Wall clock time and date at job start Sun Mar 7 2021 00:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86307 * 109.46726 * 2 1 4 4 C 1.50692 * 109.47710 * 239.99752 * 2 1 3 5 5 C 1.34858 * 125.89139 * 119.95159 * 4 2 1 6 6 C 1.40891 * 107.41436 * 179.81015 * 5 4 2 7 7 C 1.34847 * 107.42171 * 0.38062 * 6 5 4 8 8 C 1.50697 * 125.89308 * 179.89015 * 7 6 5 9 9 C 1.50699 * 109.46810 * 274.68743 * 8 7 6 10 10 O 1.21282 * 120.00006 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00244 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00366 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47175 * 34.99887 * 12 11 9 14 14 C 1.53006 * 109.46998 * 154.99756 * 12 11 9 15 15 C 1.52999 * 109.46626 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47592 * 300.00035 * 15 14 12 17 17 H 1.09000 * 109.47140 * 300.00346 * 16 15 14 18 18 C 1.50699 * 109.47265 * 180.02562 * 16 15 14 19 19 N 1.29905 * 124.85267 * 119.99754 * 18 16 15 20 20 C 1.36065 * 108.80607 * 179.97438 * 19 18 16 21 21 C 1.39536 * 133.81248 * 180.02562 * 20 19 18 22 22 C 1.37725 * 119.73162 * 180.02562 * 21 20 19 23 23 C 1.38681 * 120.41866 * 0.02562 * 22 21 20 24 24 C 1.37951 * 120.47283 * 0.02562 * 23 22 21 25 25 C 1.38621 * 119.87691 * 359.97438 * 24 23 22 26 26 O 1.34233 * 124.85200 * 299.70033 * 18 16 15 27 27 C 1.52996 * 109.47165 * 60.00300 * 16 15 14 28 28 C 1.52997 * 109.47204 * 274.99782 * 12 11 9 29 29 N 1.36342 * 108.21543 * 359.62074 * 7 6 5 30 30 H 0.96690 * 114.00061 * 60.00739 * 1 2 3 31 31 H 1.09007 * 109.47303 * 119.99465 * 2 1 3 32 32 H 1.48498 * 109.99676 * 298.67776 * 3 2 1 33 33 H 1.48499 * 110.00161 * 59.99555 * 3 2 1 34 34 H 1.07993 * 126.29193 * 0.02562 * 5 4 2 35 35 H 1.08001 * 126.28777 * 180.24522 * 6 5 4 36 36 H 1.08996 * 109.47451 * 154.69240 * 8 7 6 37 37 H 1.09001 * 109.47426 * 34.68578 * 8 7 6 38 38 H 0.97001 * 119.99752 * 359.97438 * 11 9 8 39 39 H 1.08993 * 109.46955 * 300.00226 * 14 12 11 40 40 H 1.09000 * 109.47050 * 60.00054 * 14 12 11 41 41 H 1.09000 * 109.47160 * 60.00369 * 15 14 12 42 42 H 1.09002 * 109.46719 * 180.02562 * 15 14 12 43 43 H 1.08001 * 120.13634 * 0.02562 * 21 20 19 44 44 H 1.07994 * 119.79337 * 180.02562 * 22 21 20 45 45 H 1.08003 * 119.76266 * 179.97438 * 23 22 21 46 46 H 1.08004 * 120.05900 * 180.02562 * 24 23 22 47 47 H 1.08992 * 109.47534 * 180.02562 * 27 16 15 48 48 H 1.08996 * 109.47134 * 59.99508 * 27 16 15 49 49 H 1.09000 * 109.47140 * 300.00127 * 28 12 11 50 50 H 1.09001 * 109.47230 * 59.99271 * 28 12 11 51 51 H 0.96998 * 125.63844 * 180.26239 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9315 -0.7104 -1.2303 5 6 2.7093 -0.1724 -2.1916 6 6 2.9483 -1.1758 -3.1513 7 6 2.3006 -2.2863 -2.7443 8 6 2.2753 -3.6090 -3.4660 9 6 1.1819 -3.5946 -4.5030 10 8 0.4909 -2.6076 -4.6419 11 7 0.9713 -4.6788 -5.2753 12 6 -0.0913 -4.6646 -6.2837 13 1 -0.1748 -3.6647 -6.7096 14 6 0.2441 -5.6646 -7.3921 15 6 -0.8659 -5.6502 -8.4449 16 6 -2.1936 -6.0393 -7.7917 17 1 -2.1097 -7.0391 -7.3658 18 6 -3.2868 -6.0257 -8.8289 19 7 -4.0116 -7.0526 -9.1571 20 6 -4.8948 -6.6760 -10.1211 21 6 -5.8931 -7.3442 -10.8310 22 6 -6.6364 -6.6633 -11.7694 23 6 -6.3983 -5.3189 -12.0129 24 6 -5.4140 -4.6459 -11.3193 25 6 -4.6563 -5.3157 -10.3712 26 8 -3.6546 -4.9493 -9.5416 27 6 -2.5290 -5.0393 -6.6834 28 6 -1.4193 -5.0534 -5.6309 29 7 1.6773 -2.0077 -1.5641 30 1 -0.3933 0.4416 -0.7650 31 1 1.7924 -0.5138 0.8901 32 1 1.5878 2.4585 -1.2243 33 1 1.5613 2.4680 1.2084 34 1 3.0834 0.8403 -2.2189 35 1 3.5397 -1.0737 -4.0492 36 1 2.0871 -4.4096 -2.7508 37 1 3.2360 -3.7754 -3.9533 38 1 1.5237 -5.4683 -5.1639 39 1 1.1902 -5.3877 -7.8572 40 1 0.3276 -6.6645 -6.9663 41 1 -0.9498 -4.6504 -8.8708 42 1 -0.6272 -6.3630 -9.2343 43 1 -6.0821 -8.3913 -10.6454 44 1 -7.4095 -7.1794 -12.3191 45 1 -6.9873 -4.7953 -12.7514 46 1 -5.2345 -3.5988 -11.5140 47 1 -3.4746 -5.3167 -6.2177 48 1 -2.6128 -4.0395 -7.1092 49 1 -1.3358 -6.0533 -5.2050 50 1 -1.6582 -4.3410 -4.8412 51 1 1.1418 -2.6296 -1.0472 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13774298_14644196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:31:57 Heat of formation + Delta-G solvation = 4.780998 kcal Electronic energy + Delta-G solvation = -33721.974915 eV Core-core repulsion = 29168.249850 eV Total energy + Delta-G solvation = -4553.725065 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.173 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -44.40499 -42.32694 -40.98033 -39.49217 -38.81291 -37.86693 -36.03782 -35.34134 -33.28325 -31.96611 -31.94240 -31.80514 -31.68454 -29.94413 -28.96338 -25.61432 -24.73445 -24.23527 -23.92985 -23.10663 -22.42718 -21.67742 -21.36046 -21.23171 -20.81298 -19.08182 -18.95778 -18.34806 -18.03868 -17.83766 -17.58522 -17.07695 -16.72050 -16.40730 -16.34654 -15.73477 -15.48575 -15.32666 -15.19970 -15.14583 -14.95175 -14.82484 -14.60591 -14.37949 -14.12552 -13.96628 -13.87268 -13.85047 -13.56600 -13.49504 -13.34742 -13.22388 -12.77794 -12.63432 -12.55564 -12.46063 -12.38060 -12.24089 -12.19717 -11.87454 -11.62228 -11.59988 -11.43467 -10.92832 -10.84078 -10.06772 -9.90254 -9.78840 -9.55307 -8.95396 -4.89392 -0.41317 0.12627 1.08586 1.26582 1.30940 1.37520 1.65481 1.66531 1.85759 1.93404 2.30083 2.50045 2.56554 2.60395 3.35808 3.39362 3.49265 3.54645 3.70310 3.73508 3.81100 3.84385 3.98430 4.04300 4.07910 4.11161 4.18883 4.22994 4.23606 4.27226 4.29854 4.36066 4.38651 4.43847 4.52045 4.57691 4.66040 4.71321 4.81079 4.83513 4.90736 4.94089 4.96764 5.01054 5.03981 5.13634 5.20031 5.25306 5.26267 5.27902 5.30136 5.31108 5.52567 5.63294 5.99146 6.14066 6.36692 6.45817 6.57264 6.69132 7.31229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.062 4.062 3 Si 0.798 3.202 4 C -0.020 4.020 5 C -0.202 4.202 6 C -0.201 4.201 7 C 0.035 3.965 8 C -0.067 4.067 9 C 0.510 3.490 10 O -0.578 6.578 11 N -0.712 5.712 12 C 0.145 3.855 13 H 0.063 0.937 14 C -0.112 4.112 15 C -0.108 4.108 16 C 0.009 3.991 17 H 0.133 0.867 18 C 0.254 3.746 19 N -0.506 5.506 20 C -0.011 4.011 21 C -0.080 4.080 22 C -0.111 4.111 23 C -0.085 4.085 24 C -0.104 4.104 25 C -0.021 4.021 26 O -0.223 6.223 27 C -0.107 4.107 28 C -0.117 4.117 29 N -0.537 5.537 30 H 0.385 0.615 31 H 0.128 0.872 32 H -0.293 1.293 33 H -0.296 1.296 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.420 0.580 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.144 0.856 44 H 0.170 0.830 45 H 0.176 0.824 46 H 0.151 0.849 47 H 0.068 0.932 48 H 0.060 0.940 49 H 0.090 0.910 50 H 0.052 0.948 51 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.438 -4.980 -1.598 6.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.170 4.170 3 Si 0.702 3.298 4 C -0.133 4.133 5 C -0.227 4.227 6 C -0.225 4.225 7 C -0.080 4.080 8 C -0.107 4.107 9 C 0.297 3.703 10 O -0.457 6.457 11 N -0.365 5.365 12 C 0.040 3.960 13 H 0.081 0.919 14 C -0.150 4.150 15 C -0.147 4.147 16 C -0.010 4.010 17 H 0.151 0.849 18 C 0.043 3.957 19 N -0.235 5.235 20 C -0.122 4.122 21 C -0.099 4.099 22 C -0.130 4.130 23 C -0.103 4.103 24 C -0.123 4.123 25 C -0.071 4.071 26 O -0.115 6.115 27 C -0.146 4.146 28 C -0.156 4.156 29 N -0.132 5.132 30 H 0.234 0.766 31 H 0.146 0.854 32 H -0.220 1.220 33 H -0.224 1.224 34 H 0.167 0.833 35 H 0.159 0.841 36 H 0.147 0.853 37 H 0.163 0.837 38 H 0.258 0.742 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.162 0.838 44 H 0.188 0.812 45 H 0.193 0.807 46 H 0.169 0.831 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.108 0.892 50 H 0.070 0.930 51 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 3.779 -4.478 -0.816 5.917 hybrid contribution -1.510 0.151 -0.568 1.620 sum 2.270 -4.328 -1.384 5.079 Atomic orbital electron populations 1.86530 1.18959 1.80556 1.50165 1.24996 0.83011 1.12209 0.96796 0.93457 0.90050 0.70277 0.76012 1.20894 1.06141 0.85841 1.00449 1.20908 1.04946 1.00612 0.96217 1.20845 1.06898 0.93084 1.01703 1.19954 1.01111 0.97608 0.89289 1.20269 1.00079 0.93934 0.96450 1.21048 0.84708 0.82360 0.82148 1.90760 1.50027 1.34913 1.70036 1.45896 1.36239 1.17331 1.37027 1.20923 0.86542 1.00065 0.88500 0.91906 1.21720 0.98549 1.00306 0.94383 1.21551 0.91784 1.02762 0.98627 1.20183 0.87961 1.03771 0.89092 0.84908 1.27034 0.96508 0.78589 0.93585 1.70614 1.08287 1.29602 1.15031 1.20320 1.00116 0.92999 0.98731 1.20678 0.93003 1.01078 0.95122 1.21536 0.99692 0.94788 0.96989 1.21551 0.95629 0.94620 0.98520 1.20337 0.95731 1.01566 0.94679 1.20826 0.93113 0.95782 0.97383 1.84466 1.44247 1.38691 1.44111 1.21495 0.99428 0.98527 0.95175 1.21794 0.93598 1.02955 0.97242 1.41878 1.40933 1.10991 1.19403 0.76591 0.85440 1.22020 1.22363 0.83267 0.84145 0.85276 0.83689 0.74228 0.89200 0.88225 0.91667 0.89892 0.83772 0.81235 0.80690 0.83144 0.91284 0.92122 0.89150 0.92951 0.74396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.91 12.88 -148.98 -1.92 -4.83 16 2 C -0.06 -0.10 3.08 71.23 0.22 0.12 16 3 Si 0.80 0.24 30.59 68.60 2.10 2.33 16 4 C -0.02 -0.07 6.51 41.08 0.27 0.19 16 5 C -0.20 -0.96 9.37 22.14 0.21 -0.75 16 6 C -0.20 -0.98 10.76 22.14 0.24 -0.74 16 7 C 0.03 0.07 5.66 41.08 0.23 0.30 16 8 C -0.07 0.38 6.24 29.10 0.18 0.57 16 9 C 0.51 0.14 7.79 87.66 0.68 0.83 16 10 O -0.58 -6.77 15.70 -3.04 -0.05 -6.82 16 11 N -0.71 4.32 5.08 -442.53 -2.25 2.08 16 12 C 0.14 -0.46 2.45 44.99 0.11 -0.35 16 13 H 0.06 0.21 7.58 -2.39 -0.02 0.19 16 14 C -0.11 0.89 5.39 30.60 0.16 1.06 16 15 C -0.11 0.38 5.18 30.59 0.16 0.54 16 16 C 0.01 0.00 2.66 -11.54 -0.03 -0.03 16 17 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 18 C 0.25 1.93 6.74 88.39 0.60 2.52 16 19 N -0.51 -5.77 11.34 -296.28 -3.36 -9.12 16 20 C -0.01 -0.12 7.24 39.31 0.28 0.17 16 21 C -0.08 -0.39 10.10 22.46 0.23 -0.16 16 22 C -0.11 0.09 10.02 22.25 0.22 0.32 16 23 C -0.09 0.12 10.03 22.31 0.22 0.35 16 24 C -0.10 -0.35 10.06 22.29 0.22 -0.12 16 25 C -0.02 -0.20 7.43 22.87 0.17 -0.03 16 26 O -0.22 -2.26 10.77 -10.08 -0.11 -2.36 16 27 C -0.11 -0.03 5.19 30.58 0.16 0.13 16 28 C -0.12 0.24 5.49 30.58 0.17 0.41 16 29 N -0.54 -1.24 6.07 -171.12 -1.04 -2.28 16 30 H 0.38 0.70 8.70 -74.06 -0.64 0.06 16 31 H 0.13 -0.17 7.96 -2.38 -0.02 -0.19 16 32 H -0.29 -1.81 7.11 99.48 0.71 -1.10 16 33 H -0.30 -1.94 7.11 99.48 0.71 -1.23 16 34 H 0.15 0.24 6.22 -2.91 -0.02 0.22 16 35 H 0.14 0.39 8.06 -2.91 -0.02 0.36 16 36 H 0.13 -1.48 8.14 -2.39 -0.02 -1.50 16 37 H 0.15 -1.61 8.14 -2.39 -0.02 -1.63 16 38 H 0.42 -5.65 8.60 -92.71 -0.80 -6.45 16 39 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H 0.10 -1.20 8.14 -2.39 -0.02 -1.22 16 41 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 43 H 0.14 0.29 8.06 -2.91 -0.02 0.26 16 44 H 0.17 -1.27 8.06 -2.91 -0.02 -1.29 16 45 H 0.18 -1.49 8.06 -2.91 -0.02 -1.51 16 46 H 0.15 -0.10 8.06 -2.91 -0.02 -0.13 16 47 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 48 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 49 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 50 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 51 H 0.42 -0.44 8.96 -92.71 -0.83 -1.27 16 Total: 0.00 -30.81 421.89 -3.16 -33.97 By element: Atomic # 1 Polarization: -17.03 SS G_CDS: -1.25 Total: -18.27 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 4.71 Total: 5.31 kcal Atomic # 7 Polarization: -2.69 SS G_CDS: -6.64 Total: -9.33 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -2.08 Total: -14.01 kcal Atomic # 14 Polarization: 0.24 SS G_CDS: 2.10 Total: 2.33 kcal Total: -30.81 -3.16 -33.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13774298_14644196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.755 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds