Wall clock time and date at job start Sun Mar 7 2021 00:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33813 * 122.44377 * 2 1 4 4 C 1.50693 * 124.52900 * 359.94583 * 3 2 1 5 5 O 1.42905 * 109.47238 * 113.32972 * 4 3 2 6 6 Si 1.86302 * 109.47695 * 233.33021 * 4 3 2 7 7 S 1.70622 * 110.95018 * 179.97438 * 3 2 1 8 8 C 1.75826 * 91.56556 * 359.97438 * 7 3 2 9 9 C 1.46575 * 125.46107 * 179.97438 * 8 7 3 10 10 O 1.21709 * 120.00425 * 180.02562 * 9 8 7 11 11 N 1.34774 * 119.99990 * 0.02562 * 9 8 7 12 12 C 1.46501 * 120.00265 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47140 * 325.00730 * 12 11 9 14 14 C 1.53009 * 109.46944 * 84.99895 * 12 11 9 15 15 C 1.52999 * 109.46889 * 179.97438 * 14 12 11 16 16 C 1.52991 * 109.47586 * 300.00253 * 15 14 12 17 17 H 1.09006 * 109.47240 * 299.99998 * 16 15 14 18 18 C 1.50705 * 109.47303 * 179.97438 * 16 15 14 19 19 N 1.29902 * 124.84983 * 299.70219 * 18 16 15 20 20 C 1.36067 * 108.79621 * 179.83499 * 19 18 16 21 21 C 1.39548 * 133.80621 * 180.11425 * 20 19 18 22 22 C 1.37720 * 119.72915 * 180.32949 * 21 20 19 23 23 C 1.38686 * 120.42075 * 359.97438 * 22 21 20 24 24 C 1.37951 * 120.47383 * 0.03221 * 23 22 21 25 25 C 1.38631 * 119.87449 * 359.97438 * 24 23 22 26 26 O 1.34228 * 124.84672 * 120.00101 * 18 16 15 27 27 C 1.52999 * 109.47242 * 59.99877 * 16 15 14 28 28 C 1.52992 * 109.47392 * 300.00413 * 27 16 15 29 29 C 1.36650 * 109.08271 * 0.24503 * 8 7 3 30 30 H 1.09005 * 109.46506 * 84.90430 * 1 2 3 31 31 H 1.08998 * 109.47397 * 204.90067 * 1 2 3 32 32 H 1.09000 * 109.47594 * 324.90263 * 1 2 3 33 33 H 1.08997 * 109.47266 * 353.33575 * 4 3 2 34 34 H 0.96700 * 113.99917 * 60.00047 * 5 4 3 35 35 H 1.48496 * 110.00003 * 179.97438 * 6 4 3 36 36 H 1.48501 * 109.99590 * 301.32173 * 6 4 3 37 37 H 0.96996 * 120.00007 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.46520 * 60.00455 * 14 12 11 39 39 H 1.09002 * 109.47088 * 300.00300 * 14 12 11 40 40 H 1.09001 * 109.46911 * 179.97438 * 15 14 12 41 41 H 1.09001 * 109.47048 * 60.00925 * 15 14 12 42 42 H 1.07997 * 120.13618 * 0.34441 * 21 20 19 43 43 H 1.07993 * 119.79107 * 179.97438 * 22 21 20 44 44 H 1.07997 * 119.76339 * 180.02562 * 23 22 21 45 45 H 1.08001 * 120.06035 * 179.97438 * 24 23 22 46 46 H 1.09006 * 109.46904 * 59.99915 * 27 16 15 47 47 H 1.09002 * 109.47117 * 180.02562 * 27 16 15 48 48 H 1.09002 * 109.47846 * 179.97438 * 28 27 16 49 49 H 1.09007 * 109.47158 * 299.99883 * 28 27 16 50 50 H 1.08004 * 123.35625 * 179.76028 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1293 0.0000 4 6 1.6354 2.5161 -0.0012 5 8 1.9392 3.1639 1.2359 6 14 2.3589 3.4974 -1.4099 7 16 3.8969 0.7893 0.0007 8 6 3.5938 -0.9426 0.0018 9 6 4.6231 -1.9861 0.0023 10 8 4.3003 -3.1596 0.0026 11 7 5.9273 -1.6461 0.0024 12 6 6.9562 -2.6890 0.0034 13 1 6.6119 -3.5385 0.5933 14 6 7.2253 -3.1414 -1.4333 15 6 8.3003 -4.2301 -1.4322 16 6 9.5887 -3.6741 -0.8229 17 1 9.9326 -2.8245 -1.4129 18 6 10.6474 -4.7467 -0.8213 19 7 10.5494 -5.8854 -0.2040 20 6 11.6850 -6.6021 -0.4233 21 6 12.1241 -7.8638 -0.0199 22 6 13.3640 -8.3142 -0.4155 23 6 14.1775 -7.5223 -1.2120 24 6 13.7564 -6.2730 -1.6181 25 6 12.5114 -5.8037 -1.2291 26 8 11.8286 -4.6594 -1.4529 27 6 9.3197 -3.2217 0.6137 28 6 8.2448 -2.1330 0.6128 29 6 2.2447 -1.1600 -0.0040 30 1 -0.3632 0.0913 -1.0237 31 1 -0.3634 -0.9321 0.4327 32 1 -0.3634 0.8408 0.5909 33 1 0.5541 2.4512 -0.1213 34 1 2.8860 3.2564 1.4093 35 1 1.7851 4.8670 -1.4223 36 1 3.8362 3.5662 -1.2748 37 1 6.1847 -0.7109 0.0025 38 1 7.5696 -2.2919 -2.0231 39 1 6.3072 -3.5371 -1.8676 40 1 8.4916 -4.5527 -2.4557 41 1 7.9564 -5.0797 -0.8423 42 1 11.4941 -8.4846 0.5999 43 1 13.7049 -9.2903 -0.1035 44 1 15.1477 -7.8862 -1.5163 45 1 14.3956 -5.6617 -2.2380 46 1 8.9758 -4.0713 1.2038 47 1 10.2376 -2.8251 1.0477 48 1 8.0527 -1.8110 1.6363 49 1 8.5886 -1.2834 0.0227 50 1 1.8019 -2.1452 -0.0083 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13774298_6739946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:34:18 Heat of formation + Delta-G solvation = -6.026703 kcal Electronic energy + Delta-G solvation = -33489.808358 eV Core-core repulsion = 28961.966653 eV Total energy + Delta-G solvation = -4527.841706 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.134 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -44.36624 -41.29054 -40.00274 -39.36219 -38.84359 -37.69184 -36.13264 -35.30484 -32.80609 -31.95816 -31.76927 -31.63956 -29.83184 -29.64868 -26.89167 -25.25303 -24.34480 -23.92455 -23.87933 -23.12721 -22.29876 -21.75551 -20.96081 -20.22341 -19.41766 -19.04828 -18.34693 -17.94825 -17.83390 -17.71240 -17.09681 -16.96187 -16.36534 -16.11785 -15.84406 -15.70782 -15.45250 -15.24866 -15.17267 -14.99345 -14.80305 -14.65699 -14.45826 -14.12516 -14.03286 -13.91501 -13.53998 -13.44185 -13.35210 -13.20631 -13.16366 -13.01597 -12.64673 -12.58425 -12.53435 -12.43226 -12.34826 -12.27649 -12.20958 -11.78224 -11.68287 -11.51492 -11.43209 -11.24584 -10.93694 -10.27901 -9.87859 -9.71651 -9.51998 -9.43276 -4.98603 -0.69383 -0.38501 0.15230 0.28266 0.68817 1.09965 1.26772 1.30708 1.35087 1.52396 1.89251 1.93888 2.05590 2.59243 2.67866 3.26839 3.40927 3.48903 3.52289 3.55672 3.64150 3.76381 3.83285 4.03617 4.05680 4.09276 4.13137 4.21365 4.24009 4.24830 4.26369 4.27340 4.40075 4.40465 4.45245 4.51875 4.53628 4.68840 4.77865 4.85599 4.86598 4.92252 4.95971 4.99059 5.01450 5.03592 5.08714 5.15561 5.19208 5.23136 5.28177 5.31331 5.33450 5.40299 5.41456 5.65937 6.31898 6.32530 6.50410 7.00544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.100 4.100 3 C -0.231 4.231 4 C -0.050 4.050 5 O -0.540 6.540 6 Si 0.739 3.261 7 S 0.229 5.771 8 C -0.279 4.279 9 C 0.591 3.409 10 O -0.568 6.568 11 N -0.709 5.709 12 C 0.143 3.857 13 H 0.070 0.930 14 C -0.119 4.119 15 C -0.100 4.100 16 C 0.008 3.992 17 H 0.129 0.871 18 C 0.252 3.748 19 N -0.500 5.500 20 C -0.011 4.011 21 C -0.082 4.082 22 C -0.112 4.112 23 C -0.086 4.086 24 C -0.102 4.102 25 C -0.020 4.020 26 O -0.224 6.224 27 C -0.100 4.100 28 C -0.114 4.114 29 C -0.055 4.055 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.140 0.860 34 H 0.384 0.616 35 H -0.280 1.280 36 H -0.255 1.255 37 H 0.411 0.589 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.140 0.860 43 H 0.168 0.832 44 H 0.176 0.824 45 H 0.154 0.846 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.373 3.980 -3.081 6.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.113 4.113 3 C -0.351 4.351 4 C -0.160 4.160 5 O -0.348 6.348 6 Si 0.640 3.360 7 S 0.499 5.501 8 C -0.399 4.399 9 C 0.378 3.622 10 O -0.449 6.449 11 N -0.360 5.360 12 C 0.039 3.961 13 H 0.088 0.912 14 C -0.157 4.157 15 C -0.138 4.138 16 C -0.011 4.011 17 H 0.147 0.853 18 C 0.040 3.960 19 N -0.230 5.230 20 C -0.122 4.122 21 C -0.101 4.101 22 C -0.131 4.131 23 C -0.104 4.104 24 C -0.120 4.120 25 C -0.070 4.070 26 O -0.116 6.116 27 C -0.139 4.139 28 C -0.152 4.152 29 C -0.089 4.089 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.157 0.843 34 H 0.234 0.766 35 H -0.206 1.206 36 H -0.180 1.180 37 H 0.248 0.752 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.158 0.842 43 H 0.185 0.815 44 H 0.193 0.807 45 H 0.172 0.828 46 H 0.083 0.917 47 H 0.102 0.898 48 H 0.105 0.895 49 H 0.119 0.881 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.846 4.578 -2.896 6.644 hybrid contribution -0.348 -0.603 0.785 1.049 sum 3.498 3.976 -2.112 5.701 Atomic orbital electron populations 1.20685 0.87827 1.03602 1.03970 1.18813 0.99108 0.90318 1.03037 1.24552 0.98905 1.00987 1.10652 1.24813 1.06566 0.89495 0.95172 1.86655 1.30588 1.79748 1.37845 0.93881 0.79019 0.78880 0.84205 1.82610 1.02825 0.96463 1.68205 1.24490 0.97857 0.97839 1.19706 1.17163 0.82534 0.87040 0.75501 1.90845 1.82318 1.19933 1.51772 1.45814 1.04509 1.10970 1.74737 1.21091 0.87499 0.90461 0.97011 0.91191 1.21839 0.98201 0.99111 0.96589 1.21441 0.92429 0.98591 1.01375 1.20100 0.88302 0.92237 1.00500 0.85332 1.27010 0.85122 0.95183 0.88665 1.70566 1.23666 1.04744 1.23995 1.20325 0.91531 0.98296 1.02006 1.20655 0.97366 0.92082 0.99985 1.21516 0.92528 1.01667 0.97383 1.21547 1.01272 0.91750 0.95831 1.20342 0.91348 0.97769 1.02586 1.20792 0.97333 0.85924 1.02905 1.84479 1.27843 1.36944 1.62312 1.21473 0.99919 0.99209 0.93302 1.21760 0.91843 0.98616 1.02995 1.20820 0.91248 1.00389 0.96402 0.88898 0.90964 0.90696 0.84281 0.76634 1.20630 1.18004 0.75250 0.88878 0.92378 0.90895 0.92013 0.84173 0.81466 0.80678 0.82831 0.91663 0.89840 0.89469 0.88058 0.83305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.37 9.48 71.24 0.68 1.05 16 2 C -0.10 0.00 5.78 -21.05 -0.12 -0.12 16 3 C -0.23 0.36 4.83 24.68 0.12 0.48 16 4 C -0.05 0.15 2.77 71.23 0.20 0.35 16 5 O -0.54 -0.06 12.88 -148.98 -1.92 -1.97 16 6 Si 0.74 -3.31 32.13 68.60 2.20 -1.10 16 7 S 0.23 -0.68 20.83 -56.49 -1.18 -1.85 16 8 C -0.28 -0.82 6.45 24.07 0.16 -0.66 16 9 C 0.59 3.55 7.75 86.42 0.67 4.22 16 10 O -0.57 -8.25 16.50 -4.38 -0.07 -8.32 16 11 N -0.71 0.64 5.07 -446.58 -2.27 -1.62 16 12 C 0.14 -0.13 2.46 44.99 0.11 -0.02 16 13 H 0.07 0.35 7.58 -2.39 -0.02 0.33 16 14 C -0.12 0.14 5.50 30.60 0.17 0.31 16 15 C -0.10 -0.05 5.18 30.59 0.16 0.11 16 16 C 0.01 -0.01 2.66 -11.54 -0.03 -0.04 16 17 H 0.13 -0.74 8.14 -2.38 -0.02 -0.76 16 18 C 0.25 1.75 6.75 88.40 0.60 2.34 16 19 N -0.50 -5.64 11.32 -296.27 -3.35 -9.00 16 20 C -0.01 -0.11 7.24 39.31 0.28 0.17 16 21 C -0.08 -0.43 10.10 22.46 0.23 -0.20 16 22 C -0.11 0.08 10.02 22.25 0.22 0.30 16 23 C -0.09 0.17 10.03 22.31 0.22 0.39 16 24 C -0.10 -0.23 10.06 22.30 0.22 0.00 16 25 C -0.02 -0.17 7.43 22.88 0.17 0.00 16 26 O -0.22 -1.95 10.77 -10.00 -0.11 -2.06 16 27 C -0.10 0.26 5.18 30.59 0.16 0.41 16 28 C -0.11 0.71 5.39 30.59 0.16 0.88 16 29 C -0.05 -0.18 9.78 21.72 0.21 0.04 16 30 H 0.09 -0.63 8.14 -2.38 -0.02 -0.65 16 31 H 0.07 -0.25 8.10 -2.39 -0.02 -0.27 16 32 H 0.07 -0.30 7.00 -2.39 -0.02 -0.32 16 33 H 0.14 -0.68 6.25 -2.39 -0.01 -0.70 16 34 H 0.38 -2.17 8.70 -74.06 -0.64 -2.81 16 35 H -0.28 -0.63 7.11 99.48 0.71 0.08 16 36 H -0.26 0.65 7.11 99.48 0.71 1.35 16 37 H 0.41 -2.67 7.71 -92.71 -0.72 -3.38 16 38 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.14 0.43 8.06 -2.91 -0.02 0.41 16 43 H 0.17 -1.18 8.06 -2.91 -0.02 -1.20 16 44 H 0.18 -1.58 8.06 -2.91 -0.02 -1.61 16 45 H 0.15 -0.36 8.06 -2.91 -0.02 -0.38 16 46 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 47 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 48 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 49 H 0.10 -1.10 8.14 -2.38 -0.02 -1.12 16 50 H 0.15 0.60 8.06 -2.91 -0.02 0.58 16 Total: 0.00 -24.80 425.58 -2.43 -27.23 By element: Atomic # 1 Polarization: -10.97 SS G_CDS: -0.33 Total: -11.29 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 4.59 Total: 10.00 kcal Atomic # 7 Polarization: -5.00 SS G_CDS: -5.62 Total: -10.62 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -2.10 Total: -12.35 kcal Atomic # 14 Polarization: -3.31 SS G_CDS: 2.20 Total: -1.10 kcal Atomic # 16 Polarization: -0.68 SS G_CDS: -1.18 Total: -1.85 kcal Total: -24.80 -2.43 -27.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13774298_6739946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.200 kcal (2) G-P(sol) polarization free energy of solvation -24.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds