4 2 28 28 H 0.96997 * 119.99651 * 359.97438 * 9 7 6 29 29 H 1.08996 * 109.47853 * 300.00060 * 12 10 9 30 30 H 1.09002 * 109.47153 * 60.00089 * 12 10 9 31 31 H 1.09000 * 109.47486 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.46716 * 60.00091 * 13 12 10 33 33 H 1.09000 * 109.47173 * 184.99606 * 16 14 13 34 34 H 1.09000 * 109.47089 * 304.99682 * 16 14 13 35 35 H 1.08996 * 109.47287 * 299.99590 * 17 16 14 36 36 H 1.09000 * 109.47306 * 59.99965 * 17 16 14 37 37 H 0.96705 * 113.99806 * 180.02562 * 18 17 16 38 38 H 1.08993 * 109.47194 * 179.97438 * 19 14 13 39 39 H 1.09002 * 109.46695 * 59.99734 * 19 14 13 40 40 H 1.08992 * 109.47399 * 300.00063 * 20 10 9 41 41 H 1.09004 * 109.46724 * 60.00549 * 20 10 9 42 42 H 1.08000 * 125.80508 * 180.25891 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 1.7609 -2.0136 1.5004 6 6 2.4126 -2.2462 2.7977 7 6 2.5008 -3.5193 3.5349 8 8 1.9943 -4.5247 3.0747 9 7 3.1426 -3.5693 4.7189 10 6 3.2297 -4.8347 5.4520 11 1 2.3135 -5.4057 5.3015 12 6 4.4236 -5.6412 4.9371 13 6 4.5150 -6.9625 5.7030 14 6 4.6985 -6.6756 7.1947 15 1 5.6147 -6.1045 7.3449 16 6 4.7893 -7.9969 7.9607 17 6 6.0525 -8.7477 7.5345 18 8 6.1369 -9.9821 8.2496 19 6 3.5046 -5.8691 7.7096 20 6 3.4130 -4.5483 6.9437 21 6 2.9237 -1.0386 3.1736 22 8 2.6259 -0.1419 2.2283 23 1 -0.3934 0.4417 0.7651 24 1 1.7923 -0.5138 -0.8899 25 1 3.5346 1.7703 0.0322 26 1 1.5615 2.4680 -1.2085 27 1 1.2474 -2.7423 0.8908 28 1 3.5467 -2.7675 5.0857 29 1 4.2931 -5.8452 3.8743 30 1 5.3398 -5.0702 5.0876 31 1 5.3658 -7.5369 5.3365 32 1 3.5988 -7.5336 5.5529 33 1 4.8308 -7.7944 9.0309 34 1 3.9127 -8.6059 7.7399 35 1 6.0111 -8.9504 6.4644 36 1 6.9291 -8.1387 7.7554 37 1 6.9155 -10.5117 8.0294 38 1 3.6351 -5.6652 8.7723 39 1 2.5885 -6.4403 7.5594 40 1 4.3292 -3.9775 7.0942 41 1 2.5624 -3.9738 7.3106 42 1 3.4752 -0.8407 4.0808 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13461142_13456056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:08:25 Heat of formation + Delta-G solvation = -121.929876 kcal Electronic energy + Delta-G solvation = -23686.430094 eV Core-core repulsion = 20019.812143 eV Total energy + Delta-G solvation = -3666.617950 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.72666 -41.06300 -39.54239 -38.00631 -37.77164 -35.76996 -34.09559 -32.83629 -31.82722 -31.59374 -28.61182 -26.66881 -25.23494 -24.16557 -23.34969 -22.30875 -21.74700 -21.20949 -20.55634 -19.32227 -18.34810 -17.88032 -17.51605 -17.39306 -17.14533 -16.48955 -16.18215 -15.99946 -15.65531 -15.45264 -15.24464 -14.97422 -14.81012 -14.58885 -14.25739 -14.04812 -13.81206 -13.51119 -13.45650 -13.15620 -12.91901 -12.82985 -12.22391 -12.19503 -12.11676 -11.96750 -11.75155 -11.35728 -11.21144 -11.08242 -10.96626 -10.81906 -10.62841 -10.15183 -9.79696 -4.98254 0.26007 0.80458 1.17529 1.51371 1.80650 1.93881 2.04155 2.23982 3.26409 3.30270 3.48307 3.58955 3.63482 3.72017 3.90351 3.98524 4.02118 4.17700 4.25762 4.27371 4.33540 4.37819 4.44791 4.49328 4.51117 4.54940 4.57894 4.60755 4.77320 4.88379 4.93327 5.03490 5.07584 5.10476 5.14294 5.16232 5.19620 5.23216 5.38336 5.43591 5.54115 5.82629 6.48359 6.62385 6.85431 7.15412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.038 4.038 3 Si 0.802 3.198 4 C -0.052 4.052 5 C -0.155 4.155 6 C -0.271 4.271 7 C 0.585 3.415 8 O -0.588 6.588 9 N -0.706 5.706 10 C 0.146 3.854 11 H 0.060 0.940 12 C -0.123 4.123 13 C -0.113 4.113 14 C -0.076 4.076 15 H 0.088 0.912 16 C -0.116 4.116 17 C 0.069 3.931 18 O -0.602 6.602 19 C -0.111 4.111 20 C -0.116 4.116 21 C 0.068 3.932 22 O -0.162 6.162 23 H 0.400 0.600 24 H 0.129 0.871 25 H -0.287 1.287 26 H -0.285 1.285 27 H 0.141 0.859 28 H 0.417 0.583 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.396 0.604 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 6.522 5.296 9.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.147 4.147 3 Si 0.705 3.295 4 C -0.100 4.100 5 C -0.175 4.175 6 C -0.275 4.275 7 C 0.374 3.626 8 O -0.470 6.470 9 N -0.357 5.357 10 C 0.042 3.958 11 H 0.078 0.922 12 C -0.162 4.162 13 C -0.151 4.151 14 C -0.095 4.095 15 H 0.107 0.893 16 C -0.154 4.154 17 C -0.009 4.009 18 O -0.410 6.410 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.002 4.002 22 O -0.058 6.058 23 H 0.251 0.749 24 H 0.146 0.854 25 H -0.214 1.214 26 H -0.212 1.212 27 H 0.158 0.842 28 H 0.254 0.746 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.246 0.754 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 3.867 6.612 4.262 8.766 hybrid contribution 0.483 -1.353 -0.652 1.578 sum 4.350 5.260 3.610 7.722 Atomic orbital electron populations 1.86543 1.16286 1.82255 1.50355 1.24709 0.85317 1.12378 0.92307 0.93158 0.77754 0.73651 0.84952 1.22759 1.01432 0.92752 0.93073 1.22565 1.02519 0.95992 0.96396 1.21490 1.11539 0.95118 0.99364 1.17559 0.77221 0.86876 0.80933 1.90788 1.49366 1.37692 1.69121 1.45753 1.56405 1.13364 1.20206 1.21018 0.98411 0.84236 0.92171 0.92198 1.21852 0.98701 0.96829 0.98822 1.21611 1.01945 0.96534 0.95034 1.21077 0.99788 0.95034 0.93585 0.89338 1.21559 0.97194 0.95853 1.00763 1.22375 0.98334 0.84961 0.95185 1.86430 1.51366 1.34410 1.68841 1.21518 0.97861 0.95222 1.00314 1.21743 1.04040 0.98441 0.91119 1.25338 0.96669 0.84915 0.93287 1.83710 1.56782 1.38893 1.26368 0.74884 0.85409 1.21413 1.21200 0.84153 0.74576 0.94185 0.89972 0.91078 0.93017 0.91296 0.92572 0.93045 0.92441 0.75438 0.89944 0.92560 0.88959 0.90325 0.71906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.17 12.88 -148.98 -1.92 -1.74 16 2 C -0.04 0.04 2.97 71.24 0.21 0.25 16 3 Si 0.80 -2.93 32.09 68.60 2.20 -0.72 16 4 C -0.05 -0.04 6.18 24.76 0.15 0.11 16 5 C -0.15 -0.90 10.90 23.65 0.26 -0.65 16 6 C -0.27 -0.73 6.31 -18.99 -0.12 -0.85 16 7 C 0.59 3.80 7.78 86.65 0.67 4.48 16 8 O -0.59 -10.14 16.65 -4.07 -0.07 -10.20 16 9 N -0.71 1.54 5.07 -445.85 -2.26 -0.72 16 10 C 0.15 -0.10 2.45 44.99 0.11 0.01 16 11 H 0.06 0.36 7.58 -2.39 -0.02 0.34 16 12 C -0.12 0.02 5.49 30.59 0.17 0.19 16 13 C -0.11 0.12 4.96 30.60 0.15 0.27 16 14 C -0.08 0.30 2.19 -10.79 -0.02 0.28 16 15 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 16 C -0.12 0.08 5.05 30.60 0.15 0.23 16 17 C 0.07 -0.06 6.80 71.98 0.49 0.43 16 18 O -0.60 -1.66 13.66 -148.98 -2.03 -3.70 16 19 C -0.11 0.52 5.20 30.58 0.16 0.68 16 20 C -0.12 0.76 5.39 30.58 0.16 0.93 16 21 C 0.07 -0.42 11.61 67.39 0.78 0.37 16 22 O -0.16 0.48 8.90 4.52 0.04 0.52 16 23 H 0.40 -3.53 8.70 -74.05 -0.64 -4.17 16 24 H 0.13 -0.09 7.96 -2.39 -0.02 -0.11 16 25 H -0.29 -0.59 7.11 99.48 0.71 0.12 16 26 H -0.29 -0.74 7.11 99.48 0.71 -0.03 16 27 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 28 H 0.42 -4.48 7.57 -92.71 -0.70 -5.18 16 29 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.07 -0.13 6.57 -2.39 -0.02 -0.14 16 32 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.05 -0.10 6.57 -2.39 -0.02 -0.11 16 36 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.40 -2.29 9.12 -74.05 -0.68 -2.97 16 38 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 42 H 0.27 -4.71 7.47 -2.91 -0.02 -4.73 16 Total: 0.00 -26.86 345.91 -1.64 -28.50 By element: Atomic # 1 Polarization: -17.73 SS G_CDS: -0.94 Total: -18.67 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 3.33 Total: 6.73 kcal Atomic # 7 Polarization: 1.54 SS G_CDS: -2.26 Total: -0.72 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -3.98 Total: -15.13 kcal Atomic # 14 Polarization: -2.93 SS G_CDS: 2.20 Total: -0.72 kcal Total: -26.86 -1.64 -28.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13461142_13456056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.431 kcal (2) G-P(sol) polarization free energy of solvation -26.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds