Wall clock time and date at job start Sat Mar 6 2021 23:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86296 * 109.47352 * 2 1 4 4 C 1.50703 * 109.46923 * 120.00348 * 2 1 3 5 5 C 1.31118 * 118.54190 * 249.97277 * 4 2 1 6 6 N 1.39061 * 121.87687 * 180.41703 * 5 4 2 7 7 C 1.47030 * 118.79684 * 346.71952 * 6 5 4 8 8 C 1.53540 * 107.70896 * 43.64833 * 7 6 5 9 9 C 1.50201 * 118.54821 * 70.00272 * 4 2 1 10 10 C 1.50693 * 109.33190 * 39.66301 * 9 4 2 11 11 O 1.21274 * 120.00122 * 120.86637 * 10 9 4 12 12 N 1.34778 * 120.00084 * 300.86224 * 10 9 4 13 13 C 1.46496 * 120.00155 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.47187 * 325.00803 * 13 12 10 15 15 C 1.53002 * 109.46785 * 85.00428 * 13 12 10 16 16 C 1.52994 * 109.47437 * 60.00113 * 15 13 12 17 17 C 1.53004 * 109.47091 * 59.99741 * 16 15 13 18 18 H 1.08995 * 109.46685 * 60.00551 * 17 16 15 19 19 C 1.50700 * 109.46754 * 180.02562 * 17 16 15 20 20 N 1.30110 * 124.94334 * 215.02453 * 19 17 16 21 21 C 1.35787 * 109.64822 * 180.02562 * 20 19 17 22 22 C 1.39705 * 133.61594 * 180.02562 * 21 20 19 23 23 C 1.36637 * 119.89096 * 179.97438 * 22 21 20 24 24 C 1.38736 * 120.66744 * 0.02562 * 23 22 21 25 25 C 1.37893 * 120.45184 * 359.97157 * 24 23 22 26 26 C 1.38789 * 119.68959 * 0.04594 * 25 24 23 27 27 N 1.36043 * 124.94909 * 34.72749 * 19 17 16 28 28 C 1.52998 * 109.47268 * 300.00066 * 17 16 15 29 29 C 1.53001 * 109.47498 * 205.00151 * 13 12 10 30 30 H 0.96696 * 114.00385 * 59.99933 * 1 2 3 31 31 H 1.09005 * 109.47063 * 239.99814 * 2 1 3 32 32 H 1.48500 * 110.00135 * 298.68454 * 3 2 1 33 33 H 1.48504 * 109.99957 * 59.99898 * 3 2 1 34 34 H 1.07995 * 119.07755 * 0.40957 * 5 4 2 35 35 H 0.97006 * 120.64537 * 166.69633 * 6 5 4 36 36 H 1.09002 * 109.82320 * 284.07592 * 7 6 5 37 37 H 1.08998 * 109.82169 * 163.21610 * 7 6 5 38 38 H 1.08997 * 109.62700 * 58.74183 * 8 7 6 39 39 H 1.09003 * 109.62383 * 179.11097 * 8 7 6 40 40 H 1.09007 * 109.18682 * 280.09276 * 9 4 2 41 41 H 0.96997 * 119.99805 * 0.02562 * 12 10 9 42 42 H 1.09005 * 109.46907 * 180.02562 * 15 13 12 43 43 H 1.09005 * 109.47243 * 299.99871 * 15 13 12 44 44 H 1.09005 * 109.47093 * 299.99912 * 16 15 13 45 45 H 1.09001 * 109.47220 * 179.97438 * 16 15 13 46 46 H 1.07998 * 120.05022 * 0.02562 * 22 21 20 47 47 H 1.07992 * 119.66749 * 179.97438 * 23 22 21 48 48 H 1.08001 * 119.77237 * 179.97438 * 24 23 22 49 49 H 1.08000 * 120.15364 * 180.02562 * 25 24 23 50 50 H 0.96992 * 126.34618 * 359.97438 * 27 19 17 51 51 H 1.08994 * 109.47129 * 300.00428 * 28 17 16 52 52 H 1.08992 * 109.46986 * 179.97438 * 28 17 16 53 53 H 1.09001 * 109.46810 * 60.00026 * 29 13 12 54 54 H 1.08988 * 109.47272 * 180.02562 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 1.2305 5 6 2.5120 -0.0030 2.1693 6 7 3.0084 -0.5882 3.3289 7 6 2.6237 -1.9717 3.6447 8 6 2.7181 -2.7900 2.3489 9 6 1.7451 -2.1978 1.3268 10 6 1.9982 -2.8206 -0.0219 11 8 2.8695 -3.6542 -0.1509 12 7 1.2562 -2.4513 -1.0847 13 6 1.5027 -3.0563 -2.3959 14 1 2.5692 -3.2480 -2.5130 15 6 0.7331 -4.3745 -2.5021 16 6 -0.7641 -4.1056 -2.3377 17 6 -1.2344 -3.1505 -3.4367 18 1 -1.0510 -3.6008 -4.4122 19 6 -2.7089 -2.8853 -3.2744 20 7 -3.5465 -2.7080 -4.2541 21 6 -4.7916 -2.4924 -3.7570 22 6 -6.0356 -2.2508 -4.3452 23 6 -7.1373 -2.0690 -3.5577 24 6 -7.0352 -2.1210 -2.1751 25 6 -5.8177 -2.3582 -1.5726 26 6 -4.6877 -2.5449 -2.3564 27 7 -3.3592 -2.8021 -2.0823 28 6 -0.4649 -1.8324 -3.3305 29 6 1.0324 -2.1014 -3.4949 30 1 -0.3934 0.4417 -0.7650 31 1 1.7923 -0.5139 -0.8900 32 1 1.5879 2.4586 -1.2242 33 1 1.5615 2.4679 1.2085 34 1 2.6077 1.0647 2.0384 35 1 3.5981 -0.0933 3.9191 36 1 1.6015 -1.9941 4.0224 37 1 3.3027 -2.3828 4.3917 38 1 3.7343 -2.7408 1.9580 39 1 2.4536 -3.8279 2.5514 40 1 0.7221 -2.4115 1.6366 41 1 0.5595 -1.7844 -0.9815 42 1 0.9168 -4.8249 -3.4775 43 1 1.0681 -5.0549 -1.7191 44 1 -0.9474 -3.6554 -1.3621 45 1 -1.3123 -5.0447 -2.4138 46 1 -6.1263 -2.2087 -5.4205 47 1 -8.0970 -1.8820 -4.0161 48 1 -7.9154 -1.9749 -1.5665 49 1 -5.7439 -2.3981 -0.4959 50 1 -2.9624 -2.9016 -1.2029 51 1 -0.6482 -1.3823 -2.3549 52 1 -0.7996 -1.1523 -4.1136 53 1 1.5806 -1.1623 -3.4192 54 1 1.2153 -2.5517 -4.4704 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13813120_15608500.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:36:11 Heat of formation + Delta-G solvation = 30.895082 kcal Electronic energy + Delta-G solvation = -37267.625860 eV Core-core repulsion = 32785.440369 eV Total energy + Delta-G solvation = -4482.185490 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.200 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -43.26292 -41.79917 -40.04536 -38.91817 -38.15295 -37.73261 -34.97368 -34.21783 -33.60770 -32.81546 -31.94217 -31.61053 -30.92827 -29.38488 -27.30696 -25.95001 -24.74026 -23.89573 -23.35007 -23.17511 -22.81707 -22.12502 -21.60909 -20.18964 -19.25660 -18.93136 -18.78578 -18.59025 -18.11660 -17.87439 -17.12709 -16.82690 -16.53655 -16.27362 -16.04158 -15.60070 -15.49398 -15.27413 -15.13966 -14.98218 -14.90486 -14.85711 -14.70387 -14.53684 -14.01885 -13.86474 -13.70526 -13.55876 -13.45227 -13.35761 -13.29106 -12.90480 -12.80265 -12.68433 -12.53442 -12.30160 -12.24408 -11.84763 -11.82587 -11.75746 -11.69140 -11.46448 -11.40226 -11.29361 -11.03785 -10.76917 -10.49511 -9.82605 -9.39162 -9.15678 -8.46532 -4.92806 -0.05952 0.50473 1.21247 1.31058 1.56105 1.71768 1.74268 1.85648 1.91780 2.32173 2.63387 2.85719 2.92569 3.41430 3.47804 3.60269 3.63486 3.66368 3.82389 3.89258 3.94045 4.01533 4.11842 4.13091 4.18775 4.21768 4.22720 4.32430 4.35979 4.37731 4.39764 4.42317 4.44309 4.47074 4.51213 4.62569 4.65122 4.77934 4.80407 4.82751 4.86806 4.97888 5.00092 5.08437 5.09831 5.11460 5.19637 5.23687 5.26742 5.28193 5.39983 5.43238 5.50118 5.54964 5.60065 5.91096 6.29475 6.34622 6.52944 6.59297 6.83641 6.94613 7.30068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.075 4.075 3 Si 0.735 3.265 4 C -0.254 4.254 5 C 0.156 3.844 6 N -0.744 5.744 7 C 0.121 3.879 8 C -0.118 4.118 9 C -0.037 4.037 10 C 0.526 3.474 11 O -0.577 6.577 12 N -0.714 5.714 13 C 0.138 3.862 14 H 0.081 0.919 15 C -0.123 4.123 16 C -0.108 4.108 17 C -0.004 4.004 18 H 0.110 0.890 19 C 0.297 3.703 20 N -0.529 5.529 21 C 0.014 3.986 22 C -0.089 4.089 23 C -0.126 4.126 24 C -0.104 4.104 25 C -0.117 4.117 26 C 0.032 3.968 27 N -0.586 5.586 28 C -0.108 4.108 29 C -0.120 4.120 30 H 0.385 0.615 31 H 0.087 0.913 32 H -0.289 1.289 33 H -0.291 1.291 34 H 0.143 0.857 35 H 0.414 0.586 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.411 0.589 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.129 0.871 47 H 0.152 0.848 48 H 0.157 0.843 49 H 0.143 0.857 50 H 0.432 0.568 51 H 0.067 0.933 52 H 0.076 0.924 53 H 0.086 0.914 54 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 2.891 3.737 4.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.186 4.186 3 Si 0.641 3.359 4 C -0.265 4.265 5 C 0.033 3.967 6 N -0.375 5.375 7 C -0.004 4.004 8 C -0.157 4.157 9 C -0.058 4.058 10 C 0.313 3.687 11 O -0.456 6.456 12 N -0.372 5.372 13 C 0.034 3.966 14 H 0.099 0.901 15 C -0.162 4.162 16 C -0.146 4.146 17 C -0.024 4.024 18 H 0.128 0.872 19 C 0.030 3.970 20 N -0.250 5.250 21 C -0.104 4.104 22 C -0.109 4.109 23 C -0.146 4.146 24 C -0.124 4.124 25 C -0.138 4.138 26 C -0.078 4.078 27 N -0.198 5.198 28 C -0.147 4.147 29 C -0.158 4.158 30 H 0.235 0.765 31 H 0.104 0.896 32 H -0.216 1.216 33 H -0.219 1.219 34 H 0.160 0.840 35 H 0.251 0.749 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.253 0.747 42 H 0.107 0.893 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.147 0.853 47 H 0.169 0.831 48 H 0.174 0.826 49 H 0.161 0.839 50 H 0.273 0.727 51 H 0.086 0.914 52 H 0.095 0.905 53 H 0.105 0.895 54 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.971 2.691 3.311 4.700 hybrid contribution -1.424 0.198 0.807 1.649 sum 0.547 2.889 4.118 5.060 Atomic orbital electron populations 1.86586 1.19023 1.79831 1.50565 1.24976 0.83678 1.10525 0.99373 0.94292 0.91251 0.73634 0.76716 1.19542 1.15466 0.92991 0.98532 1.20637 0.93108 0.96705 0.86211 1.44672 1.54131 1.14732 1.23942 1.21680 1.01168 0.81283 0.96241 1.21687 0.99489 0.99453 0.95064 1.19675 1.01218 0.92833 0.92062 1.20773 0.80344 0.80798 0.86751 1.90679 1.34285 1.34777 1.85881 1.46627 1.38177 1.43993 1.08386 1.21040 1.00231 0.92935 0.82431 0.90103 1.21838 0.93822 0.97256 1.03280 1.21514 0.96620 0.98919 0.97560 1.19937 0.82228 0.97915 1.02299 0.87152 1.23884 0.96562 0.96677 0.79894 1.70376 1.00088 1.23239 1.31254 1.19474 0.93519 1.06423 0.90980 1.20281 0.89636 1.00253 1.00741 1.21010 0.98814 1.00746 0.94003 1.21317 0.97368 0.98626 0.95044 1.20331 0.89880 1.03635 0.99980 1.19150 0.86295 1.06294 0.96083 1.42968 1.06287 1.60448 1.10127 1.21578 0.94912 0.95336 1.02860 1.21839 0.94627 1.00331 0.99013 0.76536 0.89565 1.21580 1.21851 0.84029 0.74917 0.91958 0.88016 0.91666 0.90429 0.88813 0.74650 0.89291 0.92537 0.91625 0.91483 0.85323 0.83068 0.82550 0.83896 0.72677 0.91406 0.90543 0.89507 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.79 11.38 -148.98 -1.69 0.09 16 2 C -0.08 0.22 1.68 71.24 0.12 0.34 16 3 Si 0.73 -2.35 29.92 68.60 2.05 -0.30 16 4 C -0.25 0.10 5.07 -16.76 -0.08 0.01 16 5 C 0.16 -0.30 9.62 83.39 0.80 0.50 16 6 N -0.74 3.07 5.84 -345.78 -2.02 1.05 16 7 C 0.12 -0.48 7.15 86.46 0.62 0.14 16 8 C -0.12 -0.06 4.91 30.79 0.15 0.09 16 9 C -0.04 -0.04 2.75 -12.43 -0.03 -0.08 16 10 C 0.53 2.08 6.81 87.65 0.60 2.68 16 11 O -0.58 -6.57 15.47 -3.01 -0.05 -6.62 16 12 N -0.71 1.08 2.53 -442.55 -1.12 -0.04 16 13 C 0.14 -0.34 2.78 44.99 0.13 -0.21 16 14 H 0.08 0.09 7.58 -2.39 -0.02 0.07 16 15 C -0.12 0.26 5.60 30.59 0.17 0.44 16 16 C -0.11 0.35 4.77 30.59 0.15 0.50 16 17 C 0.00 0.01 2.66 -11.54 -0.03 -0.02 16 18 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 19 C 0.30 1.14 6.82 137.92 0.94 2.09 16 20 N -0.53 -5.64 11.27 -179.95 -2.03 -7.67 16 21 C 0.01 0.14 7.23 39.45 0.29 0.43 16 22 C -0.09 -0.65 10.05 22.25 0.22 -0.42 16 23 C -0.13 -0.29 9.96 22.01 0.22 -0.07 16 24 C -0.10 -0.07 10.03 22.31 0.22 0.16 16 25 C -0.12 -0.25 10.07 22.32 0.22 -0.02 16 26 C 0.03 0.19 7.30 38.86 0.28 0.47 16 27 N -0.59 -0.96 5.97 -179.22 -1.07 -2.03 16 28 C -0.11 0.57 5.01 30.59 0.15 0.72 16 29 C -0.12 0.79 5.61 30.60 0.17 0.97 16 30 H 0.39 -3.51 8.74 -74.06 -0.65 -4.16 16 31 H 0.09 -0.35 5.29 -2.38 -0.01 -0.36 16 32 H -0.29 -0.43 7.11 99.48 0.71 0.28 16 33 H -0.29 -0.77 6.88 99.48 0.68 -0.09 16 34 H 0.14 -0.62 4.34 -2.91 -0.01 -0.63 16 35 H 0.41 -3.44 8.96 -92.70 -0.83 -4.27 16 36 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H 0.06 0.29 7.77 -2.39 -0.02 0.27 16 39 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.09 0.07 8.14 -2.38 -0.02 0.05 16 41 H 0.41 -1.63 3.38 -92.71 -0.31 -1.95 16 42 H 0.09 -0.36 8.14 -2.38 -0.02 -0.38 16 43 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 44 H 0.07 -0.26 6.82 -2.38 -0.02 -0.27 16 45 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 46 H 0.13 0.73 8.06 -2.91 -0.02 0.70 16 47 H 0.15 -0.43 8.06 -2.91 -0.02 -0.46 16 48 H 0.16 -0.80 8.06 -2.91 -0.02 -0.82 16 49 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 50 H 0.43 -1.61 8.08 -92.71 -0.75 -2.36 16 51 H 0.07 -0.45 6.51 -2.39 -0.02 -0.46 16 52 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 53 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 54 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 Total: 0.00 -22.97 411.50 -2.17 -25.14 By element: Atomic # 1 Polarization: -16.75 SS G_CDS: -1.55 Total: -18.30 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 5.31 Total: 8.68 kcal Atomic # 7 Polarization: -2.46 SS G_CDS: -6.24 Total: -8.70 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -1.74 Total: -6.53 kcal Atomic # 14 Polarization: -2.35 SS G_CDS: 2.05 Total: -0.30 kcal Total: -22.97 -2.17 -25.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13813120_15608500.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.036 kcal (2) G-P(sol) polarization free energy of solvation -22.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds